-
2
-
-
0031297461
-
Specific versus non-specific contacts in protein crystals
-
Janin J. Specific versus non-specific contacts in protein crystals. Nat Struct Biol 1997;4:973-974.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 973-974
-
-
Janin, J.1
-
3
-
-
1042275583
-
A dissection of specific and non-specific protein-protein interfaces
-
Bahadur RP, Chakrabarti P, Rodier F, Janin J. A dissection of specific and non-specific protein-protein interfaces. J Mol Biol 2004;336:943-955.
-
(2004)
J Mol Biol
, vol.336
, pp. 943-955
-
-
Bahadur, R.P.1
Chakrabarti, P.2
Rodier, F.3
Janin, J.4
-
4
-
-
84893140063
-
TROSY NMR spectroscopy of large soluble proteins
-
Xu Y, Matthews S. TROSY NMR spectroscopy of large soluble proteins. Top Curr Chem 2011;335:97-119.
-
(2011)
Top Curr Chem
, vol.335
, pp. 97-119
-
-
Xu, Y.1
Matthews, S.2
-
5
-
-
84895808074
-
Gene regulation by substoichiometric heterocomplex formation of undecameric TRAP and trimeric anti-TRAP
-
Ihms EC, Zhou MW, Zhang Y, Kleckner IR, McElroy CA, Wysocki VH, Gollnick P, Foster MP. Gene regulation by substoichiometric heterocomplex formation of undecameric TRAP and trimeric anti-TRAP. Proc Natl Acad Sci USA 2014;111:3442-3447.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 3442-3447
-
-
Ihms, E.C.1
Zhou, M.W.2
Zhang, Y.3
Kleckner, I.R.4
McElroy, C.A.5
Wysocki, V.H.6
Gollnick, P.7
Foster, M.P.8
-
6
-
-
0034070741
-
The NMR structure of the 38 kDa U1A protein - PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein
-
Varani L, Gunderson SI, Mattaj IW, Kay LE, Neuhaus D, Varani G. The NMR structure of the 38 kDa U1A protein - PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein. Nat Struct Biol 2000;7:329-335.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 329-335
-
-
Varani, L.1
Gunderson, S.I.2
Mattaj, I.W.3
Kay, L.E.4
Neuhaus, D.5
Varani, G.6
-
7
-
-
39749193522
-
Asymmetric methyl group labeling as a probe of membrane protein homo-oligomers by NMR spectroscopy
-
Traaseth NJ, Verardi R, Veglia G. Asymmetric methyl group labeling as a probe of membrane protein homo-oligomers by NMR spectroscopy. J Am Chem Soc 2008;130:2400-2401.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 2400-2401
-
-
Traaseth, N.J.1
Verardi, R.2
Veglia, G.3
-
8
-
-
0034733394
-
Global folds of proteins with low densities of NOEs using residual dipolar couplings: application to the 370-residue maltodextrin-binding protein
-
Mueller GA, Choy WY, Yang D, Forman-Kay JD, Venters RA, Kay LE. Global folds of proteins with low densities of NOEs using residual dipolar couplings: application to the 370-residue maltodextrin-binding protein. J Mol Biol 2000;300:197-212.
-
(2000)
J Mol Biol
, vol.300
, pp. 197-212
-
-
Mueller, G.A.1
Choy, W.Y.2
Yang, D.3
Forman-Kay, J.D.4
Venters, R.A.5
Kay, L.E.6
-
9
-
-
77951685863
-
Direct use of N-15 relaxation rates as experimental restraints on molecular shape and orientation for docking of protein-protein complexes
-
Ryabov Y, Clore GM, Schwieters CD. Direct use of N-15 relaxation rates as experimental restraints on molecular shape and orientation for docking of protein-protein complexes. J Am Chem Soc 2010;132:5987-5989.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 5987-5989
-
-
Ryabov, Y.1
Clore, G.M.2
Schwieters, C.D.3
-
10
-
-
84877278835
-
On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys
-
Karaca E, Bonvin AMJJ. On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys. Acta Crystallogr D 2013;69:683-694.
-
(2013)
Acta Crystallogr D
, vol.69
, pp. 683-694
-
-
Karaca, E.1
Bonvin, A.M.J.J.2
-
12
-
-
0037442962
-
HADDOCK: a protein-protein docking approach based on biochemical or biophysical information
-
Dominguez C, Boelens R, Bonvin AMJJ. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J Am Chem Soc 2003;125:1731-1737.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.J.J.3
-
13
-
-
0027383637
-
A calculation strategy for the structure determination of symmetric dimers by 1H NMR
-
Nilges M. A calculation strategy for the structure determination of symmetric dimers by 1H NMR. Proteins 1993;17:297-309.
-
(1993)
Proteins
, vol.17
, pp. 297-309
-
-
Nilges, M.1
-
14
-
-
0001719957
-
Calculation of symmetric oligomer structures from NMR data
-
In: Krishna NR, Berliner L, editors.: Springer.
-
O'Donoghue SI, Nilges M. Calculation of symmetric oligomer structures from NMR data. In: Krishna NR, Berliner L, editors. Biological magnetic resonance. US: Biological Magnetic Resonance: Springer; 2002. Vol. 17, pp 131-161.
-
(2002)
Biological magnetic resonance. US: Biological Magnetic Resonance
, vol.17
, pp. 131-161
-
-
O'Donoghue, S.I.1
Nilges, M.2
-
15
-
-
84863570589
-
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
-
Lange OF, Rossi P, Sgourakis NG, Song Y, Lee HW, Aramini JM, Ertekin A, Xiao R, Acton TB, Montelione GT, Baker D. Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples. Proc Natl Acad Sci USA 2012;109:10873-10878.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 10873-10878
-
-
Lange, O.F.1
Rossi, P.2
Sgourakis, N.G.3
Song, Y.4
Lee, H.W.5
Aramini, J.M.6
Ertekin, A.7
Xiao, R.8
Acton, T.B.9
Montelione, G.T.10
Baker, D.11
-
16
-
-
79954990720
-
Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings
-
Sgourakis NG, Lange OF, DiMaio F, Andre I, Fitzkee NC, Rossi P, Montelione GT, Bax A, Baker D. Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings. J Am Chem Soc 2011;133:6288-6298.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 6288-6298
-
-
Sgourakis, N.G.1
Lange, O.F.2
DiMaio, F.3
Andre, I.4
Fitzkee, N.C.5
Rossi, P.6
Montelione, G.T.7
Bax, A.8
Baker, D.9
-
17
-
-
84862270506
-
Atomic model of the type III secretion system needle
-
Loquet A, Sgourakis NG, Gupta R, Giller K, Riedel D, Goosmann C, Griesinger C, Kolbe M, Baker D, Becker S, Lange A. Atomic model of the type III secretion system needle. Nature 2012;486:276-279.
-
(2012)
Nature
, vol.486
, pp. 276-279
-
-
Loquet, A.1
Sgourakis, N.G.2
Gupta, R.3
Giller, K.4
Riedel, D.5
Goosmann, C.6
Griesinger, C.7
Kolbe, M.8
Baker, D.9
Becker, S.10
Lange, A.11
-
18
-
-
42449146665
-
Consistent blind protein structure generation from NMR chemical shift data
-
Shen Y, Lange O, Delaglio F, Rossi P, Aramini JM, Liu G, Eletsky A, Wu Y, Singarapu KK, Lemak A, Ignatchenko A, Arrowsmith CH, Szyperski T, Montelione GT, Baker D, Bax A. Consistent blind protein structure generation from NMR chemical shift data. Proc Natl Acad Sci USA 2008;105:4685-4690.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 4685-4690
-
-
Shen, Y.1
Lange, O.2
Delaglio, F.3
Rossi, P.4
Aramini, J.M.5
Liu, G.6
Eletsky, A.7
Wu, Y.8
Singarapu, K.K.9
Lemak, A.10
Ignatchenko, A.11
Arrowsmith, C.H.12
Szyperski, T.13
Montelione, G.T.14
Baker, D.15
Bax, A.16
-
19
-
-
78650905964
-
Rosetta3: an object-oriented software suite for the simulation and design of macromolecules
-
Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, Ban YEA, Fleishman SJ, Corn JE, Kim DE, Lyskov S, Berrondo M, Mentzer S, Popovic Z, Havranek JJ, Karanicolas J, Das R, Meiler J, Kortemme T, Gray JJ, Kuhlman B, Baker D, Bradley P. Rosetta3: an object-oriented software suite for the simulation and design of macromolecules. Method Enzymol 2011:545-574.
-
(2011)
Method Enzymol
, pp. 545-574
-
-
Leaver-Fay, A.1
Tyka, M.2
Lewis, S.M.3
Lange, O.F.4
Thompson, J.5
Jacak, R.6
Kaufman, K.7
Renfrew, P.D.8
Smith, C.A.9
Sheffler, W.10
Davis, I.W.11
Cooper, S.12
Treuille, A.13
Mandell, D.J.14
Richter, F.15
Ban, Y.E.A.16
Fleishman, S.J.17
Corn, J.E.18
Kim, D.E.19
Lyskov, S.20
Berrondo, M.21
Mentzer, S.22
Popovic, Z.23
Havranek, J.J.24
Karanicolas, J.25
Das, R.26
Meiler, J.27
Kortemme, T.28
Gray, J.J.29
Kuhlman, B.30
Baker, D.31
Bradley, P.32
more..
-
20
-
-
84856803649
-
Resolution-adapted recombination of structural features significantly improves sampling in restraint-guided structure calculation
-
Lange OF, Baker D. Resolution-adapted recombination of structural features significantly improves sampling in restraint-guided structure calculation. Proteins 2012;80:884-895.
-
(2012)
Proteins
, vol.80
, pp. 884-895
-
-
Lange, O.F.1
Baker, D.2
-
21
-
-
84891960738
-
Structure of Est3 reveals a bimodal surface with differential roles in telomere replication
-
Rao T, Lubin JW, Armstrong GS, Tucey TM, Lundblad V, Wuttke DS. Structure of Est3 reveals a bimodal surface with differential roles in telomere replication. Proc Natl Acad Sci USA 2014;111:214-218.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 214-218
-
-
Rao, T.1
Lubin, J.W.2
Armstrong, G.S.3
Tucey, T.M.4
Lundblad, V.5
Wuttke, D.S.6
-
22
-
-
84930188491
-
The structure of mouse cytomegalovirus m04 protein obtained from sparse NMR data reveals a conserved fold of the m02-m06 viral immune modulator family
-
Sgourakis NG, Natarajan K, Ying J, Vogeli B, Boyd LF, Margulies DH, Bax A. The structure of mouse cytomegalovirus m04 protein obtained from sparse NMR data reveals a conserved fold of the m02-m06 viral immune modulator family. Structure 2014;22:1263-1273.
-
(2014)
Structure
, vol.22
, pp. 1263-1273
-
-
Sgourakis, N.G.1
Natarajan, K.2
Ying, J.3
Vogeli, B.4
Boyd, L.F.5
Margulies, D.H.6
Bax, A.7
-
23
-
-
84922104888
-
Less is more: structures of difficult targets with minimal constraints
-
Lloyd NR, Wuttke DS. Less is more: structures of difficult targets with minimal constraints. Structure 2014;22:1223-1224.
-
(2014)
Structure
, vol.22
, pp. 1223-1224
-
-
Lloyd, N.R.1
Wuttke, D.S.2
-
24
-
-
24944493938
-
Toward high-resolution de novo structure prediction for small proteins
-
Bradley P, Misura KM, Baker D. Toward high-resolution de novo structure prediction for small proteins. Science 2005;309:1868-1871.
-
(2005)
Science
, vol.309
, pp. 1868-1871
-
-
Bradley, P.1
Misura, K.M.2
Baker, D.3
-
25
-
-
79959458821
-
Modeling symmetric macromolecular structures in Rosetta3
-
DiMaio F, Leaver-Fay A, Bradley P, Baker D, Andre I. Modeling symmetric macromolecular structures in Rosetta3. PLoS One 2011;6.
-
(2011)
PLoS One
, vol.6
-
-
DiMaio, F.1
Leaver-Fay, A.2
Bradley, P.3
Baker, D.4
Andre, I.5
-
26
-
-
78349285507
-
Solution structure and function of YndB, an AHSA1 protein from Bacillus subtilis
-
Stark JL, Mercier KA, Mueller GA, Acton TB, Xiao R, Montelione GT, Powers R. Solution structure and function of YndB, an AHSA1 protein from Bacillus subtilis. Proteins 2010;78:3328-3340.
-
(2010)
Proteins
, vol.78
, pp. 3328-3340
-
-
Stark, J.L.1
Mercier, K.A.2
Mueller, G.A.3
Acton, T.B.4
Xiao, R.5
Montelione, G.T.6
Powers, R.7
-
27
-
-
0036931438
-
Activation of the ATPase activity of hsp90 by the stress-regulated cochaperone aha1
-
Panaretou B, Siligardi G, Meyer P, Maloney A, Sullivan JK, Singh S, Millson SH, Clarke PA, Naaby-Hansen S, Stein R, Cramer R, Mollapour M, Workman P, Piper PW, Pearl LH, Prodromou C. Activation of the ATPase activity of hsp90 by the stress-regulated cochaperone aha1. Mol Cell 2002;10:1307-1318.
-
(2002)
Mol Cell
, vol.10
, pp. 1307-1318
-
-
Panaretou, B.1
Siligardi, G.2
Meyer, P.3
Maloney, A.4
Sullivan, J.K.5
Singh, S.6
Millson, S.H.7
Clarke, P.A.8
Naaby-Hansen, S.9
Stein, R.10
Cramer, R.11
Mollapour, M.12
Workman, P.13
Piper, P.W.14
Pearl, L.H.15
Prodromou, C.16
-
28
-
-
23044509110
-
NMR data collection and analysis protocol for high-throughput protein structure determination
-
Liu G, Shen Y, Atreya HS, Parish D, Shao Y, Sukumaran DK, Xiao R, Yee A, Lemak A, Bhattacharya A, Acton TA, Arrowsmith CH, Montelione GT, Szyperski T. NMR data collection and analysis protocol for high-throughput protein structure determination. Proc Natl Acad Sci USA 2005;102:10487-10492.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 10487-10492
-
-
Liu, G.1
Shen, Y.2
Atreya, H.S.3
Parish, D.4
Shao, Y.5
Sukumaran, D.K.6
Xiao, R.7
Yee, A.8
Lemak, A.9
Bhattacharya, A.10
Acton, T.A.11
Arrowsmith, C.H.12
Montelione, G.T.13
Szyperski, T.14
-
29
-
-
0037551646
-
Alignment of biological macromolecules in novel nonionic liquid crystalline media for NMR experiments
-
Ruckert M, Otting G. Alignment of biological macromolecules in novel nonionic liquid crystalline media for NMR experiments. J Am Chem Soc 2000;122:7793-7797.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 7793-7797
-
-
Ruckert, M.1
Otting, G.2
-
30
-
-
0034852135
-
Characterization of molecular alignment in aqueous suspensions of Pf1 bacteriophage
-
Zweckstetter M, Bax A. Characterization of molecular alignment in aqueous suspensions of Pf1 bacteriophage. J Biomol NMR 2001;20:365-377.
-
(2001)
J Biomol NMR
, vol.20
, pp. 365-377
-
-
Zweckstetter, M.1
Bax, A.2
-
31
-
-
79958052166
-
Small angle X-ray scattering as a complementary tool for high-throughput structural studies
-
Grant TD, Luft JR, Wolfley JR, Tsuruta H, Martel A, Montelione GT, Snell EH. Small angle X-ray scattering as a complementary tool for high-throughput structural studies. Biopolymers 2011;95:517-530.
-
(2011)
Biopolymers
, vol.95
, pp. 517-530
-
-
Grant, T.D.1
Luft, J.R.2
Wolfley, J.R.3
Tsuruta, H.4
Martel, A.5
Montelione, G.T.6
Snell, E.H.7
-
32
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Lo Conte L, Chothia C, Janin J. The atomic structure of protein-protein recognition sites. J Mol Biol 1999;285:2177-2198.
-
(1999)
J Mol Biol
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
33
-
-
79952177781
-
A structure-based benchmark for protein-protein binding affinity
-
Kastritis PL, Moal IH, Hwang H, Weng Z, Bates PA, Bonvin AM, Janin J. A structure-based benchmark for protein-protein binding affinity. Protein Sci 2011;20:482-491.
-
(2011)
Protein Sci
, vol.20
, pp. 482-491
-
-
Kastritis, P.L.1
Moal, I.H.2
Hwang, H.3
Weng, Z.4
Bates, P.A.5
Bonvin, A.M.6
Janin, J.7
-
34
-
-
40549143036
-
The periplasmic domain of To1R from Haemophilus influenzae forms a dimer with a large hydrophobic groove: NMR solution structure and comparison to SAXS data
-
Parsons LM, Grishaev A, Bax A. The periplasmic domain of To1R from Haemophilus influenzae forms a dimer with a large hydrophobic groove: NMR solution structure and comparison to SAXS data. Biochemistry 2008;47:3131-3142.
-
(2008)
Biochemistry
, vol.47
, pp. 3131-3142
-
-
Parsons, L.M.1
Grishaev, A.2
Bax, A.3
-
35
-
-
74549178560
-
MolProbity: all-atom structure validation for macromolecular crystallography
-
Chen VB, Arendall WB, Headd JJ, Keedy DA, Immormino RM, Kapral GJ, Murray LW, Richardson JS, Richardson DC. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr D 2010;66:12-21.
-
(2010)
Acta Crystallogr D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
36
-
-
0032939176
-
Solution structure of the 40,000 Mr phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr
-
Garrett DS, Seok YJ, Peterkofsky A, Gronenborn AM, Clore GM. Solution structure of the 40, 000 Mr phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr. Nat Struct Biol 1999;6:166-173.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 166-173
-
-
Garrett, D.S.1
Seok, Y.J.2
Peterkofsky, A.3
Gronenborn, A.M.4
Clore, G.M.5
-
37
-
-
0030808350
-
Methods for measurement of intermolecular NOEs by multinuclear NMR spectroscopy: Application to a bacteriophage λ N-peptide/boxB RNA complex
-
Zwahlen C, Legault P, Vincent SJ, Greenblatt J, Konrat R, Kay LE. Methods for measurement of intermolecular NOEs by multinuclear NMR spectroscopy: Application to a bacteriophage λ N-peptide/boxB RNA complex. J Am Chem Soc 1997;119:6711-6721.
-
(1997)
J Am Chem Soc
, vol.119
, pp. 6711-6721
-
-
Zwahlen, C.1
Legault, P.2
Vincent, S.J.3
Greenblatt, J.4
Konrat, R.5
Kay, L.E.6
|