Enzyme-free and isothermal detection of microRNA based on click-chemical ligation-assisted hybridization coupled with hybridization chain reaction signal amplification

Analytical and Bioanalytical Chemistry

Volumn 407, Issue 14, 2015, Pages 4165-4172

  Oishi, Motoi ^a  

^a UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

Click chemical ligation; DNA; Hybridization chain reaction; Magnetic bead; MicroRNA

Indexed keywords

CHAINS; CHEMICAL DETECTION; DNA; ENZYMES; FLUORESCENCE; ISOTHERMS; MAGNETIC SEPARATION; MAGNETISM; PROBES; RNA; SIGNAL DETECTION;

CHEMICAL LIGATION; FLUORESCENT SIGNALS; HYBRIDIZATION CHAIN REACTIONS; ISOTHERMAL CONDITIONS; MAGNETIC BEADS; MICRORNAS; QUANTITATIVE REVERSE TRANSCRIPTION-POLYMERASE CHAIN REACTION; SIGNAL AMPLIFICATIONS;

POLYMERASE CHAIN REACTION;

BOVINAE;

DNA; ENZYME; MICRORNA;

CHEMISTRY; CLICK CHEMISTRY;

CLICK CHEMISTRY; DNA; ENZYMES; MICRORNAS;

EID: 84938053501     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-015-8629-y     Document Type: Article

References (29)

1. Ambros A (2004) The functions of animal microRNAs. Nature 431:350-355
2. Esquela-Kerscher A, Slack FJ (2006) Oncomirs - microRNAs with a role in cancer. Nat Rev Cancer 6:259-269
3. Johnson SM, Grosshans H, Shingara J, Byrom M, Jarvis R, Cheng A, Labourier E, Reinert KL, Brown D, Slack FJ (2005) RAS is regulated by the let-7 microRNA family. Cell 120:635-647
4. Stahlhut-Espinosa CE, Slack FJ (2006) The role of microRNAs in cancer. J Biol Med 79:131-140
5. Lee YS, Dutta A (2009) MicroRNAs in cancer. Annu Rev Pathol 4:199-227
6. Di Leva G, Croce CM (2010) Roles of small RNAs in tumor formation. Trends Mol Med 16:257-267
7. Mitchell PS, Parkin RK, Kroh EM, Fritz BR, Wyman SK, Pogosova-Agadjanyan EL, Peterson A, Noteboom J, O'Briant KC, Allen A, Lin DW, Urban N, Drescher CW, Knudsen BS, Stirewalt DL, Gentleman R, Vessella RL, Nelson PS, Martin DB, Tewari M (2008) Circulating microRNAs as stable blood-based markers for cancer detection. Proc Natl Acad Sci U S A 105:10513-10518
8. Arroyo JD, Chevillet JR, Kroh EM, Ruf IK, Pritchard CC, Gibson DF, Mitchell PS, Bennett CF, Pogosova-Agadjanyan EL, Stirewalt DL, Tait JF, Tewari M (2011) Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma. Proc Natl Acad Sci U S A 108:5003-5008
9. Kosaka N, Iguchi H, Ochiya T (2010) Circulating microRNA in body fluid: a new potential biomarker for cancer diagnosis and prognosis. Cancer Sci 101:2087-2092
10. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, Lao KQ, Livak KJ, Guegler KJ (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33:e179
11. Ro S, Park C, Jin J, Sanders KM, Yan WA (2006) A PCR-based method for detection and quantification of small RNAs. Biochem Biophys Res Commun 351:756-763
12. Konet DS, Mezencio JMS, Babcock G, Brown FJ (2000) Inhibitors of RT-PCR in serum. J Virol Methods 84:95-98
13. Al-Soud WA, Rådström P (2000) Effects of amplification facilitators on diagnostic PCR in the presence of blood, feces, and meat. J Clin Microbiol 38:4463-4470
14. Kermekchiev MB, Kirilova LI, Vail EE, Barnes WM (2009) Mutants of Taq DNA polymerase resistant to PCR inhibitors allow DNA amplification from whole blood and crude soil samples. Nucleic Acids Res 37:e40
15. Schrader C, Schielke A, Ellerbroek L, Johne R (2012) PCR inhibitors - occurrence, properties and removal. J Appl Microbiol 113:1014-1026
16. Dirks RM, Pierce NA (2004) Triggered amplification by hybridization chain reaction. Proc Natl Acad Sci U S A 101:15275-15278
17. Venkataraman S, Dirks RM, Rothemund PWK, Winfree E, Pierce NA (2007) An autonomous polymerization motor powered by DNA hybridization. Nat Nanotechnol 2:490-494
18. Nilsson M, Barbany G, Antson DO, Gertow K, Landegren U (2000) Enhanced detection and distinction of RNA by enzymatic probe ligation. Nat Biotechnol 18:791-793
19. Favis R, Day JP, Gerry NP, Phelan Narod CS, Barany F (2000) Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2. Nat Biotechnol 18:561-564
20. Shelbourne M, Chen X, Brown T, El-Sagheer AH (2011) Fast copper-free click DNA ligation by the ring-strain promoted alkyne-azide cycloaddition reaction. Chem Commun 47:6257-6259
21. Oishi M, Nakao S, Kato D (2014) Enzyme-free fluorescent-amplified aptasensors based on target-responsive DNA strand displacement via toehold-mediated click chemical ligation. Chem Commun 50:991-993
22. Kato D, Oishi M (2014) Ultrasensitive detection of DNA and RNA based on enzyme-free click chemical ligation chain reaction on dispersed gold nanoparticles. ACS Nano 8:9988-9997
23. Ning X, Guo J, Wolfert MA, Boons GJ (2008) Visualizing metabolically labeled glycoconjugates of living cells by copper-free and fast Huisgen cycloadditions. Angew Chem Int Ed 47:2253-2255
24. Laughlin ST, Baskin JM, Amacher SL, Bertozzi CR (2008) In vivo imaging of membrane-associated glycans in developing zebrafish. Science 320:664-667
25. Zipper H, Brunner H, Bernhagen J, Vitzthum F (2004) Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications. Nucleic Acids Res 32:e103
26. Song C, Yang X, Wang K, Wang Q, Huang J, Liu J, Liu W, Liu P (2014) Label-free and non-enzymatic detection of DNA based on hybridization chain reaction amplification and dsDNA-templated copper nanoparticles. Anal Chim Acta 82:74-79
27. Yang C, Shi K, Dou B, Xiang Y, Chai Y, Yuan R (2015) In situ DNA-templated synthesis of silver nanoclusters for ultrasensitive and label-free electrochemical detection of microRNA. ACS Appl Mater Interfaces 7:1188-1193
28. Qiu X, Wang P, Cao Z (2014) Hybridization chain reaction modulated DNA-hosted silver nanoclusters for fluorescent identification of single nucleotide polymorphisms in the let-7 miRNA family. Biosens Bioelectron 60:351-357
29. Cai S, Cao Z, Lau C, Lu J (2014) Label-free technology for the amplified detection of microRNA based on the allosteric hairpin DNA switch and hybridization chain reaction. Analyst 139:6022-6027