-
1
-
-
0037371971
-
Phytochemistry meets genome analysis, and beyond.........
-
DOI 10.1016/S0031-9422(02)00712-4
-
Dixon RA, Strack D (2003) Phytochemistry meets genome analysis, and beyond. Phytochemistry 62:815-816. (Pubitemid 36262385)
-
(2003)
Phytochemistry
, vol.62
, Issue.6
, pp. 815-816
-
-
Dixon, R.A.1
Strack, D.2
-
2
-
-
34248580879
-
Gas chromatography mass spectrometry-based metabolite profiling in plants
-
Lisec J, Schauer N, Kopka J, Willmitzer L, Fernie AR (2006) Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat Protoc 1:387-396.
-
(2006)
Nat Protoc
, vol.1
, pp. 387-396
-
-
Lisec, J.1
Schauer, N.2
Kopka, J.3
Willmitzer, L.4
Fernie, A.R.5
-
3
-
-
77951880802
-
Metabolomics for functional genomics, systems biology, and biotechnology
-
Saito K, Matsuda F (2010) Metabolomics for functional genomics, systems biology, and biotechnology. Annu Rev Plant Biol 61:463-489.
-
(2010)
Annu Rev Plant Biol
, vol.61
, pp. 463-489
-
-
Saito, K.1
Matsuda, F.2
-
4
-
-
34248377833
-
The metabolic signature related to high plant growth rate in Arabidopsis thaliana
-
DOI 10.1073/pnas.0609709104
-
Meyer RC, et al. (2007) The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proc Natl Acad Sci USA 104:4759-4764. (Pubitemid 47186298)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.11
, pp. 4759-4764
-
-
Meyer, R.C.1
Steinfath, M.2
Lisec, J.3
Becher, M.4
Witucka-Wall, H.5
Torjek, O.6
Fiehn, O.7
Eckardt, A.8
Willmitzer, L.9
Selbig, J.10
Altmann, T.11
-
5
-
-
67649872569
-
Starch as a major integrator in the regulation of plant growth
-
Sulpice R, et al. (2009) Starch as a major integrator in the regulation of plant growth. Proc Natl Acad Sci USA 106:10348-10353.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 10348-10353
-
-
Sulpice, R.1
-
6
-
-
58149330201
-
Metabolomics-assisted breeding: A viable option for crop improvement?
-
Fernie AR, Schauer N (2009) Metabolomics-assisted breeding: A viable option for crop improvement? Trends Genet 25:39-48.
-
(2009)
Trends Genet
, vol.25
, pp. 39-48
-
-
Fernie, A.R.1
Schauer, N.2
-
7
-
-
77956429710
-
Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach
-
Steinfath M, et al. (2010) Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach. Plant Biotechnol J 8:900-911.
-
(2010)
Plant Biotechnol J
, vol.8
, pp. 900-911
-
-
Steinfath, M.1
-
8
-
-
71849099319
-
Metabolic profiles of sunflower genotypes with contrasting response to Sclerotinia sclerotiorum infection
-
Peluffo L, et al. (2010) Metabolic profiles of sunflower genotypes with contrasting response to Sclerotinia sclerotiorum infection. Phytochemistry 71:70-80.
-
(2010)
Phytochemistry
, vol.71
, pp. 70-80
-
-
Peluffo, L.1
-
9
-
-
84856283792
-
Genomic and metabolic prediction of complex heterotic traits in hybrid maize
-
Riedelsheimer C, et al. (2012) Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet 44:217-220.
-
(2012)
Nat Genet
, vol.44
, pp. 217-220
-
-
Riedelsheimer, C.1
-
10
-
-
0842265923
-
QTL and candidate genes phytoene synthase and zeta-carotene desaturase associated with the accumulation of carotenoids in maize
-
DOI 10.1007/s00122-003-1436-4
-
Wong JC, Lambert RJ, Wurtzel ET, Rocheford TR (2004) QTL and candidate genes phytoene synthase and zeta-carotene desaturase associated with the accumulation of carotenoids in maize. Theor Appl Genet 108:349-359. (Pubitemid 38162219)
-
(2004)
Theoretical and Applied Genetics
, vol.108
, Issue.2
, pp. 349-359
-
-
Wong, J.C.1
Lambert, R.J.2
Wurtzel, E.T.3
Rocheford, T.R.4
-
11
-
-
0027951202
-
Impact of low-temperature stress on general phenylpropanoid and anthocyanin pathways: Enhancement of transcript abundance and anthocyanin pigmentation in maize seedlings
-
Christie PJ, Alfenito MR, Walbot V (1994) Impact of low-temperature stress on general phenylpropanoid and anthocyanin pathways: Enhancement of transcript abundance and anthocyanin pigmentation in maize seedlings. Planta 194:541-549. (Pubitemid 2145719)
-
(1994)
Planta
, vol.194
, Issue.4
, pp. 541-549
-
-
Christie, P.J.1
Alfenito, M.R.2
Walbot, V.3
-
12
-
-
0029786235
-
Quantitative trait loci and metabolic pathways: Genetic control of the concentration of maysin, a corn earworm resistance factor, in maize silks
-
DOI 10.1073/pnas.93.17.8820
-
Byrne PF, et al. (1996) Quantitative trait loci and metabolic pathways: Genetic control of the concentration of maysin, a corn earworm resistance factor, in maize silks. Proc Natl Acad Sci USA 93:8820-8825. (Pubitemid 26281974)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.17
, pp. 8820-8825
-
-
Byrne, P.F.1
Mcmullen, M.D.2
Snook, M.E.3
Musket, T.A.4
Theuri, J.M.5
Widstrom, N.W.6
Wiseman, B.R.7
Coe, E.H.8
-
13
-
-
40549123412
-
Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations
-
DOI 10.1111/j.1365-313X.2007.03383.x
-
Lisec J, et al. (2008) Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J 53:960-972. (Pubitemid 351359043)
-
(2008)
Plant Journal
, vol.53
, Issue.6
, pp. 960-972
-
-
Lisec, J.1
Meyer, R.C.2
Steinfath, M.3
Redestig, H.4
Becher, M.5
Witucka-Wall, H.6
Fiehn, O.7
Torjek, O.8
Selbig, J.9
Altmann, T.10
Willmitzer, L.11
-
14
-
-
79958773248
-
Identification of enzymatic and regulatory genes of plant metabolism through QTL analysis in Arabidopsis
-
Brotman Y, et al. (2011) Identification of enzymatic and regulatory genes of plant metabolism through QTL analysis in Arabidopsis. J Plant Physiol 168:1387-1394.
-
(2011)
J Plant Physiol
, vol.168
, pp. 1387-1394
-
-
Brotman, Y.1
-
15
-
-
54949113665
-
Molecular markers and selection for complex traits in plants: Learning from the last 20 years
-
Bernardo R (2008) Molecular markers and selection for complex traits in plants: Learning from the last 20 years. Crop Sci 48:1649-1664.
-
(2008)
Crop Sci
, vol.48
, pp. 1649-1664
-
-
Bernardo, R.1
-
17
-
-
62349101060
-
Genetical metabolomics: Closing in on phenotypes
-
Keurentjes JJB (2009) Genetical metabolomics: Closing in on phenotypes. Curr Opin Plant Biol 12:223-230.
-
(2009)
Curr Opin Plant Biol
, vol.12
, pp. 223-230
-
-
Keurentjes, J.J.B.1
-
18
-
-
0035350685
-
Mapping quantitative trait loci in plants: Uses and caveats for evolutionary biology
-
Mauricio R (2001) Mapping quantitative trait loci in plants: Uses and caveats for evolutionary biology. Nat Rev Genet 2:370-381.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 370-381
-
-
Mauricio, R.1
-
19
-
-
79952445645
-
An introduction to association mapping in plants
-
Stich B, Melchinger A (2010) An introduction to association mapping in plants. CAB Reviews 5:1-9.
-
(2010)
CAB Reviews
, vol.5
, pp. 1-9
-
-
Stich, B.1
Melchinger, A.2
-
20
-
-
77955166399
-
Population structure and cryptic relatedness in genetic association studies
-
Astle W, Balding DJ (2009) Population structure and cryptic relatedness in genetic association studies. Stat Sci 24:451-471.
-
(2009)
Stat Sci
, vol.24
, pp. 451-471
-
-
Astle, W.1
Balding, D.J.2
-
21
-
-
79953045460
-
Overview of techniques to account for confounding due to population stratification and cryptic relatedness in genomic data association analyses
-
Sillanpää MJ (2011) Overview of techniques to account for confounding due to population stratification and cryptic relatedness in genomic data association analyses. Heredity (Edinb) 106:511-519.
-
(2011)
Heredity (Edinb)
, vol.106
, pp. 511-519
-
-
Sillanpää, M.J.1
-
22
-
-
77953233453
-
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
-
Atwell S, et al. (2010) Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465:627-631.
-
(2010)
Nature
, vol.465
, pp. 627-631
-
-
Atwell, S.1
-
23
-
-
62549153338
-
Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis
-
Stich B, Melchinger AE (2009) Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis. BMC Genomics 10:94.
-
(2009)
BMC Genomics
, vol.10
, pp. 94
-
-
Stich, B.1
Melchinger, A.E.2
-
24
-
-
35048838105
-
Genomewide rapid association using mixed model and regression: A fast and simple method for genomewide pedigree-based quantitative trait loci association analysis
-
DOI 10.1534/genetics.107.075614
-
Aulchenko YS, de Koning DJ, Haley C (2007) Genomewide rapid association using mixed model and regression: A fast and simple method for genomewide pedigree-based quantitative trait loci association analysis. Genetics 177:577-585. (Pubitemid 47555872)
-
(2007)
Genetics
, vol.177
, Issue.1
, pp. 577-585
-
-
Aulchenko, Y.S.1
De Koning, D.-J.2
Haley, C.3
-
25
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc, B 57:289-300.
-
(1995)
J R Stat Soc, B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
27
-
-
77953808087
-
Genotype imputation for genome-wide association studies
-
Marchini J, Howie B (2010) Genotype imputation for genome-wide association studies. Nat Rev Genet 11:499-511.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 499-511
-
-
Marchini, J.1
Howie, B.2
-
28
-
-
70450204614
-
A first-generation haplotype map of maize
-
Gore MA, et al. (2009) A first-generation haplotype map of maize. Science 326:1115-1117.
-
(2009)
Science
, vol.326
, pp. 1115-1117
-
-
Gore, M.A.1
-
29
-
-
48249152281
-
Mode of inheritance of primary metabolic traits in tomato
-
DOI 10.1105/tpc.107.056523
-
Schauer N, et al. (2008) Mode of inheritance of primary metabolic traits in tomato. Plant Cell 20:509-523. (Pubitemid 352843989)
-
(2008)
Plant Cell
, vol.20
, Issue.3
, pp. 509-523
-
-
Schauer, N.1
Semel, Y.2
Balbo, I.3
Steinfath, M.4
Repsilber, D.5
Selbig, J.6
Pleban, T.7
Zamir, D.8
Fernie, A.R.9
-
30
-
-
33745580270
-
The genetics of plant metabolism
-
DOI 10.1038/ng1815, PII N1815
-
Keurentjes JJB, et al. (2006) The genetics of plant metabolism. Nat Genet 38:842-849. (Pubitemid 43980608)
-
(2006)
Nature Genetics
, vol.38
, Issue.7
, pp. 842-849
-
-
Keurentjes, J.J.B.1
Fu, J.2
De Vos, C.H.R.3
Lommen, A.4
Hall, R.D.5
Bino, R.J.6
Van Der, P.L.H.W.7
Jansen, R.C.8
Vreugdenhil, D.9
Koornneef, M.10
-
31
-
-
34548016343
-
Recombination and linkage disequilibrium in Arabidopsis thaliana
-
DOI 10.1038/ng2115, PII NG2115
-
Kim S, et al. (2007) Recombination and linkage disequilibrium in Arabidopsis thaliana. Nat Genet 39:1151-1155. (Pubitemid 47340659)
-
(2007)
Nature Genetics
, vol.39
, Issue.9
, pp. 1151-1155
-
-
Kim, S.1
Plagnol, V.2
Hu, T.T.3
Toomajian, C.4
Clark, R.M.5
Ossowski, S.6
Ecker, J.R.7
Weigel, D.8
Nordborg, M.9
-
32
-
-
78349288489
-
Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping
-
Chan EK, Rowe HC, Kliebenstein DJ (2010) Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping. Genetics 185:991-1007.
-
(2010)
Genetics
, vol.185
, pp. 991-1007
-
-
Chan, E.K.1
Rowe, H.C.2
Kliebenstein, D.J.3
-
33
-
-
75749134031
-
A genome-wide perspective of genetic variation in human metabolism
-
Illig T, et al. (2010) A genome-wide perspective of genetic variation in human metabolism. Nat Genet 42:137-141.
-
(2010)
Nat Genet
, vol.42
, pp. 137-141
-
-
Illig, T.1
-
34
-
-
79957604338
-
A genome-wide association study of metabolic traits in human urine
-
Suhre K, et al. (2011) A genome-wide association study of metabolic traits in human urine. Nat Genet 43:565-569.
-
(2011)
Nat Genet
, vol.43
, pp. 565-569
-
-
Suhre, K.1
-
35
-
-
59149100506
-
System-wide molecular evidence for phenotypic buffering in Arabidopsis
-
Fu J, et al. (2009) System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nat Genet 41:166-167.
-
(2009)
Nat Genet
, vol.41
, pp. 166-167
-
-
Fu, J.1
-
36
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
Elshire RJ, et al. (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 6:e19379.
-
(2011)
PLoS ONE
, vol.6
-
-
Elshire, R.J.1
-
37
-
-
78149439015
-
The genetics of lignin biosynthesis: Connecting genotype to phenotype
-
Bonawitz ND, Chapple C (2010) The genetics of lignin biosynthesis: Connecting genotype to phenotype. Annu Rev Genet 44:337-363.
-
(2010)
Annu Rev Genet
, vol.44
, pp. 337-363
-
-
Bonawitz, N.D.1
Chapple, C.2
-
39
-
-
79953212272
-
Cellulose synthases and synthesis in Arabidopsis
-
Endler A, Persson S (2011) Cellulose synthases and synthesis in Arabidopsis. Mol Plant 4:199-211.
-
(2011)
Mol Plant
, vol.4
, pp. 199-211
-
-
Endler, A.1
Persson, S.2
-
40
-
-
33846375045
-
Catecholamines are active compounds in plants
-
DOI 10.1016/j.plantsci.2006.10.013, PII S0168945206003025
-
Kulma A, Szopa J (2007) Catecholamines are active compounds in plants. Plant Sci 172: 433-440. (Pubitemid 46127715)
-
(2007)
Plant Science
, vol.172
, Issue.3
, pp. 433-440
-
-
Kulma, A.1
Szopa, J.2
-
41
-
-
34447319626
-
Lignin modification improves fermentable sugar yields for biofuel production
-
DOI 10.1038/nbt1316, PII NBT1316
-
Chen F, Dixon RA (2007) Lignin modification improves fermentable sugar yields for biofuel production. Nat Biotechnol 25:759-761. (Pubitemid 47052188)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.7
, pp. 759-761
-
-
Chen, F.1
Dixon, R.A.2
-
42
-
-
77955898246
-
Advances in modifying lignin for enhanced biofuel production
-
Simmons BA, Loqué D, Ralph J (2010) Advances in modifying lignin for enhanced biofuel production. Curr Opin Plant Biol 13:313-320.
-
(2010)
Curr Opin Plant Biol
, vol.13
, pp. 313-320
-
-
Simmons, B.A.1
Loqué, D.2
Ralph, J.3
-
43
-
-
77954257815
-
Lignin biosynthesis and structure
-
Vanholme R, Demedts B, Morreel K, Ralph J, BoerjanW(2010) Lignin biosynthesis and structure. Plant Physiol 153:895-905.
-
(2010)
Plant Physiol
, vol.153
, pp. 895-905
-
-
Vanholme, R.1
Demedts, B.2
Morreel, K.3
Ralph, J.4
Boerjan, W.5
-
44
-
-
37849044667
-
Downregulation of cinnamoyl-coenzyme A reductase in poplar: Multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure
-
Leplé JC, et al. (2007) Downregulation of cinnamoyl-coenzyme A reductase in poplar: Multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure. Plant Cell 19:3669-3691.
-
(2007)
Plant Cell
, vol.19
, pp. 3669-3691
-
-
Leplé, J.C.1
-
45
-
-
0035170102
-
Strong decrease in lignin content without significant alteration of plant development is induced by simultaneous down-regulation of cinnamoyl CoA reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD) in tobacco plants
-
DOI 10.1046/j.1365-313X.2001.01140.x
-
Chabannes M, et al. (2001) Strong decrease in lignin content without significant alteration of plant development is induced by simultaneous down-regulation of cinnamoyl CoA reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD) in tobacco plants. Plant J 28:257-270. (Pubitemid 33066391)
-
(2001)
Plant Journal
, vol.28
, Issue.3
, pp. 257-270
-
-
Chabannes, M.1
Barakate, A.2
Lapierre, C.3
Marita, J.M.4
Ralph, J.5
Pean, M.6
Danoun, S.7
Halpin, C.8
Grima-Pettenati, J.9
Boudet, A.M.10
-
46
-
-
42249110184
-
Emerging strategies of lignin engineering and degradation for cellulosic biofuel production
-
Weng JK, Li X, Bonawitz ND, Chapple C (2008) Emerging strategies of lignin engineering and degradation for cellulosic biofuel production. Curr Opin Biotechnol 19:166-172.
-
(2008)
Curr Opin Biotechnol
, vol.19
, pp. 166-172
-
-
Weng, J.K.1
Li, X.2
Bonawitz, N.D.3
Chapple, C.4
-
47
-
-
17144423651
-
Metabolic flux analysis of the phenylpropanoid pathway in elicitor-treated potato tuber tissue
-
Matsuda F, et al. (2005) Metabolic flux analysis of the phenylpropanoid pathway in elicitor-treated potato tuber tissue. Plant Cell Physiol 46:454-466.
-
(2005)
Plant Cell Physiol
, vol.46
, pp. 454-466
-
-
Matsuda, F.1
-
48
-
-
84856050559
-
Determination of methane fermentation yield and its kinetics by near infrared spectroscopy and chemical composition in maize
-
Grieder C, et al. (2011) Determination of methane fermentation yield and its kinetics by near infrared spectroscopy and chemical composition in maize. JNIRS 19:463-477.
-
(2011)
JNIRS
, vol.19
, pp. 463-477
-
-
Grieder, C.1
-
49
-
-
75149136156
-
TargetSearch-a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data
-
Cuadros-Inostroza A, et al. (2009) TargetSearch-a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics 10:428.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 428
-
-
Cuadros-Inostroza, A.1
-
50
-
-
68149103139
-
Data transformation in statistical analysis of field trials with changing treatment variance
-
Piepho H (2009) Data transformation in statistical analysis of field trials with changing treatment variance. Agron J 101:865-869.
-
(2009)
Agron J
, vol.101
, pp. 865-869
-
-
Piepho, H.1
-
51
-
-
34447324105
-
GenABEL: An R library for genome-wide association analysis
-
DOI 10.1093/bioinformatics/btm108
-
Aulchenko YS, Ripke S, Isaacs A, van Duijn CM (2007) GenABEL: An R library for genome- wide association analysis. Bioinformatics 23:1294-1296. (Pubitemid 47050548)
-
(2007)
Bioinformatics
, vol.23
, Issue.10
, pp. 1294-1296
-
-
Aulchenko, Y.S.1
Ripke, S.2
Isaacs, A.3
Van Duijn, C.M.4
-
52
-
-
31744440502
-
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
-
DOI 10.1038/ng1702, PII NG1702
-
Yu J, et al. (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38:203-208. (Pubitemid 43177234)
-
(2006)
Nature Genetics
, vol.38
, Issue.2
, pp. 203-208
-
-
Yu, J.1
Pressoir, G.2
Briggs, W.H.3
Bi, I.V.4
Yamasaki, M.5
Doebley, J.F.6
McMullen, M.D.7
Gaut, B.S.8
Nielsen, D.M.9
Holland, J.B.10
Kresovich, S.11
Buckler, E.S.12
-
53
-
-
34547628858
-
Family-based association tests for genomewide association scans
-
Chen WM, Abecasis GR (2007) Family-based association tests for genomewide association scans. Am J Hum Genet 81:913-926.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 913-926
-
-
Chen, W.M.1
Abecasis, G.R.2
-
54
-
-
77957001515
-
Variation explained in mixed-model association mapping
-
Sun G, et al. (2010) Variation explained in mixed-model association mapping. Heredity (Edinb) 105:333-340.
-
(2010)
Heredity (Edinb)
, vol.105
, pp. 333-340
-
-
Sun, G.1
-
55
-
-
62649155943
-
A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals
-
Browning BL, Browning SR (2009) A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet 84:210-223.
-
(2009)
Am J Hum Genet
, vol.84
, pp. 210-223
-
-
Browning, B.L.1
Browning, S.R.2
|