메뉴 건너뛰기




Volumn 211, Issue , 2015, Pages 56-65

Systematic analysis of CRISPR-Cas9 mismatch tolerance reveals low levels of off-target activity

Author keywords

CRISPR Cas9; CrRNA; Functional assay; Gene editing; Genome engineering; Specificity

Indexed keywords

DNA SEQUENCES; NUCLEIC ACIDS; PROTEINS; RNA; THROUGHPUT;

EID: 84938098019     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2015.06.427     Document Type: Article
Times cited : (124)

References (35)
  • 1
    • 84874624936 scopus 로고    scopus 로고
    • Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease
    • Cho S.W., Kim S., Kim J.M., Kim J.S. Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat. Biotechnol. 2013, 31:230-232.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 230-232
    • Cho, S.W.1    Kim, S.2    Kim, J.M.3    Kim, J.S.4
  • 2
    • 84891710947 scopus 로고    scopus 로고
    • Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases
    • Cho S.W., Kim S., Kim Y., Kweon J., Kim H.S., Bae S., Kim J.S. Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases. Genome Res. 2014, 24:132-141.
    • (2014) Genome Res. , vol.24 , pp. 132-141
    • Cho, S.W.1    Kim, S.2    Kim, Y.3    Kweon, J.4    Kim, H.S.5    Bae, S.6    Kim, J.S.7
  • 4
    • 0034023407 scopus 로고    scopus 로고
    • Short-lived green fluorescent proteins for quantifying ubiquitin/proteasome-dependent proteolysis in living cells
    • Dantuma N.P., Lindsten K., Glas R., Jellne M., Masucci M.G. Short-lived green fluorescent proteins for quantifying ubiquitin/proteasome-dependent proteolysis in living cells. Nat. Biotechnol. 2000, 18:538-543.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 538-543
    • Dantuma, N.P.1    Lindsten, K.2    Glas, R.3    Jellne, M.4    Masucci, M.G.5
  • 6
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B., Hillier L., Wendl M.C., Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8:175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 7
    • 84923275611 scopus 로고    scopus 로고
    • Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases
    • Frock R.L., Hu J., Meyers R.M., Ho Y.J., Kii E., Alt F.W. Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases. Nat. Biotechnol. 2015, 33:179-186.
    • (2015) Nat. Biotechnol. , vol.33 , pp. 179-186
    • Frock, R.L.1    Hu, J.2    Meyers, R.M.3    Ho, Y.J.4    Kii, E.5    Alt, F.W.6
  • 9
    • 84896929630 scopus 로고    scopus 로고
    • Improving CRISPR-Cas nuclease specificity using truncated guide RNAs
    • Fu Y., Sander J.D., Reyon D., Cascio V.M., Joung J.K. Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat. Biotechnol. 2014, 32:279-284.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 279-284
    • Fu, Y.1    Sander, J.D.2    Reyon, D.3    Cascio, V.M.4    Joung, J.K.5
  • 11
    • 84884591984 scopus 로고    scopus 로고
    • Genetic instability: tipping the balance
    • Janssen A., Medema R.H. Genetic instability: tipping the balance. Oncogene 2013, 32:4459-4470.
    • (2013) Oncogene , vol.32 , pp. 4459-4470
    • Janssen, A.1    Medema, R.H.2
  • 12
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M., Chylinski K., Fonfara I., Hauer M., Doudna J.A., Charpentier E. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 2012, 337:816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 14
    • 0035525955 scopus 로고    scopus 로고
    • Safety considerations in vector development
    • Kappes J.C., Wu X. Safety considerations in vector development. Somat. Cell Mol. Genet. 2001, 26:147-158.
    • (2001) Somat. Cell Mol. Genet. , vol.26 , pp. 147-158
    • Kappes, J.C.1    Wu, X.2
  • 15
    • 0037267647 scopus 로고    scopus 로고
    • Production of trans-lentiviral vector with predictable safety
    • Kappes J.C., Wu X., Wakefield J.K. Production of trans-lentiviral vector with predictable safety. Methods Mol. Med. 2003, 76:449-465.
    • (2003) Methods Mol. Med. , vol.76 , pp. 449-465
    • Kappes, J.C.1    Wu, X.2    Wakefield, J.K.3
  • 16
    • 84898665052 scopus 로고    scopus 로고
    • Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library
    • Koike-Yusa H., Li Y., Tan E.P., Velasco-Herrera Mdel C., Yusa K. Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library. Nat. Biotechnol. 2014, 32:267-273.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 267-273
    • Koike-Yusa, H.1    Li, Y.2    Tan, E.P.3    Velasco-Herrera Mdel, C.4    Yusa, K.5
  • 19
    • 84884155038 scopus 로고    scopus 로고
    • High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity
    • Pattanayak V., Lin S., Guilinger J.P., Ma E., Doudna J.A., Liu D.R. High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity. Nat. Biotechnol. 2013, 31:839-843.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 839-843
    • Pattanayak, V.1    Lin, S.2    Guilinger, J.P.3    Ma, E.4    Doudna, J.A.5    Liu, D.R.6
  • 22
    • 0034840624 scopus 로고    scopus 로고
    • RNA oligonucleotide synthesis via 5'-silyl-2'-orthoester chemistry
    • Scaringe S.A. RNA oligonucleotide synthesis via 5'-silyl-2'-orthoester chemistry. Methods 2001, 23:206-217.
    • (2001) Methods , vol.23 , pp. 206-217
    • Scaringe, S.A.1
  • 30
    • 84904010334 scopus 로고    scopus 로고
    • Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing
    • Veres A., Gosis B.S., Ding Q., Collins R., Ragavendran A., Brand H., Erdin S., Talkowski M.E., Musunuru K. Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing. Cell Stem Cell 2014, 15:27-30.
    • (2014) Cell Stem Cell , vol.15 , pp. 27-30
    • Veres, A.1    Gosis, B.S.2    Ding, Q.3    Collins, R.4    Ragavendran, A.5    Brand, H.6    Erdin, S.7    Talkowski, M.E.8    Musunuru, K.9
  • 31
    • 84924666891 scopus 로고    scopus 로고
    • Comparison of T7E1 and surveyor mismatch cleavage assays to detect mutations triggered by engineered nucleases
    • Vouillot L., Thelie A., Pollet N. Comparison of T7E1 and surveyor mismatch cleavage assays to detect mutations triggered by engineered nucleases. G3 (Bethesda) 2015, 5:407-415.
    • (2015) G3 (Bethesda) , vol.5 , pp. 407-415
    • Vouillot, L.1    Thelie, A.2    Pollet, N.3
  • 32
    • 84892749369 scopus 로고    scopus 로고
    • Genetic screens in human cells using the CRISPR-Cas9 system
    • Wang T., Wei J.J., Sabatini D.M., Lander E.S. Genetic screens in human cells using the CRISPR-Cas9 system. Science 2014, 343:80-84.
    • (2014) Science , vol.343 , pp. 80-84
    • Wang, T.1    Wei, J.J.2    Sabatini, D.M.3    Lander, E.S.4
  • 33
    • 84923221641 scopus 로고    scopus 로고
    • Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors
    • Wang X., Wang Y., Wu X., Wang J., Wang Y., Qiu Z., Chang T., Huang H., Lin R.J., Yee J.K. Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors. Nat. Biotechnol. 2015, 33:175-178.
    • (2015) Nat. Biotechnol. , vol.33 , pp. 175-178
    • Wang, X.1    Wang, Y.2    Wu, X.3    Wang, J.4    Wang, Y.5    Qiu, Z.6    Chang, T.7    Huang, H.8    Lin, R.J.9    Yee, J.K.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.