-
1
-
-
0030801002
-
Gapped BLASTand PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, et al. 1997. Gapped BLASTand PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
68949215578
-
The silkworm Z chromosome is enriched in testis-specific genes
-
Arunkumar KP, Mita K, Nagaraju J. 2009. The silkworm Z chromosome is enriched in testis-specific genes. Genetics. 182:493-501.
-
(2009)
Genetics
, vol.182
, pp. 493-501
-
-
Arunkumar, K.P.1
Mita, K.2
Nagaraju, J.3
-
3
-
-
61349113311
-
Systems genetics of complex traits in Drosophila melanogaster
-
Ayroles JF, et al. 2009. Systems genetics of complex traits in Drosophila melanogaster. Nat Genet. 41:299-307.
-
(2009)
Nat. Genet.
, vol.41
, pp. 299-307
-
-
Ayroles, J.F.1
-
4
-
-
47649117051
-
Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila
-
Baines JF, Sawyer SA, Hartl DL, Parsch J. 2008. Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila. Mol Biol Evol. 25:1639-1650.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1639-1650
-
-
Baines, J.F.1
Sawyer, S.A.2
Hartl, D.L.3
Parsch, J.4
-
5
-
-
0036906987
-
Retroposed new genes out of the X in Drosophila
-
Betran E, Thornton K, Long M. 2002. Retroposed new genes out of the X in Drosophila. Genome Res. 12:1854-1859.
-
(2002)
Genome Res.
, vol.12
, pp. 1854-1859
-
-
Betran, E.1
Thornton, K.2
Long, M.3
-
6
-
-
0012486875
-
Model for evolution of Y-chromosomes and dosage compensation
-
Charlesworth B. 1978. Model for evolution of Y-chromosomes and dosage compensation. Proc Natl Acad Sci U S A. 75:5618-5622.
-
(1978)
Proc. Natl. Acad. Sci. U. S. A.
, vol.75
, pp. 5618-5622
-
-
Charlesworth, B.1
-
7
-
-
24644503098
-
Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa A, et al. 2005. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 21:3674-3676.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
-
8
-
-
48249115194
-
The status of dosage compensation in the multiple X chromosomes of the Platypus
-
Deakin JE, Hore TA, Koina E, Graves J A M. 2008. The status of dosage compensation in the multiple X chromosomes of the Platypus. PLoS Genet. 4: e1000140.
-
(2008)
PLoS Genet.
, vol.4
-
-
Deakin, J.E.1
Hore, T.A.2
Koina, E.3
Graves, J.A.M.4
-
9
-
-
39449092239
-
Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex
-
Eads BD, Colbourne JK, Bohuski E, Andrews J. 2007. Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex. BMC Genomics. 8:464.
-
(2007)
BMC Genomics
, vol.8
, pp. 464
-
-
Eads, B.D.1
Colbourne, J.K.2
Bohuski, E.3
Andrews, J.4
-
10
-
-
36849094065
-
Faced with inequality: Chicken do not have a general dosage compensation of sex-linked genes
-
Ellegren H, et al. 2007. Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes. BMC Biol. 5:40.
-
(2007)
BMC Biol.
, vol.5
, pp. 40
-
-
Ellegren, H.1
-
11
-
-
34548013932
-
The evolution of sex-biased genes and sexbiased gene expression
-
Ellegren H, Parsch J. 2007. The evolution of sex-biased genes and sexbiased gene expression. Nat Rev Genet. 8:689-698.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 689-698
-
-
Ellegren, H.1
Parsch, J.2
-
12
-
-
1642475221
-
Extensive gene traffic on the mammalian X chromosome
-
Emerson JJ, Kaessmann H, Betran E, Long M. 2004. Extensive gene traffic on the mammalian X chromosome. Science. 303:537-540.
-
(2004)
Science
, vol.303
, pp. 537-540
-
-
Emerson, J.J.1
Kaessmann, H.2
Betran, E.3
Long, M.4
-
13
-
-
33749859791
-
Sebida: A database for the functional and evolutionary analysis of genes with sex-biased expression
-
Gnad F, Parsch J. 2006. Sebida: a database for the functional and evolutionary analysis of genes with sex-biased expression. Bioinformatics. 22:2577-2579.
-
(2006)
Bioinformatics
, vol.22
, pp. 2577-2579
-
-
Gnad, F.1
Parsch, J.2
-
14
-
-
33847020017
-
Global analysis of X-chromosome dosage compensation
-
Gupta V, et al. 2006. Global analysis of X-chromosome dosage compensation. J Biol. 5:3.
-
(2006)
J. Biol.
, vol.5
, pp. 3
-
-
Gupta, V.1
-
15
-
-
15744366399
-
Female-biased gene expression in the malaria mosquito Anopheles gambiae
-
Hahn MW, Lanzaro GC. 2005. Female-biased gene expression in the malaria mosquito Anopheles gambiae. Curr Biol. 15: R192-193.
-
(2005)
Curr. Biol.
, vol.15
-
-
Hahn, M.W.1
Lanzaro, G.C.2
-
16
-
-
35648982966
-
X chromosome inactivation during Drosophila spermatogenesis
-
Hense W, Baines JF, Parsch J. 2007. X chromosome inactivation during Drosophila spermatogenesis. PLoS Biol. 5: e273.
-
(2007)
PLoS Biol.
, vol.5
-
-
Hense, W.1
Baines, J.F.2
Parsch, J.3
-
17
-
-
37549050969
-
A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation
-
Hunt T, et al. 2007. A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science. 318:1913-1916.
-
(2007)
Science
, vol.318
, pp. 1913-1916
-
-
Hunt, T.1
-
18
-
-
33947528380
-
Dosage compensation is less effective in birds than in mammals
-
Itoh Y, et al. 2007. Dosage compensation is less effective in birds than in mammals. J Biol. 6:2.
-
(2007)
J. Biol.
, vol.6
, pp. 2
-
-
Itoh, Y.1
-
19
-
-
72449139061
-
Evolution of sex-dependent gene expression in three recently diverged species of Drosophila
-
Jiang Z, Machado CA. 2009. Evolution of sex-dependent gene expression in three recently diverged species of Drosophila. Genetics. 183:1175-1185.
-
(2009)
Genetics
, vol.183
, pp. 1175-1185
-
-
Jiang, Z.1
Machado, C.A.2
-
20
-
-
33751333680
-
Nonrandom distribution of genes with sexbiased expression in the chicken genome
-
Kaiser VB, Ellegren H. 2006. Nonrandom distribution of genes with sexbiased expression in the chicken genome. Evolution. 60:1945-1951.
-
(2006)
Evolution
, vol.60
, pp. 1945-1951
-
-
Kaiser, V.B.1
Ellegren, H.2
-
21
-
-
2642558614
-
The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation
-
Khil PP, Smirnova NA, Romanienko PJ, Camerini-Otero RD. 2004. The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation. Nat Genet. 36:642-646.
-
(2004)
Nat. Genet.
, vol.36
, pp. 642-646
-
-
Khil, P.P.1
Smirnova, N.A.2
Romanienko, P.J.3
Camerini-Otero, R.D.4
-
22
-
-
33846095284
-
VectorBase: A home for invertebrate vectors of human pathogens
-
Lawson D, et al. 2007. VectorBase: a home for invertebrate vectors of human pathogens. Nucleic Acids Res. 35: D503-D505.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Lawson, D.1
-
23
-
-
77953768324
-
Female-biased expression on the X chromosome as a key step in sex chromosome evolution in threespine sticklebacks
-
doi: 10.1093/molbev/msq031
-
Leder E, et al. 2010. Female-biased expression on the X chromosome as a key step in sex chromosome evolution in threespine sticklebacks. Mol Biol Evol. doi: 10.1093/molbev/msq031.
-
(2010)
Mol. Biol. Evol.
-
-
Leder, E.1
-
25
-
-
0038420050
-
Evidence that the human X chromosome is enriched for male-specific but not female-specific genes
-
Lercher MJ, Urrutia AO, Hurst LD. 2003. Evidence that the human X chromosome is enriched for male-specific but not female-specific genes. Mol Biol Evol. 20:1113-1116.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1113-1116
-
-
Lercher, M.J.1
Urrutia, A.O.2
Hurst, L.D.3
-
26
-
-
38749117957
-
Dosage compensation in the mouse balances upregulation and silencing of X-linked genes
-
Lin H, et al. 2007. Dosage compensation in the mouse balances upregulation and silencing of X-linked genes. PLoS Biol. 5: e326.
-
(2007)
PLoS Biol.
, vol.5
-
-
Lin, H.1
-
27
-
-
65349150546
-
The W, X, Y and Z of sex-chromosome dosage compensation
-
Mank JE. 2009. The W, X, Y and Z of sex-chromosome dosage compensation. Trends Genet. 25:226-233.
-
(2009)
Trends Genet.
, vol.25
, pp. 226-233
-
-
Mank, J.E.1
-
28
-
-
60549110047
-
All dosage compensation is local: Gene-bygene regulation of sex-biased expression on the chicken Z chromosome
-
Mank JE, Ellegren H. 2009. All dosage compensation is local: gene-bygene regulation of sex-biased expression on the chicken Z chromosome. Heredity. 102:312-320.
-
(2009)
Heredity
, vol.102
, pp. 312-320
-
-
Mank, J.E.1
Ellegren, H.2
-
29
-
-
33645107504
-
Genome-wide analysis of gene expression in adult Anopheles gambiae
-
Marinotti O, et al. 2006. Genome-wide analysis of gene expression in adult Anopheles gambiae. Insect Mol Biol. 15:1-12.
-
(2006)
Insect Mol. Biol.
, vol.15
, pp. 1-12
-
-
Marinotti, O.1
-
30
-
-
24044499681
-
Microarray analysis of genes showing variable expression following a blood meal in Anopheles gambiae
-
Marinotti O, Nguyen QK, Calvo E, James AA, Ribeiro JM. 2005. Microarray analysis of genes showing variable expression following a blood meal in Anopheles gambiae. Insect Mol Biol. 14:365-373.
-
(2005)
Insect Mol. Biol.
, vol.14
, pp. 365-373
-
-
Marinotti, O.1
Nguyen, Q.K.2
Calvo, E.3
James, A.A.4
Ribeiro, J.M.5
-
31
-
-
73649093539
-
A complex suite of forces drives gene traffic from Drosophila X chromosomes
-
Meisel RP, Han MV, Hahn MW. 2010. A complex suite of forces drives gene traffic from Drosophila X chromosomes. Genome Biol Evol. 2009:176-188.
-
(2010)
Genome Biol. Evol.
, vol.2009
, pp. 176-188
-
-
Meisel, R.P.1
Han, M.V.2
Hahn, M.W.3
-
33
-
-
38549130266
-
Sex, dose, and equality
-
Oliver B. 2007. Sex, dose, and equality. PLoS Biol. 5: e340.
-
(2007)
PLoS Biol.
, vol.5
-
-
Oliver, B.1
-
34
-
-
0346460960
-
Paucity of genes on the Drosophila X chromosome showing male-biased expression
-
Parisi M, et al. 2003. Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science. 299:697-700.
-
(2003)
Science
, vol.299
, pp. 697-700
-
-
Parisi, M.1
-
36
-
-
43249118306
-
Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes
-
Potrzebowski L, et al. 2008. Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes. PLoS Biol. 6: e80.
-
(2008)
PLoS Biol.
, vol.6
-
-
Potrzebowski, L.1
-
37
-
-
0037504137
-
Sexdependent gene expression and evolution of the Drosophila transcriptome
-
Ranz JM, Castillo-Davis CI, Meiklejohn CD, Hartl DL. 2003. Sexdependent gene expression and evolution of the Drosophila transcriptome. Science. 300:1742-1745.
-
(2003)
Science
, vol.300
, pp. 1742-1745
-
-
Ranz, J.M.1
Castillo-Davis, C.I.2
Meiklejohn, C.D.3
Hartl, D.L.4
-
38
-
-
0842344618
-
Genome-wide germlineenriched and sex-biased expression profiles in Caenorhabditis elegans
-
Reinke V, Gil IS, Ward S, Kazmer K. 2004. Genome-wide germlineenriched and sex-biased expression profiles in Caenorhabditis elegans. Development. 131:311-323.
-
(2004)
Development
, vol.131
, pp. 311-323
-
-
Reinke, V.1
Gil, I.S.2
Ward, S.3
Kazmer, K.4
-
39
-
-
0033639116
-
A global profile of germline gene expression in C. elegans
-
Reinke V, et al. 2000. A global profile of germline gene expression in C. elegans. Mol Cell. 6:605-616.
-
(2000)
Mol. Cell.
, vol.6
, pp. 605-616
-
-
Reinke, V.1
-
40
-
-
0021554565
-
Sex chromosomes and the evolution of sexual dimorphism
-
Rice WR. 1984. Sex chromosomes and the evolution of sexual dimorphism. Evolution. 38:735-742.
-
(1984)
Evolution
, vol.38
, pp. 735-742
-
-
Rice, W.R.1
-
41
-
-
0000884929
-
The accumulation of sexually antagonistic genes as a selective agent promoting the evolution of reduced recombination between primitive sex chromosomes
-
Rice WR. 1987. The accumulation of sexually antagonistic genes as a selective agent promoting the evolution of reduced recombination between primitive sex chromosomes. Evolution. 41:911-914.
-
(1987)
Evolution
, vol.41
, pp. 911-914
-
-
Rice, W.R.1
-
42
-
-
41949090434
-
The genome of the model beetle and pest Tribolium castaneum
-
Richards S, et al. 2008. The genome of the model beetle and pest Tribolium castaneum. Nature. 452:949-955.
-
(2008)
Nature
, vol.452
, pp. 949-955
-
-
Richards, S.1
-
43
-
-
17644408362
-
Sexual dimorphism in mammalian gene expression
-
Rinn JL, Snyder M. 2005. Sexual dimorphism in mammalian gene expression. Trends Genet. 21:298-305.
-
(2005)
Trends Genet.
, vol.21
, pp. 298-305
-
-
Rinn, J.L.1
Snyder, M.2
-
44
-
-
27144546434
-
A human protein complex homologous to the Drosophila MSL complex is responsible for the majority of histone H4 acetylation at lysine 16
-
Smith ER, et al. 2005. A human protein complex homologous to the Drosophila MSL complex is responsible for the majority of histone H4 acetylation at lysine 16. Mol Cell Biol. 25:9175-9188.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 9175-9188
-
-
Smith, E.R.1
-
46
-
-
33751514327
-
Nonrandom representation of sex-biased genes on chicken Z chromosome
-
Storchova R, Divina P. 2006. Nonrandom representation of sex-biased genes on chicken Z chromosome. J Mol Evol. 63:676-681.
-
(2006)
J. Mol. Evol.
, vol.63
, pp. 676-681
-
-
Storchova, R.1
Divina, P.2
-
47
-
-
34147123145
-
The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments
-
Storey JD, Dai JY, Leek JT. 2007. The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments. Biostatistics. 8:414-432.
-
(2007)
Biostatistics
, vol.8
, pp. 414-432
-
-
Storey, J.D.1
Dai, J.Y.2
Leek, J.T.3
-
49
-
-
33845768982
-
Dosage compensation: The beginning and end of generalization
-
Straub T, Becker PB. 2007. Dosage compensation: the beginning and end of generalization. Nat Rev Genet. 8:47-57.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 47-57
-
-
Straub, T.1
Becker, P.B.2
-
50
-
-
36049039511
-
Demasculinization of X chromosomes in the Drosophila genus
-
Sturgill D, Zhang Y, Parisi M, Oliver B. 2007. Demasculinization of X chromosomes in the Drosophila genus. Nature. 450:238-241.
-
(2007)
Nature
, vol.450
, pp. 238-241
-
-
Sturgill, D.1
Zhang, Y.2
Parisi, M.3
Oliver, B.4
-
51
-
-
58149199579
-
FlyBase: Enhancing Drosophila Gene Ontology annotations
-
Tweedie S, et al. 2009. FlyBase: enhancing Drosophila Gene Ontology annotations. Nucleic Acids Res. 37: D555-D559.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Tweedie, S.1
-
52
-
-
73649118486
-
Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes
-
Vibranovski MD, Lopes HF, Karr TL, Long M. 2009. Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. PLoS Genet. 5: e1000731.
-
(2009)
PLoS Genet.
, vol.5
-
-
Vibranovski, M.D.1
Lopes, H.F.2
Karr, T.L.3
Long, M.4
-
53
-
-
66049085185
-
General gene movement off the X chromosome in the Drosophila genus
-
Vibranovski MD, Zhang Y, Long M. 2009. General gene movement off the X chromosome in the Drosophila genus. Genome Res. 19:897-903.
-
(2009)
Genome Res.
, vol.19
, pp. 897-903
-
-
Vibranovski, M.D.1
Zhang, Y.2
Long, M.3
-
54
-
-
67349224046
-
The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?
-
Vicoso B, Charlesworth B. 2009. The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: a consequence of dosage compensation? J Mol Evol. 68:576-583.
-
(2009)
J. Mol. Evol.
, vol.68
, pp. 576-583
-
-
Vicoso, B.1
Charlesworth, B.2
-
55
-
-
33846066203
-
BeetleBase: The model organism database for Tribolium castaneum
-
Wang L, Wang S, Li Y, Paradesi MS, Brown SJ. 2007. BeetleBase: the model organism database for Tribolium castaneum. Nucleic Acids Res. 35: D476-D479.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Wang, L.1
Wang, S.2
Li, Y.3
Paradesi, M.S.4
Brown, S.J.5
-
56
-
-
0035071815
-
An abundance of X-linked genes expressed in spermatogonia
-
Wang PJ, McCarrey JR, Yang F, Page DC. 2001. An abundance of X-linked genes expressed in spermatogonia. Nat Genet. 27:422-426.
-
(2001)
Nat. Genet.
, vol.27
, pp. 422-426
-
-
Wang, P.J.1
McCarrey, J.R.2
Yang, F.3
Page, D.C.4
-
57
-
-
77953941290
-
Condition-dependence of the sexually dimorphic transcriptome in Drosophila melanogaster
-
doi:10.1111/j.1558-5646.2009.00938.x
-
Wyman MJ, Agrawal AF, Rowe L. 2010. Condition-dependence of the sexually dimorphic transcriptome in Drosophila melanogaster. Evolution. doi:10.1111/j.1558-5646.2009.00938.x.
-
(2010)
Evolution
-
-
Wyman, M.J.1
Agrawal, A.F.2
Rowe, L.3
-
58
-
-
33746681910
-
Tissue-specific expression and regulation of sexually dimorphic genes in mice
-
Yang X, et al. 2006. Tissue-specific expression and regulation of sexually dimorphic genes in mice. Genome Res. 16:995-1004.
-
(2006)
Genome Res.
, vol.16
, pp. 995-1004
-
-
Yang, X.1
-
59
-
-
65349144957
-
Dosage analysis of Z chromosome genes using microarray in silkworm, Bombyx mori
-
Zha XF, et al. 2009. Dosage analysis of Z chromosome genes using microarray in silkworm, Bombyx mori. Insect Biochem Mol Biol. 39:315-321.
-
(2009)
Insect Biochem. Mol. Biol.
, vol.39
, pp. 315-321
-
-
Zha, X.F.1
-
60
-
-
76749127101
-
An evolutionary consequence of dosage compensation on Drosophila melanogaster female X-chromatin structure?
-
Zhang Y, Oliver B. 2010. An evolutionary consequence of dosage compensation on Drosophila melanogaster female X-chromatin structure? BMC Genomics. 11:6.
-
(2010)
BMC Genomics
, vol.11
, pp. 6
-
-
Zhang, Y.1
Oliver, B.2
-
61
-
-
36049041622
-
Constraint and turnover in sex-biased gene expression in the genus Drosophila
-
Zhang Y, Sturgill D, Parisi M, Kumar S, Oliver B. 2007. Constraint and turnover in sex-biased gene expression in the genus Drosophila. Nature. 450:233-237.
-
(2007)
Nature
, vol.450
, pp. 233-237
-
-
Zhang, Y.1
Sturgill, D.2
Parisi, M.3
Kumar, S.4
Oliver, B.5
-
62
-
-
6344272229
-
Molecular evolution of sexbiased genes in Drosophila
-
Zhang Z, Hambuch TM, Parsch J. 2004. Molecular evolution of sexbiased genes in Drosophila. Mol Biol Evol. 21:2130-2139.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 2130-2139
-
-
Zhang, Z.1
Hambuch, T.M.2
Parsch, J.3
|