메뉴 건너뛰기




Volumn 99, Issue 15, 2015, Pages 6391-6403

Transcriptome analysis of acetic-acid-treated yeast cells identifies a large set of genes whose overexpression or deletion enhances acetic acid tolerance

Author keywords

Acetic acid; Deletion mutant; Overexpression; Stress tolerance; Transcriptome profile

Indexed keywords

ACETIC ACID; BENZOIC ACID; BIOSYNTHESIS; GENES; PH; PROTEINS; SORBIC ACID; YEAST;

EID: 84937637609     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-015-6706-y     Document Type: Article
Times cited : (34)

References (37)
  • 1
    • 34547868108 scopus 로고    scopus 로고
    • Generic and specific transcriptional responses to different weak organic acids in anaerobic chemostat cultures of Saccharomyces cerevisiae
    • COI: 1:CAS:528:DC%2BD2sXhtVWntbjK, PID: 17484738
    • Abbott DA, Knijnenburg TA, de Poorter LM, Reinders MJ, Pronk JT, Van Maris AJ (2007) Generic and specific transcriptional responses to different weak organic acids in anaerobic chemostat cultures of Saccharomyces cerevisiae. FEMS Yeast Res 7:819–833
    • (2007) FEMS Yeast Res , vol.7 , pp. 819-833
    • Abbott, D.A.1    Knijnenburg, T.A.2    de Poorter, L.M.3    Reinders, M.J.4    Pronk, J.T.5    Van Maris, A.J.6
  • 2
    • 60549114895 scopus 로고    scopus 로고
    • Yeast protein expression profile during acetic acid-induced apoptosis indicates causal involvement of the TOR pathway
    • COI: 1:CAS:528:DC%2BD1MXjt1Wht7w%3D, PID: 19137548
    • Almeida B, Ohlmeier S, Almeida AJ, Madeo F, Leao C, Rodrigues F, Ludovico P (2009) Yeast protein expression profile during acetic acid-induced apoptosis indicates causal involvement of the TOR pathway. Proteomics 9:720–732
    • (2009) Proteomics , vol.9 , pp. 720-732
    • Almeida, B.1    Ohlmeier, S.2    Almeida, A.J.3    Madeo, F.4    Leao, C.5    Rodrigues, F.6    Ludovico, P.7
  • 3
    • 84878315786 scopus 로고    scopus 로고
    • Transcriptional profiling of Saccharomyces cerevisiae T2 cells upon exposure to hardwood spent sulphite liquor: comparison to acetic acid, furfural and hydroxymethylfurfural
    • COI: 1:CAS:528:DC%2BC3sXnvFymt7c%3D, PID: 23539198
    • Bajwa PK, Ho CY, Chan CK, Martin VJ, Trevors JT, Lee H (2013) Transcriptional profiling of Saccharomyces cerevisiae T2 cells upon exposure to hardwood spent sulphite liquor: comparison to acetic acid, furfural and hydroxymethylfurfural. Antonie Van Leeuwenhoek 103:1281–1295
    • (2013) Antonie Van Leeuwenhoek , vol.103 , pp. 1281-1295
    • Bajwa, P.K.1    Ho, C.Y.2    Chan, C.K.3    Martin, V.J.4    Trevors, J.T.5    Lee, H.6
  • 4
    • 4644299555 scopus 로고    scopus 로고
    • Translational profiling: the genome-wide measure of the nascent proteome
    • COI: 1:CAS:528:DC%2BD2cXosVWjtrs%3D, PID: 15355593
    • Beilharz TH, Preiss T (2004) Translational profiling: the genome-wide measure of the nascent proteome. Brief Funct Genomic Proteomic 3:103–111
    • (2004) Brief Funct Genomic Proteomic , vol.3 , pp. 103-111
    • Beilharz, T.H.1    Preiss, T.2
  • 5
    • 0029826050 scopus 로고    scopus 로고
    • +-ATPase and expression of PMA1 and PMA2 genes in Saccharomyces cerevisiae cells grown at optimal and low pH
    • COI: 1:CAS:528:DyaK2sXht1KqtLk%3D, PID: 8929277
    • +-ATPase and expression of PMA1 and PMA2 genes in Saccharomyces cerevisiae cells grown at optimal and low pH. Arch Microbiol 166:315–320
    • (1996) Arch Microbiol , vol.166 , pp. 315-320
    • Carmelo, V.1    Bogaerts, P.2    Sá-Correia, I.3
  • 6
    • 0031551022 scopus 로고    scopus 로고
    • Effect of extracellular acidification on the activity of plasma membrane ATPase and on the cytosolic and vacuolar pH of Saccharomyces cerevisiae
    • COI: 1:CAS:528:DyaK2sXhslOms78%3D, PID: 9106483
    • Carmelo V, Santos H, Sá-Correia I (1997) Effect of extracellular acidification on the activity of plasma membrane ATPase and on the cytosolic and vacuolar pH of Saccharomyces cerevisiae. Biochim Biophys Acta 1325:63–70
    • (1997) Biochim Biophys Acta , vol.1325 , pp. 63-70
    • Carmelo, V.1    Santos, H.2    Sá-Correia, I.3
  • 8
    • 25844432253 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae adaptation to weak acids involves the transcription factor Haa1p and Haa1p-regulated genes
    • COI: 1:CAS:528:DC%2BD2MXhtVKis7vO, PID: 16176797
    • Fernandes AR, Mira NP, Vargas RC, Canelhas I, Sá-Correia I (2005) Saccharomyces cerevisiae adaptation to weak acids involves the transcription factor Haa1p and Haa1p-regulated genes. Biochem Biophys Res Commun 337:95–103
    • (2005) Biochem Biophys Res Commun , vol.337 , pp. 95-103
    • Fernandes, A.R.1    Mira, N.P.2    Vargas, R.C.3    Canelhas, I.4    Sá-Correia, I.5
  • 11
    • 40449138572 scopus 로고    scopus 로고
    • Post-transcriptional gene regulation: from genome-wide studies to principles
    • COI: 1:CAS:528:DC%2BD1cXjsFOrs78%3D, PID: 18043867
    • Halbeisen RE, Galgano A, Scherrer T, Gerber AP (2008) Post-transcriptional gene regulation: from genome-wide studies to principles. Cell Mol Life Sci 65:798–813
    • (2008) Cell Mol Life Sci , vol.65 , pp. 798-813
    • Halbeisen, R.E.1    Galgano, A.2    Scherrer, T.3    Gerber, A.P.4
  • 12
    • 0029808313 scopus 로고    scopus 로고
    • +-ATPase and optimal glycolytic flux are required for rapid adaptation and growth of Saccharomyces cerevisiae in the presence of the weak-acid preservative sorbic acid
    • COI: 1:CAS:528:DyaK28XlsFertLg%3D, PID: 8795204
    • +-ATPase and optimal glycolytic flux are required for rapid adaptation and growth of Saccharomyces cerevisiae in the presence of the weak-acid preservative sorbic acid. Appl Environ Microbiol 62:3158–3164
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3158-3164
    • Holyoak, C.D.1    Stratford, M.2    McMullin, Z.3    Cole, M.B.4    Crimmins, K.5    Brown, A.J.6
  • 13
    • 33747337558 scopus 로고    scopus 로고
    • Yeast genes involved in response to lactic acid and acetic acid: acidic conditions caused by the organic acids in Saccharomyces cerevisiae cultures induce expression of intracellular metal metabolism genes regulated by Aft1p
    • COI: 1:CAS:528:DC%2BD28XhtVCjt7nJ, PID: 16911514
    • Kawahata M, Masaki K, Fujii T, Iefuji H (2006) Yeast genes involved in response to lactic acid and acetic acid: acidic conditions caused by the organic acids in Saccharomyces cerevisiae cultures induce expression of intracellular metal metabolism genes regulated by Aft1p. FEMS Yeast Res 6:924–936
    • (2006) FEMS Yeast Res , vol.6 , pp. 924-936
    • Kawahata, M.1    Masaki, K.2    Fujii, T.3    Iefuji, H.4
  • 14
    • 84883553942 scopus 로고    scopus 로고
    • Mutations of the TATA-binding protein confer enhanced tolerance to hyperosmotic stress in Saccharomyces cerevisiae
    • Kim NR, Yang J, Kwon H, An J, Choi W, Kim W (2013) Mutations of the TATA-binding protein confer enhanced tolerance to hyperosmotic stress in Saccharomyces cerevisiae. Appl Microbiol Biotechnol 97:3227–3228
    • (2013) Appl Microbiol Biotechnol , vol.97 , pp. 3227-3228
    • Kim, N.R.1    Yang, J.2    Kwon, H.3    An, J.4    Choi, W.5    Kim, W.6
  • 15
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • COI: 1:CAS:528:DC%2BC38Xjt1Oqt7c%3D, PID: 22388286
    • Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357–359
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 16
    • 77952876202 scopus 로고    scopus 로고
    • Transcriptome shifts in response to furfural and acetic acid in Saccharomyces cerevisiae
    • COI: 1:CAS:528:DC%2BC3cXltVymu7g%3D, PID: 20309542
    • Li BZ, Yuan YJ (2010) Transcriptome shifts in response to furfural and acetic acid in Saccharomyces cerevisiae. Appl Microbiol Biotechnol 86:1915–1924
    • (2010) Appl Microbiol Biotechnol , vol.86 , pp. 1915-1924
    • Li, B.Z.1    Yuan, Y.J.2
  • 17
    • 84901741434 scopus 로고    scopus 로고
    • Hydrogen peroxide sensing, signaling and regulation of transcription factors
    • COI: 1:CAS:528:DC%2BC2cXht1KqtL3M, PID: 24634836
    • Marinho HS, Real C, Cyrne L, Soares H, Antunes F (2014) Hydrogen peroxide sensing, signaling and regulation of transcription factors. Redox Biol 2:535–562
    • (2014) Redox Biol , vol.2 , pp. 535-562
    • Marinho, H.S.1    Real, C.2    Cyrne, L.3    Soares, H.4    Antunes, F.5
  • 18
    • 77958169154 scopus 로고    scopus 로고
    • Genomic expression program involving the Haa1p-regulon in Saccharomyces cerevisiae response to acetic acid
    • Mira NP, Becker JD, Sá-Correia I (2010a) Genomic expression program involving the Haa1p-regulon in Saccharomyces cerevisiae response to acetic acid. OMICS 5:587–601
    • (2010) OMICS , vol.5 , pp. 587-601
    • Mira, N.P.1    Becker, J.D.2    Sá-Correia, I.3
  • 19
    • 77958135565 scopus 로고    scopus 로고
    • Genome-wide identification of Saccharomyces cerevisiae genes required for tolerance to acetic acid
    • PID: 20973990
    • Mira NP, Palma M, Guerreiro JF, Sá-Correia I (2010b) Genome-wide identification of Saccharomyces cerevisiae genes required for tolerance to acetic acid. Microb Cell Fact 9:79
    • (2010) Microb Cell Fact , vol.9 , pp. 79
    • Mira, N.P.1    Palma, M.2    Guerreiro, J.F.3    Sá-Correia, I.4
  • 20
    • 77958162502 scopus 로고    scopus 로고
    • Adaptive response and tolerance to weak acids in Saccharomyces cerevisiae: a genome-wide view
    • COI: 1:CAS:528:DC%2BC3cXhtlyqur7L, PID: 20955006
    • Mira NP, Teixeira MC, Sá-Correia I (2010c) Adaptive response and tolerance to weak acids in Saccharomyces cerevisiae: a genome-wide view. OMICS 14:525–540
    • (2010) OMICS , vol.14 , pp. 525-540
    • Mira, N.P.1    Teixeira, M.C.2    Sá-Correia, I.3
  • 21
    • 34548775911 scopus 로고    scopus 로고
    • Hog1 mitogen-activated protein kinase phosphorylation targets the yeast Fps1 aquaglyceroporin for endocytosis, thereby rendering cells resistant to acetic acid
    • COI: 1:CAS:528:DC%2BD2sXhtVKls7nO, PID: 17620418
    • Mollapour M, Piper PW (2007) Hog1 mitogen-activated protein kinase phosphorylation targets the yeast Fps1 aquaglyceroporin for endocytosis, thereby rendering cells resistant to acetic acid. Mol Cell Biol 27:6446–6456
    • (2007) Mol Cell Biol , vol.27 , pp. 6446-6456
    • Mollapour, M.1    Piper, P.W.2
  • 22
    • 41549121934 scopus 로고    scopus 로고
    • Novel stress responses facilitate Saccharomyces cerevisiae growth in the presence of the monocarboxylate preservatives
    • COI: 1:CAS:528:DC%2BD1cXkt1ajtbY%3D, PID: 18240334
    • Mollapour M, Shepherd A, Piper PW (2008) Novel stress responses facilitate Saccharomyces cerevisiae growth in the presence of the monocarboxylate preservatives. Yeast 25:169–177
    • (2008) Yeast , vol.25 , pp. 169-177
    • Mollapour, M.1    Shepherd, A.2    Piper, P.W.3
  • 23
    • 70349866687 scopus 로고    scopus 로고
    • ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
    • COI: 1:CAS:528:DC%2BD1MXhtFyhur7I, PID: 19654119
    • Morgan M, Anders S, Lawrence M, Aboyoun P, Pages H, Gentleman R (2009) ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics 25:2607–2608
    • (2009) Bioinformatics , vol.25 , pp. 2607-2608
    • Morgan, M.1    Anders, S.2    Lawrence, M.3    Aboyoun, P.4    Pages, H.5    Gentleman, R.6
  • 24
    • 0033458078 scopus 로고    scopus 로고
    • Yeast superoxide dismutase mutants reveal a prooxidant action of weak organic acid food preservatives
    • COI: 1:CAS:528:DC%2BD3cXot1Oq, PID: 10641714
    • Piper PW (1999) Yeast superoxide dismutase mutants reveal a prooxidant action of weak organic acid food preservatives. Free Radic Biol Med 27:1219–1227
    • (1999) Free Radic Biol Med , vol.27 , pp. 1219-1227
    • Piper, P.W.1
  • 25
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a bioconductor package for differential expression analysis of digital gene expression data
    • COI: 1:CAS:528:DC%2BD1MXhs1WlurvO, PID: 19910308
    • Robinson MD, McCarthy DJ, Smyth GK (2010) edgeR: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26:139–140
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 27
    • 0029048826 scopus 로고
    • Mechanisms of membrane toxicity of hydrocarbons
    • COI: 1:CAS:528:DyaK2MXms1SntLw%3D, PID: 7603409
    • Sikkema J, de Bont JA, Poolman B (1995) Mechanisms of membrane toxicity of hydrocarbons. Microbiol Rev 59:201–222
    • (1995) Microbiol Rev , vol.59 , pp. 201-222
    • Sikkema, J.1    de Bont, J.A.2    Poolman, B.3
  • 29
    • 33751006150 scopus 로고    scopus 로고
    • The SPI1 gene, encoding a glycosylphosphatidylinositol (GPI)-anchored cell wall protein, plays a prominent role in the development of yeast resistance to lipophilic weak acids food preservatives
    • PID: 16980434
    • Simões T, Mira NP, Fernandes AR, Sá-Correia I (2006) The SPI1 gene, encoding a glycosylphosphatidylinositol (GPI)-anchored cell wall protein, plays a prominent role in the development of yeast resistance to lipophilic weak acids food preservatives. Appl Environ Microbiol 72:7168–7175
    • (2006) Appl Environ Microbiol , vol.72 , pp. 7168-7175
    • Simões, T.1    Mira, N.P.2    Fernandes, A.R.3    Sá-Correia, I.4
  • 30
    • 84864393542 scopus 로고    scopus 로고
    • Adaptation to stress in yeast: to translate or not?
    • COI: 1:CAS:528:DC%2BC38XhtVOjt7zM, PID: 22817736
    • Simpson CE, Ashe MP (2012) Adaptation to stress in yeast: to translate or not? Biochem Soc Trans 40:794–799
    • (2012) Biochem Soc Trans , vol.40 , pp. 794-799
    • Simpson, C.E.1    Ashe, M.P.2
  • 31
    • 0027473548 scopus 로고
    • Effects of ethanol, octanoic and decanoic acids on fermentation and the passive influx of protons through the plasma membrane of Saccharomyces cerevisiae
    • COI: 1:CAS:528:DyaK3sXitFWnsLw%3D
    • Stevens S, Hofmeyr J-HS (1993) Effects of ethanol, octanoic and decanoic acids on fermentation and the passive influx of protons through the plasma membrane of Saccharomyces cerevisiae. Appl Microbiol Biotechnol 38:656–663
    • (1993) Appl Microbiol Biotechnol , vol.38 , pp. 656-663
    • Stevens, S.1    Hofmeyr, J.-H.S.2
  • 34
    • 84868611282 scopus 로고    scopus 로고
    • Enhancement of acetic acid tolerance in Saccharomyces cerevisiae by overexpression of the HAA1 gene, encoding a transcriptional activator
    • COI: 1:CAS:528:DC%2BC38Xhs1eisr3P, PID: 22961896
    • Tanaka K, Ishii Y, Ogawa J, Shima J (2012) Enhancement of acetic acid tolerance in Saccharomyces cerevisiae by overexpression of the HAA1 gene, encoding a transcriptional activator. Appl Environ Microbiol 78:8161–8163
    • (2012) Appl Environ Microbiol , vol.78 , pp. 8161-8163
    • Tanaka, K.1    Ishii, Y.2    Ogawa, J.3    Shima, J.4
  • 35
    • 18844392542 scopus 로고    scopus 로고
    • A proteome analysis of the yeast response to the herbicide 2,4-dichlorophenoxyacetic acid
    • COI: 1:CAS:528:DC%2BD2MXkslejs7Y%3D, PID: 15832368
    • Teixeira MC, Santos PM, Fernandes AR, Sá-Correia I (2005) A proteome analysis of the yeast response to the herbicide 2,4-dichlorophenoxyacetic acid. Proteomics 5:1889–1901
    • (2005) Proteomics , vol.5 , pp. 1889-1901
    • Teixeira, M.C.1    Santos, P.M.2    Fernandes, A.R.3    Sá-Correia, I.4
  • 36
    • 79959248684 scopus 로고    scopus 로고
    • Construction of Saccharomyces cerevisiae strains with enhanced ethanol tolerance by mutagenesis of the TATA-binding protein gene and identification of novel genes associated with ethanol tolerance
    • COI: 1:CAS:528:DC%2BC3MXnsFKmsrk%3D, PID: 21437883
    • Yang J, Bae JY, Lee YM, Kwon H, Moon H, Kang HA, Yee S, Kim W, Choi W (2011) Construction of Saccharomyces cerevisiae strains with enhanced ethanol tolerance by mutagenesis of the TATA-binding protein gene and identification of novel genes associated with ethanol tolerance. Biotechnol Bioeng 108:1776–1787
    • (2011) Biotechnol Bioeng , vol.108 , pp. 1776-1787
    • Yang, J.1    Bae, J.Y.2    Lee, Y.M.3    Kwon, H.4    Moon, H.5    Kang, H.A.6    Yee, S.7    Kim, W.8    Choi, W.9
  • 37
    • 79955718565 scopus 로고    scopus 로고
    • Drug resistance marker-aided genome shuffling to improve acetic acid tolerance in Saccharomyces cerevisiae
    • COI: 1:CAS:528:DC%2BC3MXitFGgsLk%3D, PID: 20652356
    • Zheng DQ, Wu XC, Wang PM, Chi XQ, Tao XL, Li P (2011) Drug resistance marker-aided genome shuffling to improve acetic acid tolerance in Saccharomyces cerevisiae. J Ind Microbiol Biotechnol 38:415–422
    • (2011) J Ind Microbiol Biotechnol , vol.38 , pp. 415-422
    • Zheng, D.Q.1    Wu, X.C.2    Wang, P.M.3    Chi, X.Q.4    Tao, X.L.5    Li, P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.