-
1
-
-
84872503128
-
Y-chromosome evolution: Emerging insights into processes of Y-chromosome degeneration
-
Bachtrog, D. Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration. Nat. Rev. Genet. 14, 113-124 (2013).
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 113-124
-
-
Bachtrog, D.1
-
2
-
-
13844250828
-
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
-
Pollack, J. R. et al. Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc. Natl Acad. Sci. USA 99, 12963-12968 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 12963-12968
-
-
Pollack, J.R.1
-
3
-
-
49849103726
-
Aneuploidy cells losing their balance
-
Torres, E. M., Williams, B. R. & Amon, A. Aneuploidy cells losing their balance. Genetics 179, 737-746 (2008).
-
(2008)
Genetics
, vol.179
, pp. 737-746
-
-
Torres, E.M.1
Williams, B.R.2
Amon, A.3
-
5
-
-
0012486875
-
Model for the evolution of Y chromosomes and dosage compensation
-
Charlesworth, B. Model for the evolution of Y chromosomes and dosage compensation. Proc. Natl Acad. Sci. USA 75, 5618-5622 (1978).
-
(1978)
Proc. Natl Acad. Sci. USA
, vol.75
, pp. 5618-5622
-
-
Charlesworth, B.1
-
6
-
-
67649206510
-
Drosophila dosage compensation: A complex voyage to the X chromosome
-
Gelbart, M. E. & Kuroda, M. I. Drosophila dosage compensation: a complex voyage to the X chromosome. Development 136, 1399-1410 (2009).
-
(2009)
Development
, vol.136
, pp. 1399-1410
-
-
Gelbart, M.E.1
Kuroda, M.I.2
-
7
-
-
33845768982
-
Dosage compensation: The beginning and end of generalization
-
Straub, T. & Becker, P. B. Dosage compensation: the beginning and end of generalization. Nat. Rev. Genet. 8, 47-57 (2007).
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 47-57
-
-
Straub, T.1
Becker, P.B.2
-
8
-
-
0842344618
-
Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans
-
Reinke, V., Gil, I. S., Ward, S. & Kazmer, K. Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans. Development 131, 311-323 (2004).
-
(2004)
Development
, vol.131
, pp. 311-323
-
-
Reinke, V.1
Gil, I.S.2
Ward, S.3
Kazmer, K.4
-
9
-
-
33847284814
-
X chromosome repression by localization of the C elegans dosage compensation machinery to sites of transcription initiation
-
Ercan, S. et al. X chromosome repression by localization of the C elegans dosage compensation machinery to sites of transcription initiation. Nat. Genet. 39, 403-408 (2007).
-
(2007)
Nat. Genet.
, vol.39
, pp. 403-408
-
-
Ercan, S.1
-
10
-
-
84902985111
-
Complete dosage compensation and sex-biased gene expression in the moth Manduca sexta
-
Smith, G., Chen, Y.-R., Blissard, G. W. & Briscoe, A. D. Complete dosage compensation and sex-biased gene expression in the moth Manduca sexta. Genome Biol. Evol. 6, 526-537 (2014).
-
(2014)
Genome Biol. Evol.
, vol.6
, pp. 526-537
-
-
Smith, G.1
Chen, Y.-R.2
Blissard, G.W.3
Briscoe, A.D.4
-
11
-
-
84905366183
-
Sex determination: Why so many ways of doing it?
-
Bachtrog, D. et al. Sex determination: why so many ways of doing it? PLoS Biol. 12, e1001899 (2014).
-
(2014)
PLoS Biol.
, vol.12
-
-
Bachtrog, D.1
-
12
-
-
0034547524
-
The evolution of dosage-compensation mechanisms
-
Marín, I., Siegal, M. L. & Baker, B. S. The evolution of dosage-compensation mechanisms. Bioessays 22, 1106-1114 (2000).
-
(2000)
Bioessays
, vol.22
, pp. 1106-1114
-
-
Marín, I.1
Siegal, M.L.2
Baker, B.S.3
-
13
-
-
84883258670
-
The shared genome is a pervasive constraint on the evolution of sex-biased gene expression
-
Griffin, R. M., Dean, R., Grace, J. L., Rydén, P. & Friberg, U. The shared genome is a pervasive constraint on the evolution of sex-biased gene expression. Mol. Biol. Evol. 30, 2168-2176 (2013).
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 2168-2176
-
-
Griffin, R.M.1
Dean, R.2
Grace, J.L.3
Rydén, P.4
Friberg, U.5
-
14
-
-
84877748807
-
Interspecific divergence of transcription networks along lines of genetic variance in Drosophila: Dimensionality, evolvability, and constraint
-
Innocenti, P. & Chenoweth, S. F. Interspecific divergence of transcription networks along lines of genetic variance in Drosophila: dimensionality, evolvability, and constraint. Mol. Biol. Evol. 30, 1358-1367 (2013).
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1358-1367
-
-
Innocenti, P.1
Chenoweth, S.F.2
-
15
-
-
0021554565
-
Sex chromosomes and the evolution of sexual dimorphism
-
Rice, W. R. Sex chromosomes and the evolution of sexual dimorphism. Evolution 38, 735-742 (1984).
-
(1984)
Evolution
, vol.38
, pp. 735-742
-
-
Rice, W.R.1
-
16
-
-
84870539400
-
The effects of selection and genetic drift on the genomic distribution of sexually antagonistic alleles
-
Mullon, C., Pomiankowski, A. & Reuter, M. The effects of selection and genetic drift on the genomic distribution of sexually antagonistic alleles. Evolution 66, 3743-3753 (2012).
-
(2012)
Evolution
, vol.66
, pp. 3743-3753
-
-
Mullon, C.1
Pomiankowski, A.2
Reuter, M.3
-
17
-
-
65349150546
-
The W, X, Y and Z of sex chromosome dosage compensation
-
Mank, J. E. The W, X, Y and Z of sex chromosome dosage compensation. Trends Genet. 25, 226-233 (2009).
-
(2009)
Trends Genet.
, vol.25
, pp. 226-233
-
-
Mank, J.E.1
-
20
-
-
0023501735
-
The relative rates of evolution of sex chromosomes and autosomes
-
Charlesworth, B., Coyne, J. A. & Barton, N. H. The relative rates of evolution of sex chromosomes and autosomes. Am. Nat. 130, 113-146 (1987).
-
(1987)
Am. Nat.
, vol.130
, pp. 113-146
-
-
Charlesworth, B.1
Coyne, J.A.2
Barton, N.H.3
-
21
-
-
77249165844
-
Effective population size and the Faster-X Effect: Empirical results and their interpretation
-
Mank, J. E., Vicoso, B., Berlin, S. & Charlesworth, B. Effective population size and the Faster-X Effect: Empirical results and their interpretation. Evolution 64, 663-674 (2010).
-
(2010)
Evolution
, vol.64
, pp. 663-674
-
-
Mank, J.E.1
Vicoso, B.2
Berlin, S.3
Charlesworth, B.4
-
22
-
-
77953798665
-
Ontogenetic complexity of sexual dimorphism and sex-specific selection
-
Mank, J. E., Nam, K., Brunström, B. & Ellegren, H. Ontogenetic complexity of sexual dimorphism and sex-specific selection. Mol. Biol. Evol. 27, 1570-1578 (2010).
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1570-1578
-
-
Mank, J.E.1
Nam, K.2
Brunström, B.3
Ellegren, H.4
-
23
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
Brawand, D. et al. The evolution of gene expression levels in mammalian organs. Nature 478, 343-348 (2011).
-
(2011)
Nature
, vol.478
, pp. 343-348
-
-
Brawand, D.1
-
24
-
-
0027329717
-
The influence of mating system and overlapping generations on effective population size
-
Nunney, L. The influence of mating system and overlapping generations on effective population size. Evolution 47, 1329-1341 (1993).
-
(1993)
Evolution
, vol.47
, pp. 1329-1341
-
-
Nunney, L.1
-
25
-
-
0021538334
-
On the measurement of natural and sexual selection: Applications
-
Arnold, S. J. & Wade, M. J. On the measurement of natural and sexual selection: applications. Evolution 38, 720-734 (1984).
-
(1984)
Evolution
, vol.38
, pp. 720-734
-
-
Arnold, S.J.1
Wade, M.J.2
-
26
-
-
0035822072
-
Sexual selection and the maintenance of sexual reproduction
-
Agrawal, A. F. Sexual selection and the maintenance of sexual reproduction. Nature 411, 692-695 (2001).
-
(2001)
Nature
, vol.411
, pp. 692-695
-
-
Agrawal, A.F.1
-
27
-
-
0030433286
-
The Lek Paradox and the capture of genetic variance by condition dependent traits
-
Rowe, L. & Houle, D. The Lek Paradox and the capture of genetic variance by condition dependent traits. Proc. R Soc. Lond. Ser. B 263, 1415-1421 (1996).
-
(1996)
Proc. R Soc. Lond. Ser. B
, vol.263
, pp. 1415-1421
-
-
Rowe, L.1
Houle, D.2
-
28
-
-
1842855365
-
Do sexual ornaments demonstrate heightened condition-dependent expression as predicted by the handicap hypothesis?
-
Cotton, S., Fowler, K. & Pomiankowski, A. Do sexual ornaments demonstrate heightened condition-dependent expression as predicted by the handicap hypothesis? Proc. R Soc. Lond. Ser. B 271, 771-783 (2004).
-
(2004)
Proc. R Soc. Lond. Ser. B
, vol.271
, pp. 771-783
-
-
Cotton, S.1
Fowler, K.2
Pomiankowski, A.3
-
29
-
-
0036808527
-
Effective size of populations with unequal sex ratio and variation in mating success
-
Nomura, T. Effective size of populations with unequal sex ratio and variation in mating success. J. Anim. Breed. Genet. 119, 297-310 (2002).
-
(2002)
J. Anim. Breed. Genet.
, vol.119
, pp. 297-310
-
-
Nomura, T.1
-
30
-
-
52949138240
-
A bird's-eye view of sex chromosome dosage compensation
-
Arnold, A. P., Itoh, Y. & Melamed, E. A bird's-eye view of sex chromosome dosage compensation. Ann. Rev. Genomics Hum. Genet. 9, 109-127 (2008).
-
(2008)
Ann. Rev. Genomics Hum. Genet.
, vol.9
, pp. 109-127
-
-
Arnold, A.P.1
Itoh, Y.2
Melamed, E.3
-
31
-
-
84863885448
-
Comparative studies of gene expression and the evolution of gene regulation
-
Romero, I. G., Ruvinsky, I. & Gilad, Y. Comparative studies of gene expression and the evolution of gene regulation. Nat. Rev. Genet. 13, 505-516 (2012).
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 505-516
-
-
Romero, I.G.1
Ruvinsky, I.2
Gilad, Y.3
-
32
-
-
84861434684
-
W chromosome expression responds to female-specific selection
-
Moghadam, H. K., Pointer, M. A., Wright, A. E., Berlin, S. & Mank, J. E. W chromosome expression responds to female-specific selection. Proc. Natl Acad. Sci. USA 109, 8207-8211 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 8207-8211
-
-
Moghadam, H.K.1
Pointer, M.A.2
Wright, A.E.3
Berlin, S.4
Mank, J.E.5
-
33
-
-
3042591076
-
Common pattern of evolution of gene expression level and protein sequence in Drosophila
-
Nuzhdin, S. V., Wayne, M. L., Harmon, K. L. & McIntyre, L. M. Common pattern of evolution of gene expression level and protein sequence in Drosophila. Mol. Biol. Evol. 21, 1308-1317 (2004).
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1308-1317
-
-
Nuzhdin, S.V.1
Wayne, M.L.2
Harmon, K.L.3
McIntyre, L.M.4
-
34
-
-
79952822299
-
Evolution of gene expression in fire ants: The effects of developmental stage, caste, and species
-
Ometto, L., Shoemaker, D., Ross, K. G. & Keller, L. Evolution of gene expression in fire ants: the effects of developmental stage, caste, and species. Mol. Biol. Evol. 28, 1381-1392 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 1381-1392
-
-
Ometto, L.1
Shoemaker, D.2
Ross, K.G.3
Keller, L.4
-
35
-
-
84928018599
-
Sexual selection drives evolution and rapid turnover of male gene expression
-
Harrison, P. W. et al. Sexual selection drives evolution and rapid turnover of male gene expression. Proc. Natl Acad. Sci. USA 112, 4393-4398 (2015).
-
(2015)
Proc. Natl Acad. Sci. USA
, vol.112
, pp. 4393-4398
-
-
Harrison, P.W.1
-
36
-
-
77953212314
-
The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution
-
Gout, J.-F., Kahn, D., Duret, L. & Paramecium Post-Genomics Consortium. The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution. PLoS Genet. 6, e1000944 (2010).
-
(2010)
PLoS Genet.
, vol.6
-
-
Gout, J.-F.1
Kahn, D.2
Duret, L.3
-
37
-
-
13444251367
-
Evolutionary significance of gene expression divergence
-
Jordan, I. K., Mariño-Ramírez, L. & Koonin, E. V. Evolutionary significance of gene expression divergence. Gene 345, 119-126 (2005).
-
(2005)
Gene
, vol.345
, pp. 119-126
-
-
Jordan, I.K.1
Mariño-Ramírez, L.2
Koonin, E.V.3
-
38
-
-
22144447840
-
Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees
-
Khaitovich, P. et al. Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science 309, 1850-1854 (2005).
-
(2005)
Science
, vol.309
, pp. 1850-1854
-
-
Khaitovich, P.1
-
39
-
-
57149084867
-
Gene regulation in primates evolves under tissue-specific selection pressures
-
Blekhman, R., Oshlack, A., Chabot, A. E., Smyth, G. K. & Gilad, Y. Gene regulation in primates evolves under tissue-specific selection pressures. PLoS Genet. 4, e1000271 (2008).
-
(2008)
PLoS Genet.
, vol.4
-
-
Blekhman, R.1
Oshlack, A.2
Chabot, A.E.3
Smyth, G.K.4
Gilad, Y.5
-
40
-
-
17744376961
-
Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions
-
Lemos, B., Bettencourt, B. R., Meiklejohn, C. D. & Hartl, D. L. Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions. Mol. Biol. Evol. 22, 1345-1354 (2005).
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1345-1354
-
-
Lemos, B.1
Bettencourt, B.R.2
Meiklejohn, C.D.3
Hartl, D.L.4
-
41
-
-
84876552216
-
Evolution at two levels in fire ants: The relationship between patterns of gene expression and protein sequence evolution
-
Hunt, B. G., Ometto, L., Keller, L. & Goodisman, M. A. D. Evolution at two levels in fire ants: the relationship between patterns of gene expression and protein sequence evolution. Mol. Biol. Evol. 30, 263-271 (2012).
-
(2012)
Mol. Biol. Evol.
, vol.30
, pp. 263-271
-
-
Hunt, B.G.1
Ometto, L.2
Keller, L.3
Goodisman, M.A.D.4
-
42
-
-
26444621352
-
Why highly expressed proteins evolve slowly
-
Drummond, D. A., Bloom, J. D., Adami, C., Wilke, C. O. & Arnold, F. H. Why highly expressed proteins evolve slowly. Proc. Natl Acad. Sci. USA 102, 14338-14343 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 14338-14343
-
-
Drummond, D.A.1
Bloom, J.D.2
Adami, C.3
Wilke, C.O.4
Arnold, F.H.5
-
43
-
-
84870712349
-
Trade-off between selection for dosage compensation and masculinization on the avian Z chromosome
-
Wright, A. E., Moghadam, H. K. & Mank, J. E. Trade-off between selection for dosage compensation and masculinization on the avian Z chromosome. Genetics 192, 1433-1445 (2012).
-
(2012)
Genetics
, vol.192
, pp. 1433-1445
-
-
Wright, A.E.1
Moghadam, H.K.2
Mank, J.E.3
-
45
-
-
84875804734
-
Male-biased fitness effects of spontaneous mutations in Drosophila melanogaster
-
Sharp, N. P. & Agrawal, A. F. Male-biased fitness effects of spontaneous mutations in Drosophila melanogaster. Evolution 67, 1189-1195 (2013).
-
(2013)
Evolution
, vol.67
, pp. 1189-1195
-
-
Sharp, N.P.1
Agrawal, A.F.2
-
46
-
-
79958295857
-
Association between sex-biased gene expression and mutations with sex-specific phenotypic consequences in Drosophila
-
Connallon, T. & Clark, A. G. Association between sex-biased gene expression and mutations with sex-specific phenotypic consequences in Drosophila. Genome Biol. Evol. 3, 151-155 (2011).
-
(2011)
Genome Biol. Evol.
, vol.3
, pp. 151-155
-
-
Connallon, T.1
Clark, A.G.2
-
47
-
-
77958483993
-
Hyperexpression of the X chromosome in both sexes results in extensive female bias of X-linked genes in the Flour Beetle
-
Prince, E. G., Kirkland, D. & Demuth, J. P. Hyperexpression of the X chromosome in both sexes results in extensive female bias of X-linked genes in the Flour Beetle. Genome Biol. Evol. 2, 336-346 (2010).
-
(2010)
Genome Biol. Evol.
, vol.2
, pp. 336-346
-
-
Prince, E.G.1
Kirkland, D.2
Demuth, J.P.3
-
48
-
-
84859448442
-
Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome
-
Pessia, E., Makino, T., Bailly-Bechet, M., McLysaght, A. & Marais, G. A. B. Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome. Proc. Natl Acad. Sci. USA 109, 5346-5351 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 5346-5351
-
-
Pessia, E.1
Makino, T.2
Bailly-Bechet, M.3
McLysaght, A.4
Marais, G.A.B.5
-
49
-
-
0029807745
-
Sex-specific assembly of a dosage compensation complex on the nematode X chromosome
-
Chuang, P.-T., Lieb, J. D. & Meyer, B. J. Sex-specific assembly of a dosage compensation complex on the nematode X chromosome. Science 274, 1736-1739 (1996).
-
(1996)
Science
, vol.274
, pp. 1736-1739
-
-
Chuang, P.-T.1
Lieb, J.D.2
Meyer, B.J.3
-
50
-
-
77957360463
-
Requirement of male-specific dosage compensation in Drosophila females - Implications of early X chromosome gene expression
-
Gladstein, N., McKeon, M. N. & Horabin, J. I. Requirement of male-specific dosage compensation in Drosophila females - implications of early X chromosome gene expression. PLoS Genet. 6, e1001041 (2010).
-
(2010)
PLoS Genet.
, vol.6
-
-
Gladstein, N.1
McKeon, M.N.2
Horabin, J.I.3
-
51
-
-
69249173100
-
Effective population size and the faster-X effect: An extended model
-
Vicoso, B. & Charlesworth, B. Effective population size and the faster-X effect: an extended model. Evolution 63, 2413-2426 (2009).
-
(2009)
Evolution
, vol.63
, pp. 2413-2426
-
-
Vicoso, B.1
Charlesworth, B.2
-
52
-
-
47349090987
-
Evolution of discrete populations and the canonical diffusion of adaptive dynamics
-
Champagnat, N. & Lambert, A. Evolution of discrete populations and the canonical diffusion of adaptive dynamics. Ann. Appl. Prob. 17, 102-155 (2007).
-
(2007)
Ann. Appl. Prob.
, vol.17
, pp. 102-155
-
-
Champagnat, N.1
Lambert, A.2
-
53
-
-
84858337936
-
The stationary distribution of a continuously varying strategy in a class-structured population under mutation-selection-drift balance
-
Lehmann, L. The stationary distribution of a continuously varying strategy in a class-structured population under mutation-selection-drift balance. J. Evol. Biol. 25, 770-787 (2012).
-
(2012)
J. Evol. Biol.
, vol.25
, pp. 770-787
-
-
Lehmann, L.1
-
54
-
-
33746442051
-
Segregating variation in the transcriptome: Cis regulation and additivity of effects
-
Hughes, K. A. et al. Segregating variation in the transcriptome: cis regulation and additivity of effects. Genetics 173, 1347-1355 (2006).
-
(2006)
Genetics
, vol.173
, pp. 1347-1355
-
-
Hughes, K.A.1
-
55
-
-
0033588309
-
Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin
-
Kelley, R. L. et al. Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin. Cell 98, 513-522 (1999).
-
(1999)
Cell
, vol.98
, pp. 513-522
-
-
Kelley, R.L.1
-
56
-
-
58149347832
-
Positive selection at the binding sites of the male-specific lethal complex involved in dosage compensation in Drosophila
-
Bachtrog, D. Positive selection at the binding sites of the male-specific lethal complex involved in dosage compensation in Drosophila. Genetics 180, 1123-1129 (2008).
-
(2008)
Genetics
, vol.180
, pp. 1123-1129
-
-
Bachtrog, D.1
-
59
-
-
84938376928
-
-
Andrew, S. Babraham Bioinformatics http://www.bioinformatics.babraham.ac.uk/projects/fastqc/.
-
-
-
Andrew, S.1
-
60
-
-
84864483625
-
RobiNA: A user-friendly, integrated software solution for RNA-Seq-based transcriptomics
-
Lohse, M. et al. RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res. 40, W622-W627 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. W622-W627
-
-
Lohse, M.1
-
61
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
62
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, 1-13 (2013).
-
(2013)
Genome Biol.
, vol.14
, pp. 1-13
-
-
Kim, D.1
-
63
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, 1-10 (2009).
-
(2009)
Genome Biol.
, vol.10
, pp. 1-10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
64
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
65
-
-
75249087100
-
edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M. D., McCarthy, D. J. & Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
66
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
67
-
-
23044471766
-
An algorithm for progressive multiple alignment of sequences with insertions
-
Löytynoja, A. & Goldman, N. An algorithm for progressive multiple alignment of sequences with insertions. Proc. Natl Acad. Sci. USA 102, 10557-10562 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 10557-10562
-
-
Löytynoja, A.1
Goldman, N.2
-
68
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
69
-
-
44849107389
-
Natural selection in avian protein-coding genes expressed in brain
-
Axelsson, E. et al. Natural selection in avian protein-coding genes expressed in brain. Mol. Ecol. 17, 3008-3017 (2008).
-
(2008)
Mol. Ecol.
, vol.17
, pp. 3008-3017
-
-
Axelsson, E.1
|