메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages

Genome-wide high-throughput SNP discovery and genotyping for understanding natural (functional) allelic diversity and domestication patterns in wild chickpea

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

EID: 84937861838     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep12468     Document Type: Article
Times cited : (67)

References (92)
  • 1
    • 84867714759 scopus 로고    scopus 로고
    • High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.)
    • Gaur, R. et al. High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.). DNA Res. 19, 357-373 (2012).
    • (2012) DNA Res. , vol.19 , pp. 357-373
    • Gaur, R.1
  • 2
    • 84863564349 scopus 로고    scopus 로고
    • Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
    • Hiremath, P. J. et al. Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnol. J. 10, 716-732 (2012).
    • (2012) Plant Biotechnol. J. , vol.10 , pp. 716-732
    • Hiremath, P.J.1
  • 3
    • 84863143122 scopus 로고    scopus 로고
    • Current state-of-art of sequencing technologies for plant genomics research
    • Thudi, M., Li, Y., Jackson, S. A., May, G. D. & Varshney, R. K. Current state-of-art of sequencing technologies for plant genomics research. Brief Funct. Genomics 11, 3-11 (2012).
    • (2012) Brief Funct. Genomics , vol.11 , pp. 3-11
    • Thudi, M.1    Li, Y.2    Jackson, S.A.3    May, G.D.4    Varshney, R.K.5
  • 4
    • 84883746158 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping for breeding genetics and applications in chickpea and pigeonpea using the BeadXpress platform
    • Roorkiwal, M. et al. Single nucleotide polymorphism genotyping for breeding genetics and applications in chickpea and pigeonpea using the BeadXpress platform. Plant Genome 6, 1-10 (2013).
    • (2013) Plant Genome , vol.6 , pp. 1-10
    • Roorkiwal, M.1
  • 5
    • 84890872120 scopus 로고    scopus 로고
    • Genetic marker discovery, intraspecific linkage map construction and quantitative trait locus analysis of Ascochyta blight resistance in chickpea (Cicer arietinum L.)
    • Stephens, A. et al. Genetic marker discovery, intraspecific linkage map construction and quantitative trait locus analysis of Ascochyta blight resistance in chickpea (Cicer arietinum L.). Mol. Breed. 33, 297-313 (2014).
    • (2014) Mol. Breed. , vol.33 , pp. 297-313
    • Stephens, A.1
  • 6
    • 84875176954 scopus 로고    scopus 로고
    • Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
    • Varshney, R. K. et al. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat. Biotechnol. 31, 240-246 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 240-246
    • Varshney, R.K.1
  • 7
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity and dynamics
    • Schnable, P. S. et al. The B73 maize genome: complexity, diversity and dynamics. Science 326, 1112-1115 (2009).
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1
  • 8
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
    • Elshire, R. J. et al. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One 6, e19379 (2011).
    • (2011) PLoS One , vol.6 , pp. e19379
    • Elshire, R.J.1
  • 9
    • 84857520461 scopus 로고    scopus 로고
    • Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
    • Poland, J. A., Brown, P. J., Sorrells, M. E. & Jannink, J. L. Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS One 7, e32253 (2012).
    • (2012) PLoS One , vol.7 , pp. e32253
    • Poland, J.A.1    Brown, P.J.2    Sorrells, M.E.3    Jannink, J.L.4
  • 10
    • 84872789979 scopus 로고    scopus 로고
    • An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping
    • Sonah, H. et al. An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping. PLoS One 8, e54603 (2013).
    • (2013) PLoS One , vol.8 , pp. e54603
    • Sonah, H.1
  • 11
    • 84879437642 scopus 로고    scopus 로고
    • Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production
    • Thurber, C. S., Ma, J. M., Higgins, R. H. & Brown, P. J. Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production. Genome Biol. 14, R68 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R68
    • Thurber, C.S.1    Ma, J.M.2    Higgins, R.H.3    Brown, P.J.4
  • 12
    • 84872197099 scopus 로고    scopus 로고
    • Population genomic and genome-wide association studies of agroclimatic traits in sorghum
    • Morris, G. P. et al. Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc. Natl. Acad. Sci. USA 110, 453-458 (2013).
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 453-458
    • Morris, G.P.1
  • 13
    • 84887613153 scopus 로고    scopus 로고
    • Bridging the genotyping gap: Using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations
    • Spindel, J. et al. Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Theor. Appl. Genet. 126, 2699-2716 (2013).
    • (2013) Theor. Appl. Genet. , vol.126 , pp. 2699-2716
    • Spindel, J.1
  • 14
    • 84874632677 scopus 로고    scopus 로고
    • Genome wide allele frequency fingerprints (GWAFFs) of populations via genotyping by sequencing
    • Byrne, S. et al. Genome wide allele frequency fingerprints (GWAFFs) of populations via genotyping by sequencing. PLoS One 8, e57438 (2013).
    • (2013) PLoS One , vol.8 , pp. e57438
    • Byrne, S.1
  • 15
    • 84889073191 scopus 로고    scopus 로고
    • Genomic prediction in maize breeding populations with genotyping-by-sequencing
    • Crossa, J. et al. Genomic prediction in maize breeding populations with genotyping-by-sequencing. G3 (Bethesda) 3, 1903-1926 (2013).
    • (2013) G3 (Bethesda) , vol.3 , pp. 1903-1926
    • Crossa, J.1
  • 16
    • 84885672827 scopus 로고    scopus 로고
    • Barley whole exome capture: A tool for genomic research in the genus Hordeum and beyond
    • Mascher, M. et al. Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. Plant J. 76, 494-505 (2013).
    • (2013) Plant J. , vol.76 , pp. 494-505
    • Mascher, M.1
  • 17
    • 84877268772 scopus 로고    scopus 로고
    • A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato
    • Uitdewilligen, J. G. et al. A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato. PLoS One 8, e62355 (2013).
    • (2013) PLoS One , vol.8 , pp. e62355
    • Uitdewilligen, J.G.1
  • 18
    • 84897452326 scopus 로고    scopus 로고
    • Genome wide association mapping of Sclerotinia sclerotiorum resistance in soybean with a genotyping-by-sequencing approach
    • Bastien, M., Sonah, H. & Belzile, F. Genome wide association mapping of Sclerotinia sclerotiorum resistance in soybean with a genotyping-by-sequencing approach. Plant Genome 7, 1-13 (2014).
    • (2014) Plant Genome , vol.7 , pp. 1-13
    • Bastien, M.1    Sonah, H.2    Belzile, F.3
  • 19
    • 84901350188 scopus 로고    scopus 로고
    • Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses
    • Huang, B. E., Raghavan, C., Mauleon, R., Broman, K. W. & Leung, H. Efficient imputation of missing markers in low-coverage genotyping-by-sequencing data from multi-parental crosses. Genetics 197, 401-404 (2014).
    • (2014) Genetics , vol.197 , pp. 401-404
    • Huang, B.E.1    Raghavan, C.2    Mauleon, R.3    Broman, K.W.4    Leung, H.5
  • 20
    • 84893160089 scopus 로고    scopus 로고
    • An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley
    • Liu, H. et al. An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley. BMC Genomics 15, 104 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 104
    • Liu, H.1
  • 21
    • 84903735544 scopus 로고    scopus 로고
    • Rapid identification of alleles at the soybean maturity gene E3 using genotyping by sequencing and a haplotype-based approach
    • Tardivel, A., Sonah, H., Belzile, F. & O'Donoughue, L. S. Rapid identification of alleles at the soybean maturity gene E3 using genotyping by sequencing and a haplotype-based approach. Plant Genome 7, 1-9 (2014).
    • (2014) Plant Genome , vol.7 , pp. 1-9
    • Tardivel, A.1    Sonah, H.2    Belzile, F.3    O'Donoughue, L.S.4
  • 22
    • 84878341271 scopus 로고    scopus 로고
    • A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)
    • Jain, M. et al. A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.). Plant J. 74, 715-729 (2013).
    • (2013) Plant J. , vol.74 , pp. 715-729
    • Jain, M.1
  • 23
    • 0000663893 scopus 로고
    • The origin of chickpea (Cicer arietinum L.)
    • Ladizinsky, G. & Adler, A. The origin of chickpea (Cicer arietinum L.). Euphytica 25, 211-217 (1976a).
    • (1976) Euphytica , vol.25 , pp. 211-217
    • Ladizinsky, G.1    Adler, A.2
  • 24
    • 0344530834 scopus 로고    scopus 로고
    • Evolution of cultivated chickpea: Four bottlenecks limit diversity and constrain adaptation
    • Abbo, S., Berger, J. & Turner, N. C. Evolution of cultivated chickpea: four bottlenecks limit diversity and constrain adaptation. Funct. Plant Biol. 30, 1081-1087 (2003).
    • (2003) Funct. Plant Biol. , vol.30 , pp. 1081-1087
    • Abbo, S.1    Berger, J.2    Turner, N.C.3
  • 25
    • 0037847546 scopus 로고    scopus 로고
    • Ecogeography of annual wild cicer species
    • Berger, J. D., Abbo, S. & Turner, N. C. Ecogeography of Annual Wild Cicer Species. Crop Sci. 43, 1076-1090 (2003).
    • (2003) Crop Sci. , vol.43 , pp. 1076-1090
    • Berger, J.D.1    Abbo, S.2    Turner, N.C.3
  • 26
    • 28444492322 scopus 로고    scopus 로고
    • Evolution in the genus Cicer vernalisation response and low temperature pod set in chickpea (C. Arietinum L) and its annual wild relatives
    • Berger, J. D., Buck, R., Henzell, J. M. & Turner, N. C. Evolution in the genus Cicer vernalisation response and low temperature pod set in chickpea (C. arietinum L.) and its annual wild relatives. Aust. J. Agric. Res. 56, 1191-1200 (2005).
    • (2005) Aust. J. Agric. Res. , vol.56 , pp. 1191-1200
    • Berger, J.D.1    Buck, R.2    Henzell, J.M.3    Turner, N.C.4
  • 27
    • 58149460233 scopus 로고    scopus 로고
    • A note on the evolution of kabuli chickpeas as shown by induced mutations in Cicer reticulatum Ladizinsky
    • Toker, C. A note on the evolution of kabuli chickpeas as shown by induced mutations in Cicer reticulatum Ladizinsky. Genet. Resour. Crop Evol. 56, 7-12 (2009).
    • (2009) Genet. Resour. Crop Evol. , vol.56 , pp. 7-12
    • Toker, C.1
  • 28
  • 29
    • 84907185297 scopus 로고    scopus 로고
    • Natural allelic diversity, genetic structure and linkage disequilibrium pattern in wild chickpea
    • Saxena, M. S. et al. Natural allelic diversity, genetic structure and linkage disequilibrium pattern in wild chickpea. PLoS One 9, e107484 (2014).
    • (2014) PLoS One , vol.9 , pp. e107484
    • Saxena, M.S.1
  • 30
    • 0028814589 scopus 로고
    • Additional sources of tolerance to cold in cultivated and wild Cicer species
    • Singh, K. B., Malhotra, R. S. & Saxena, M. C. Additional sources of tolerance to cold in cultivated and wild Cicer species. Crop Sci. 35, 1491-1497 (1995).
    • (1995) Crop Sci. , vol.35 , pp. 1491-1497
    • Singh, K.B.1    Malhotra, R.S.2    Saxena, M.C.3
  • 31
    • 0033694577 scopus 로고    scopus 로고
    • A linkage map of the chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. Arietinum × C. Reticulatum cross: Localization of resistance genes for fusarium wilt races 4 and 5
    • Winter, P. et al. A linkage map of the chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum × C. reticulatum cross: localization of resistance genes for fusarium wilt races 4 and 5. Theor. Appl. Genet. 101, 1155-1163 (2000).
    • (2000) Theor. Appl. Genet. , vol.101 , pp. 1155-1163
    • Winter, P.1
  • 32
    • 0041374092 scopus 로고    scopus 로고
    • Preliminary investigation of QTLs associated with seedling resistance to Ascochyta blight from Cicer echinospermum, a wild relative of chickpea
    • Collard, B. C., Pang, E. C., Ades, P. K. & Taylor, P. W. Preliminary investigation of QTLs associated with seedling resistance to Ascochyta blight from Cicer echinospermum, a wild relative of chickpea. Theor. Appl. Genet. 107, 719-729 (2003).
    • (2003) Theor. Appl. Genet. , vol.107 , pp. 719-729
    • Collard, B.C.1    Pang, E.C.2    Ades, P.K.3    Taylor, P.W.4
  • 33
    • 84958635411 scopus 로고    scopus 로고
    • Using genomics to exploit grain legume biodiversity in crop improvement
    • Dwivedi, S. L. et al. Using genomics to exploit grain legume biodiversity in crop improvement. Plant Breed. Rev. 26, 171-357 (2005).
    • (2005) Plant Breed. Rev. , vol.26 , pp. 171-357
    • Dwivedi, S.L.1
  • 34
    • 26444469986 scopus 로고    scopus 로고
    • Evaluation of Cicer species for resistance to Ascochyta blight
    • Shah, T. M. et al. Evaluation of Cicer species for resistance to Ascochyta blight. Pak. J. Bot. 37, 431-438 (2005).
    • (2005) Pak. J. Bot. , vol.37 , pp. 431-438
    • Shah, T.M.1
  • 35
    • 84855716293 scopus 로고    scopus 로고
    • Genomic tools and germplasm diversity for chickpea improvement
    • Upadhyaya, H. D. et al. Genomic tools and germplasm diversity for chickpea improvement. Plant Genet. Resour. 9, 45-58 (2011).
    • (2011) Plant Genet. Resour. , vol.9 , pp. 45-58
    • Upadhyaya, H.D.1
  • 36
    • 0036927509 scopus 로고    scopus 로고
    • Analysis of genetic relationships among perennial and annual Cicer species growing in Turkey using RAPD markers
    • Sudupak, M., Akkaya, M. & Kence, A. Analysis of genetic relationships among perennial and annual Cicer species growing in Turkey using RAPD markers. Theor. Appl. Genet. 105, 1220-1228 (2002).
    • (2002) Theor. Appl. Genet. , vol.105 , pp. 1220-1228
    • Sudupak, M.1    Akkaya, M.2    Kence, A.3
  • 37
    • 1842635208 scopus 로고    scopus 로고
    • Genetic relationships among perennial and annual Cicer species growing in Turkey assessed by AFLP fingerprinting
    • Sudupak, M. A., Akkaya, M. S. & Kence, A. Genetic relationships among perennial and annual Cicer species growing in Turkey assessed by AFLP fingerprinting. Theor. Appl. Genet. 108, 937-944 (2004).
    • (2004) Theor. Appl. Genet. , vol.108 , pp. 937-944
    • Sudupak, M.A.1    Akkaya, M.S.2    Kence, A.3
  • 38
    • 2342505879 scopus 로고    scopus 로고
    • Genetic diversity estimates in Cicer using AFLP analysis
    • Nguyen, T. T., Taylor, P. W. J., Redden, R. J. & Ford, R. Genetic diversity estimates in Cicer using AFLP analysis. Plant Breed. 123, 173-179 (2004).
    • (2004) Plant Breed. , vol.123 , pp. 173-179
    • Nguyen, T.T.1    Taylor, P.W.J.2    Redden, R.J.3    Ford, R.4
  • 39
    • 18944385543 scopus 로고    scopus 로고
    • The use of microsatellite markers in the annual and perennial Cicer species growing in Turkey
    • Cingilli, H., Altinkut, A. & Akcin, A. The use of microsatellite markers in the annual and perennial Cicer species growing in Turkey. Biology 60, 93-98 (2005).
    • (2005) Biology , vol.60 , pp. 93-98
    • Cingilli, H.1    Altinkut, A.2    Akcin, A.3
  • 40
    • 13244298507 scopus 로고    scopus 로고
    • Geographical patterns of the genetic variation in the world collections of wild annual Cicer characterized by amplified fragment length polymorphisms
    • Shan, F., Clarke, H. C., Plummer, J. A., Yan, G. & Siddique, K. H. M. Geographical patterns of the genetic variation in the world collections of wild annual Cicer characterized by amplified fragment length polymorphisms. Theor. Appl. Genet. 110, 381-391 (2005).
    • (2005) Theor. Appl. Genet. , vol.110 , pp. 381-391
    • Shan, F.1    Clarke, H.C.2    Plummer, J.A.3    Yan, G.4    Siddique, K.H.M.5
  • 41
    • 29144500432 scopus 로고    scopus 로고
    • Identification of microsatellite markers from Cicer reticulatum: Molecular variation and phylogenetic analysis
    • Sethy, N. K., Choudhary, S., Shokeen, B. & Bhatia, S. Identification of microsatellite markers from Cicer reticulatum: molecular variation and phylogenetic analysis. Theor. Appl. Genet. 112, 347-357 (2006).
    • (2006) Theor. Appl. Genet. , vol.112 , pp. 347-357
    • Sethy, N.K.1    Choudhary, S.2    Shokeen, B.3    Bhatia, S.4
  • 42
    • 56549122163 scopus 로고    scopus 로고
    • Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.)
    • Upadhyaya, H. D. et al. Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biol. 8, 106 (2008).
    • (2008) BMC Plant Biol. , vol.8 , pp. 106
    • Upadhyaya, H.D.1
  • 43
    • 77953129466 scopus 로고    scopus 로고
    • Integration of novel SSR gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome
    • Nayak, S. N. et al. Integration of novel SSR gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theor. Appl. Genet. 120, 1415-1441 (2010).
    • (2010) Theor. Appl. Genet. , vol.120 , pp. 1415-1441
    • Nayak, S.N.1
  • 44
    • 84864092650 scopus 로고    scopus 로고
    • Molecular diversity and phylogeny in geographical collection of chickpea (Cicer sp.) accessions
    • Bharadwaj, C. et al. Molecular diversity and phylogeny in geographical collection of chickpea (Cicer sp.) accessions. J. Genet. 90, e94-100 (2011).
    • (2011) J. Genet. , vol.90 , pp. e94-100
    • Bharadwaj, C.1
  • 45
    • 79959287492 scopus 로고    scopus 로고
    • Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)
    • Gujaria, N. et al. Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Theor. Appl. Genet. 122, 1577-1589 (2011).
    • (2011) Theor. Appl. Genet. , vol.122 , pp. 1577-1589
    • Gujaria, N.1
  • 46
    • 80255132032 scopus 로고    scopus 로고
    • Genetic diversity of Iranian accessions, improved lines of chickpea (Cicer arietinum L.) and their wild relatives by using simple sequence repeats
    • Saeed, A. et al. Genetic diversity of Iranian accessions, improved lines of chickpea (Cicer arietinum L.) and their wild relatives by using simple sequence repeats. Plant Mol. Biol. Rep. 29, 848-858 (2011).
    • (2011) Plant Mol. Biol. Rep. , vol.29 , pp. 848-858
    • Saeed, A.1
  • 47
    • 84930472856 scopus 로고    scopus 로고
    • Genetic structure and diversity analysis of the primary gene pool of chickpea using SSR markers
    • Choudhary, P. et al. Genetic structure and diversity analysis of the primary gene pool of chickpea using SSR markers. Genet. Mol. Res. 11, 891-905 (2012).
    • (2012) Genet. Mol. Res. , vol.11 , pp. 891-905
    • Choudhary, P.1
  • 48
    • 84979500040 scopus 로고    scopus 로고
    • Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers
    • Roorkiwal, M. et al. Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers. Front. Plant Sci. 5, 248 (2014).
    • (2014) Front. Plant Sci. , vol.5 , pp. 248
    • Roorkiwal, M.1
  • 49
    • 84904734147 scopus 로고    scopus 로고
    • A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies
    • Ruperao, P. et al. A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies. Plant Biotechnol. J. 12, 778-786 (2014).
    • (2014) Plant Biotechnol. J. , vol.12 , pp. 778-786
    • Ruperao, P.1
  • 50
    • 58549095442 scopus 로고    scopus 로고
    • Development of chickpea EST-SSR markers and analysis of allelic variation across related species
    • Choudhary, S., Sethy, N. K., Shokeen, B. & Bhatia, S. Development of chickpea EST-SSR markers and analysis of allelic variation across related species. Theor. Appl. Genet. 118, 591-608 (2009).
    • (2009) Theor. Appl. Genet. , vol.118 , pp. 591-608
    • Choudhary, S.1    Sethy, N.K.2    Shokeen, B.3    Bhatia, S.4
  • 51
    • 84890418306 scopus 로고    scopus 로고
    • Characterization and evaluation of wild annual Cicer species for agro-morphological traits and major biotic stresses under northwestern Indian conditions
    • Singh, M. et al. Characterization and evaluation of wild annual Cicer species for agro-morphological traits and major biotic stresses under northwestern Indian conditions. Crop Sci. 54, 229-239 (2014).
    • (2014) Crop Sci. , vol.54 , pp. 229-239
    • Singh, M.1
  • 52
    • 0033914217 scopus 로고    scopus 로고
    • Conservation and variability of sequence-tagged microsatellite sites from chickpea (Cicer arietinum L.) within the genus Cicer
    • Choumane, W., Winter, P., Weigand, F. & Kahl, G. Conservation and variability of sequence-tagged microsatellite sites from chickpea (Cicer arietinum L.) within the genus Cicer. Theor. Appl. Genet. 101, 269-278 (2000).
    • (2000) Theor. Appl. Genet. , vol.101 , pp. 269-278
    • Choumane, W.1    Winter, P.2    Weigand, F.3    Kahl, G.4
  • 53
    • 0036035311 scopus 로고    scopus 로고
    • Cultivar identification and genetic relationship among selected breeding lines and cultivars in chickpea (Cicer arietinum L.)
    • Chowdhury, M. A., Vandenberg, V. & Warkentin, T. Cultivar identification and genetic relationship among selected breeding lines and cultivars in chickpea (Cicer arietinum L.). Euphytica 127, 317-325 (2002).
    • (2002) Euphytica , vol.127 , pp. 317-325
    • Chowdhury, M.A.1    Vandenberg, V.2    Warkentin, T.3
  • 54
    • 0036945394 scopus 로고    scopus 로고
    • Phylogenetic analysis in the genus Cicer and cultivated chickpea using RAPD and ISSR markers
    • Iruela, M. et al. Phylogenetic analysis in the genus Cicer and cultivated chickpea using RAPD and ISSR markers. Theor. Appl. Genet. 104, 643-651 (2002).
    • (2002) Theor. Appl. Genet. , vol.104 , pp. 643-651
    • Iruela, M.1
  • 55
    • 0346666928 scopus 로고    scopus 로고
    • Identification of an STMS marker for the double-podding gene in chickpea
    • Rajesh, N. et al. Identification of an STMS marker for the double-podding gene in chickpea. Theor. Appl. Genet. 105, 604-607 (2002).
    • (2002) Theor. Appl. Genet. , vol.105 , pp. 604-607
    • Rajesh, N.1
  • 56
    • 0000954842 scopus 로고    scopus 로고
    • Genetics of flowering time in chickpea and its bearing on productivity in semiarid environments
    • Elsevier
    • Kumar, J. & Abbo, S. Genetics of flowering time in chickpea and its bearing on productivity in semiarid environments. In: Advances in Agronomy. Elsevier, pp. 107-138 (2001).
    • (2001) Advances in Agronomy , pp. 107-138
    • Kumar, J.1    Abbo, S.2
  • 57
    • 33645464049 scopus 로고    scopus 로고
    • How fast was wild wheat domesticated?
    • Tanno, K. & Willcox, G. How fast was wild wheat domesticated? Science 311, 1886 (2006).
    • (2006) Science , vol.311 , pp. 1886
    • Tanno, K.1    Willcox, G.2
  • 58
    • 70450204614 scopus 로고    scopus 로고
    • A first-generation haplotype map of maize
    • Gore, M. A. et al. A first-generation haplotype map of maize. Science 326, 1115-1117 (2009).
    • (2009) Science , vol.326 , pp. 1115-1117
    • Gore, M.A.1
  • 59
    • 80053388300 scopus 로고    scopus 로고
    • Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa
    • Zhao, K. et al. Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat. Commun. 2, 467 (2011).
    • (2011) Nat. Commun. , vol.2 , pp. 467
    • Zhao, K.1
  • 60
    • 84655176647 scopus 로고    scopus 로고
    • Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm
    • Huang, X. et al. Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat. Genet. 44, 32-39 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 32-39
    • Huang, X.1
  • 61
    • 34249111187 scopus 로고    scopus 로고
    • Highly variable patterns of linkage disequilibrium in multiple soybean populations
    • Hyten, D. L. et al. Highly variable patterns of linkage disequilibrium in multiple soybean populations. Genetics 175, 1937-1944 (2007).
    • (2007) Genetics , vol.175 , pp. 1937-1944
    • Hyten, D.L.1
  • 62
    • 78649479141 scopus 로고    scopus 로고
    • Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
    • Lam, H. M. et al. Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat. Genet. 42, 1053-1059 (2010).
    • (2010) Nat. Genet. , vol.42 , pp. 1053-1059
    • Lam, H.M.1
  • 63
    • 84866900600 scopus 로고    scopus 로고
    • Genetic structure and linkage disequilibrium pattern of a rapeseed (Brassica napus L.) association mapping panel revealed by microsatellites
    • Xiao, Y. et al. Genetic structure and linkage disequilibrium pattern of a rapeseed (Brassica napus L.) association mapping panel revealed by microsatellites. Theor. Appl. Genet. 125, 437-447 (2012).
    • (2012) Theor. Appl. Genet. , vol.125 , pp. 437-447
    • Xiao, Y.1
  • 64
    • 84861875050 scopus 로고    scopus 로고
    • Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize
    • Riedelsheimer, C. et al. Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proc. Natl. Acad. Sci. USA 109, 8872-8877 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 8872-8877
    • Riedelsheimer, C.1
  • 65
    • 84866927904 scopus 로고    scopus 로고
    • Patterns of linkage disequilibrium and association mapping in diploid alfalfa (M. Sativa L.)
    • Sakiroglu, M. et al. Patterns of linkage disequilibrium and association mapping in diploid alfalfa (M. sativa L.). Theor. Appl. Genet. 125, 577-590 (2012).
    • (2012) Theor. Appl. Genet. , vol.125 , pp. 577-590
    • Sakiroglu, M.1
  • 66
    • 77953233453 scopus 로고    scopus 로고
    • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
    • Atwell, S. et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465, 627-631 (2010).
    • (2010) Nature , vol.465 , pp. 627-631
    • Atwell, S.1
  • 67
    • 80054797858 scopus 로고    scopus 로고
    • Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula
    • Branca, A. et al. Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula. Proc. Natl. Acad. Sci. USA 108, E864-E870 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. E864-E870
    • Branca, A.1
  • 68
    • 77149136395 scopus 로고    scopus 로고
    • DNA polymorphisms and haplotype patterns of transcription factors involved in barley endosperm development are associated with key agronomic traits
    • Haseneyer, G. et al. DNA polymorphisms and haplotype patterns of transcription factors involved in barley endosperm development are associated with key agronomic traits. BMC Plant Biol. 10, 5 (2010).
    • (2010) BMC Plant Biol. , vol.10 , pp. 5
    • Haseneyer, G.1
  • 69
    • 81255166261 scopus 로고    scopus 로고
    • Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.)
    • Varshney, R. K. et al. Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.). Field Crops Res. 126, 171-180 (2012).
    • (2012) Field Crops Res. , vol.126 , pp. 171-180
    • Varshney, R.K.1
  • 70
    • 33750038248 scopus 로고    scopus 로고
    • Nucleotide diversity in starch synthase IIa and validation of single nucleotide polymorphisms in relation to starch gelatinization temperature and other physicochemical properties in rice (Oryza sativa L.)
    • Bao, J. S., Corke, H. & Sun, M. Nucleotide diversity in starch synthase IIa and validation of single nucleotide polymorphisms in relation to starch gelatinization temperature and other physicochemical properties in rice (Oryza sativa L.). Theor. Appl. Genet. 113, 1171-1183 (2006).
    • (2006) Theor. Appl. Genet. , vol.113 , pp. 1171-1183
    • Bao, J.S.1    Corke, H.2    Sun, M.3
  • 71
    • 33744830059 scopus 로고    scopus 로고
    • An SNP caused loss of seed shattering during rice domestication
    • Konishi, S. et al. An SNP caused loss of seed shattering during rice domestication. Science 312, 1392-1396 (2006).
    • (2006) Science , vol.312 , pp. 1392-1396
    • Konishi, S.1
  • 72
    • 78650601870 scopus 로고    scopus 로고
    • Linking differential domain functions of the GS3 protein to natural variation of grain size in rice
    • Mao, H. et al. Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Proc. Natl. Acad. Sci. USA 107, 19579-19584 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 19579-19584
    • Mao, H.1
  • 73
    • 84888159043 scopus 로고    scopus 로고
    • Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth
    • Li, S. et al. Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth. Nat. Comm. 4, 2793 (2013).
    • (2013) Nat. Comm. , vol.4 , pp. 2793
    • Li, S.1
  • 74
    • 84896735595 scopus 로고    scopus 로고
    • The acid phosphatase-encoding gene GmACP1 contributes to soybean tolerance to low-phosphorus stress
    • Zhang, D. et al. The acid phosphatase-encoding gene GmACP1 contributes to soybean tolerance to low-phosphorus stress. PloS Genetics 10, e1004061 (2014).
    • (2014) PloS Genetics , vol.10 , pp. e1004061
    • Zhang, D.1
  • 75
    • 34547416085 scopus 로고    scopus 로고
    • Population derived from a kabuli x desi cross
    • Cobos, M. J. et al. Population derived from a kabuli x desi cross. Ann. Appl. Biol. 151, 33-42 (2007).
    • (2007) Ann. Appl. Biol. , vol.151 , pp. 33-42
    • Cobos, M.J.1
  • 76
    • 58749090349 scopus 로고    scopus 로고
    • Genetic analysis of agronomic traits in a wide cross of chickpea
    • Cobos, M. J. et al. Genetic analysis of agronomic traits in a wide cross of chickpea. Field Crops Res. 111, 130-136 (2009).
    • (2009) Field Crops Res. , vol.111 , pp. 130-136
    • Cobos, M.J.1
  • 77
    • 34347349067 scopus 로고    scopus 로고
    • Development of an integrated intraspecific map of chickpea (Cicer arietinum L.) using two recombinant inbred line populations
    • Radhika, P. et al. Development of an integrated intraspecific map of chickpea (Cicer arietinum L.) using two recombinant inbred line populations. Theor. Appl. Genet. 115, 209-216 (2007).
    • (2007) Theor. Appl. Genet. , vol.115 , pp. 209-216
    • Radhika, P.1
  • 78
    • 77954669285 scopus 로고    scopus 로고
    • Inheritance of seed size in chickpea (Cicer arietinum L.) and identification of QTL based on 100-seed weight and seed size index
    • Hossain, S., Ford, R., McNeil, D., Pittock, C. & Panozzo, J. F. Inheritance of seed size in chickpea (Cicer arietinum L.) and identification of QTL based on 100-seed weight and seed size index. Aust. J. Crop Sci. 4, 126-135 (2010).
    • (2010) Aust. J. Crop Sci. , vol.4 , pp. 126-135
    • Hossain, S.1    Ford, R.2    McNeil, D.3    Pittock, C.4    Panozzo, J.F.5
  • 79
    • 79955035753 scopus 로고    scopus 로고
    • Mapping of QTLs governing agronomic and yield traits in chickpea
    • Gowda, S. J. M. et al. Mapping of QTLs governing agronomic and yield traits in chickpea. J. Appl. Genet. 52, 9-21 (2011).
    • (2011) J. Appl. Genet. , vol.52 , pp. 9-21
    • Gowda, S.J.M.1
  • 80
    • 84884190218 scopus 로고    scopus 로고
    • Functionally relevant microsatellite markers from chickpea transcription factor genes for efficient genotyping applications and trait association mapping
    • Kujur, A. et al. Functionally relevant microsatellite markers from chickpea transcription factor genes for efficient genotyping applications and trait association mapping. DNA Res. 20, 355-374 (2013).
    • (2013) DNA Res. , vol.20 , pp. 355-374
    • Kujur, A.1
  • 81
    • 84901348264 scopus 로고    scopus 로고
    • An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: Identification of candidate genes for seed weight in chickpea
    • Kujur, A. et al. An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: identification of candidate genes for seed weight in chickpea. Mol. Breed. 34, 241-265 (2014).
    • (2014) Mol. Breed. , vol.34 , pp. 241-265
    • Kujur, A.1
  • 82
    • 84881554353 scopus 로고    scopus 로고
    • Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.)
    • Sabbavarapu, M. M. et al. Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.). Euphytica 193, 121-133 (2013).
    • (2013) Euphytica , vol.193 , pp. 121-133
    • Sabbavarapu, M.M.1
  • 83
    • 84861738658 scopus 로고    scopus 로고
    • Assessment of ICCV 2 x JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components
    • Vadez, V. et al. Assessment of ICCV 2 x JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTLs for seed yield and yield components. Mol. Breed. 30, 9-21 (2012).
    • (2012) Mol. Breed. , vol.30 , pp. 9-21
    • Vadez, V.1
  • 84
    • 84907169665 scopus 로고    scopus 로고
    • Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway
    • Ali, L. et al. Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway. Theor. Appl. Genet. 127, 481-488 (2014).
    • (2014) Theor. Appl. Genet. , vol.127 , pp. 481-488
    • Ali, L.1
  • 85
    • 84900397393 scopus 로고    scopus 로고
    • Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches
    • Thudi, M. et al. Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches. PloS One 9, e96758 (2014).
    • (2014) PloS One , vol.9 , pp. e96758
    • Thudi, M.1
  • 86
    • 84900445403 scopus 로고    scopus 로고
    • Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)
    • Varshney, R. K. et al. Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theor. Appl. Genet. 127, 445-462 (2014a).
    • (2014) Theor. Appl. Genet. , vol.127 , pp. 445-462
    • Varshney, R.K.1
  • 87
    • 84897377529 scopus 로고    scopus 로고
    • Marker-assisted backcrossing to introgress resistance to Fusarium wilt race 1 and Ascochyta blight in C214, an elite cultivar of chickpea
    • Varshney, R. K. et al. Marker-assisted backcrossing to introgress resistance to Fusarium wilt race 1 and Ascochyta blight in C214, an elite cultivar of chickpea. Plant Genome 7, 1-11 (2014b).
    • (2014) Plant Genome , vol.7 , pp. 1-11
    • Varshney, R.K.1
  • 88
    • 84860612585 scopus 로고    scopus 로고
    • Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.)
    • Thudi, M. et al. Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.). PLoS One 6, e27275 (2011).
    • (2011) PLoS One , vol.6 , pp. e27275
    • Thudi, M.1
  • 89
    • 84871643573 scopus 로고    scopus 로고
    • Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers
    • Agarwal, G. et al. Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers. PloS One 7, e52443 (2012).
    • (2012) PloS One , vol.7 , pp. e52443
    • Agarwal, G.1
  • 90
    • 84863567245 scopus 로고    scopus 로고
    • Transcriptome sequencing of wild chickpea as a rich resource for marker development
    • Jhanwar, S. et al. Transcriptome sequencing of wild chickpea as a rich resource for marker development. Plant Biotechnol. J. 10, 690-702 (2012).
    • (2012) Plant Biotechnol. J. , vol.10 , pp. 690-702
    • Jhanwar, S.1
  • 91
    • 84868698081 scopus 로고    scopus 로고
    • Genetic diversity assessment of sesame core collection in China by phenotype and molecular markers and extraction of a mini-core collection
    • Zhang, Y. et al. Genetic diversity assessment of sesame core collection in China by phenotype and molecular markers and extraction of a mini-core collection. BMC Genet 13, 102 (2012).
    • (2012) BMC Genet , vol.13 , pp. 102
    • Zhang, Y.1
  • 92
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M. & Conery, J. S. The evolutionary fate and consequences of duplicate genes. Science 290, 1151-1155 (2000).
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.