-
1
-
-
0033575897
-
Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA
-
Antson AA, et al. (1999) Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA. Nature 401(6750):235-242.
-
(1999)
Nature
, vol.401
, Issue.6750
, pp. 235-242
-
-
Antson, A.A.1
-
2
-
-
1842421817
-
The interaction of RNA with TRAP: The role of triplet repeats and separating spacer nucleotides
-
Hopcroft NH, et al. (2004) The interaction of RNA with TRAP: The role of triplet repeats and separating spacer nucleotides. J Mol Biol 338(1):43-53.
-
(2004)
J Mol Biol
, vol.338
, Issue.1
, pp. 43-53
-
-
Hopcroft, N.H.1
-
3
-
-
0028361572
-
TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a multisubunit complex that appears to recognize G/UAG repeats in the trpEDCFBA and trpG transcripts
-
Babitzke P, Stults JT, Shire SJ, Yanofsky C (1994) TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a multisubunit complex that appears to recognize G/UAG repeats in the trpEDCFBA and trpG transcripts. J Biol Chem 269(24): 16597-16604.
-
(1994)
J Biol Chem
, vol.269
, Issue.24
, pp. 16597-16604
-
-
Babitzke, P.1
Stults, J.T.2
Shire, S.J.3
Yanofsky, C.4
-
4
-
-
79953716258
-
TRAP binding to the Bacillus subtilis trp leader region RNA causes efficient transcription termination at a weak intrinsic terminator
-
Potter KD, Merlino NM, Jacobs T, Gollnick P (2011) TRAP binding to the Bacillus subtilis trp leader region RNA causes efficient transcription termination at a weak intrinsic terminator. Nucleic Acids Res 39(6):2092-2102.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.6
, pp. 2092-2102
-
-
Potter, K.D.1
Merlino, N.M.2
Jacobs, T.3
Gollnick, P.4
-
5
-
-
0028871292
-
Trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon
-
Merino E, Babitzke P, Yanofsky C (1995) trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon. J Bacteriol 177(22):6362-6370.
-
(1995)
J Bacteriol
, vol.177
, Issue.22
, pp. 6362-6370
-
-
Merino, E.1
Babitzke, P.2
Yanofsky, C.3
-
7
-
-
0037155838
-
The anti-trp RNA-binding attenuation protein (Anti-TRAP), AT, recognizes the tryptophan-activated RNA binding domain of the TRAP regulatory protein
-
Valbuzzi A, Gollnick P, Babitzke P, Yanofsky C (2002) The anti-trp RNA-binding attenuation protein (Anti-TRAP), AT, recognizes the tryptophan-activated RNA binding domain of the TRAP regulatory protein. J Biol Chem 277(12):10608-10613.
-
(2002)
J Biol Chem
, vol.277
, Issue.12
, pp. 10608-10613
-
-
Valbuzzi, A.1
Gollnick, P.2
Babitzke, P.3
Yanofsky, C.4
-
8
-
-
0034646407
-
A Bacillus subtilis operon containing genes of unknown function senses tRNATrp charging and regulates expression of the genes of tryptophan biosynthesis
-
Sarsero JP, Merino E, Yanofsky C (2000) A Bacillus subtilis operon containing genes of unknown function senses tRNATrp charging and regulates expression of the genes of tryptophan biosynthesis. Proc Natl Acad Sci USA 97(6):2656-2661.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.6
, pp. 2656-2661
-
-
Sarsero, J.P.1
Merino, E.2
Yanofsky, C.3
-
9
-
-
14644440509
-
Effects of tryptophan starvation on levels of the trp RNAbinding attenuation protein (TRAP) and anti-TRAP regulatory protein and their influence on trp operon expression in Bacillus subtilis
-
Yang WJ, Yanofsky C (2005) Effects of tryptophan starvation on levels of the trp RNAbinding attenuation protein (TRAP) and anti-TRAP regulatory protein and their influence on trp operon expression in Bacillus subtilis. J Bacteriol 187(6):1884-1891.
-
(2005)
J Bacteriol
, vol.187
, Issue.6
, pp. 1884-1891
-
-
Yang, W.J.1
Yanofsky, C.2
-
10
-
-
29144481616
-
Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction
-
Shevtsov MB, Chen Y, Gollnick P, Antson AA (2005) Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction. Proc Natl Acad Sci USA 102(49):17600-17605.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.49
, pp. 17600-17605
-
-
Shevtsov, M.B.1
Chen, Y.2
Gollnick, P.3
Antson, A.A.4
-
11
-
-
77957266145
-
Mechanism for pH-dependent gene regulation by amino-terminus-mediated homooligomerization of Bacillus subtilis anti-trp RNA-binding attenuation protein
-
Sachleben JR, McElroy CA, Gollnick P, Foster MP (2010) Mechanism for pH-dependent gene regulation by amino-terminus-mediated homooligomerization of Bacillus subtilis anti-trp RNA-binding attenuation protein. Proc Natl Acad Sci USA 107(35): 15385-15390.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.35
, pp. 15385-15390
-
-
Sachleben, J.R.1
McElroy, C.A.2
Gollnick, P.3
Foster, M.P.4
-
12
-
-
1942521723
-
Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP
-
Snyder D, Lary J, Chen Y, Gollnick P, Cole JL (2004) Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP. J Mol Biol 338(4):669-682.
-
(2004)
J Mol Biol
, vol.338
, Issue.4
, pp. 669-682
-
-
Snyder, D.1
Lary, J.2
Chen, Y.3
Gollnick, P.4
Cole, J.L.5
-
13
-
-
60549116163
-
The nature of the TRAP-Anti-TRAP complex
-
Watanabe M, et al. (2009) The nature of the TRAP-Anti-TRAP complex. Proc Natl Acad Sci USA 106(7):2176-2181.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.7
, pp. 2176-2181
-
-
Watanabe, M.1
-
14
-
-
40849126491
-
Alanine scanning mutagenesis of anti-TRAP (AT) reveals residues involved in binding to TRAP
-
Chen Y, Gollnick P (2008) Alanine scanning mutagenesis of anti-TRAP (AT) reveals residues involved in binding to TRAP. J Mol Biol 377(5):1529-1543.
-
(2008)
J Mol Biol
, vol.377
, Issue.5
, pp. 1529-1543
-
-
Chen, Y.1
Gollnick, P.2
-
15
-
-
40449116122
-
Physiological effects of anti-TRAP protein activity and tRNA(Trp) charging on trp operon expression in Bacillus subtilis
-
Cruz-Vera LR, Gong M, Yanofsky C (2008) Physiological effects of anti-TRAP protein activity and tRNA(Trp) charging on trp operon expression in Bacillus subtilis. J Bacteriol 190(6):1937-1945.
-
(2008)
J Bacteriol
, vol.190
, Issue.6
, pp. 1937-1945
-
-
Cruz-Vera, L.R.1
Gong, M.2
Yanofsky, C.3
-
16
-
-
0035032449
-
The mechanism of RNA binding to TRAP: Initiation and cooperative interactions
-
Elliott MB, Gottlieb PA, Gollnick P (2001) The mechanism of RNA binding to TRAP: Initiation and cooperative interactions. RNA 7(1):85-93.
-
(2001)
RNA
, vol.7
, Issue.1
, pp. 85-93
-
-
Elliott, M.B.1
Gottlieb, P.A.2
Gollnick, P.3
-
17
-
-
17544365656
-
Kinetic and thermodynamic analysis of the interaction between TRAP (trp RNA-binding attenuation protein) of Bacillus subtilis and trp leader RNA
-
Baumann C, Otridge J, Gollnick P (1996) Kinetic and thermodynamic analysis of the interaction between TRAP (trp RNA-binding attenuation protein) of Bacillus subtilis and trp leader RNA. J Biol Chem 271(21):12269-12274.
-
(1996)
J Biol Chem
, vol.271
, Issue.21
, pp. 12269-12274
-
-
Baumann, C.1
Otridge, J.2
Gollnick, P.3
-
18
-
-
3242782478
-
Cellular levels of trp RNA-binding attenuation protein in Bacillus subtilis
-
McCabe BC, Gollnick P (2004) Cellular levels of trp RNA-binding attenuation protein in Bacillus subtilis. J Bacteriol 186(15):5157-5159.
-
(2004)
J Bacteriol
, vol.186
, Issue.15
, pp. 5157-5159
-
-
McCabe, B.C.1
Gollnick, P.2
-
19
-
-
0025695355
-
Determination of turgor pressure in Bacillus subtilis: A possible role for K+ in turgor regulation
-
Whatmore AM, Reed RH (1990) Determination of turgor pressure in Bacillus subtilis: A possible role for K+ in turgor regulation. J Gen Microbiol 136(12):2521-2526.
-
(1990)
J Gen Microbiol
, vol.136
, Issue.12
, pp. 2521-2526
-
-
Whatmore, A.M.1
Reed, R.H.2
-
20
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling
-
Schuck P (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys J 78(3):1606-1619.
-
(2000)
Biophys J
, vol.78
, Issue.3
, pp. 1606-1619
-
-
Schuck, P.1
-
21
-
-
80052470762
-
Prediction of hydrodynamic and other solution properties of rigid proteins from atomic-and residue-level models
-
Ortega A, Amorós D, García de la Torre J (2011) Prediction of hydrodynamic and other solution properties of rigid proteins from atomic-and residue-level models. Biophys J 101(4):892-898.
-
(2011)
Biophys J
, vol.101
, Issue.4
, pp. 892-898
-
-
Ortega, A.1
Amorós, D.2
De La Torre, G.J.3
-
22
-
-
0042855798
-
On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation
-
Schuck P (2003) On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. Anal Biochem 320(1):104-124.
-
(2003)
Anal Biochem
, vol.320
, Issue.1
, pp. 104-124
-
-
Schuck, P.1
-
23
-
-
37149049312
-
X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution
-
Putnam CD, Hammel M, Hura GL, Tainer JA (2007) X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution. Q Rev Biophys 40(3):191-285.
-
(2007)
Q Rev Biophys
, vol.40
, Issue.3
, pp. 191-285
-
-
Putnam, C.D.1
Hammel, M.2
Hura, G.L.3
Tainer, J.A.4
-
24
-
-
0035010533
-
Determination of domain structure of proteins from X-ray solution scattering
-
Svergun DI, Petoukhov MV, Koch MHJ (2001) Determination of domain structure of proteins from X-ray solution scattering. Biophys J 80(6):2946-2953.
-
(2001)
Biophys J
, vol.80
, Issue.6
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.J.3
-
25
-
-
0028964336
-
The structure of trp RNA-binding attenuation protein
-
Antson AA, et al. (1995) The structure of trp RNA-binding attenuation protein. Nature 374(6524):693-700.
-
(1995)
Nature
, vol.374
, Issue.6524
, pp. 693-700
-
-
Antson, A.A.1
-
26
-
-
0029185933
-
CRYSOL-A program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun D, Barberato C, Koch MHJ (1995) CRYSOL-A program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates. J Appl Cryst 28:768-773.
-
(1995)
J Appl Cryst
, vol.28
, pp. 768-773
-
-
Svergun, D.1
Barberato, C.2
Koch, M.H.J.3
-
27
-
-
0141484613
-
PRIMUS: A Windows PC-based system for small-angle scattering data analysis
-
Konarev PV, Volkov VV, Sokolova AV, Koch MHJ, Svergun DI (2003) PRIMUS: A Windows PC-based system for small-angle scattering data analysis. J Appl Cryst 36: 1277-1282.
-
(2003)
J Appl Cryst
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
28
-
-
2442527851
-
Tandem mass spectrometry defines the stoichiometry and quaternary structural arrangement of tryptophan molecules in the multiprotein complex TRAP
-
McCammon MG, Hernández H, Sobott F, Robinson CV (2004) Tandem mass spectrometry defines the stoichiometry and quaternary structural arrangement of tryptophan molecules in the multiprotein complex TRAP. J Am Chem Soc 126(19): 5950-5951.
-
(2004)
J Am Chem Soc
, vol.126
, Issue.19
, pp. 5950-5951
-
-
McCammon, M.G.1
Hernández, H.2
Sobott, F.3
Robinson, C.V.4
-
29
-
-
0027318513
-
Macromolecular crowding: Biochemical, biophysical, and physiological consequences
-
Zimmerman SB, Minton AP (1993) Macromolecular crowding: Biochemical, biophysical, and physiological consequences. Annu Rev Biophys Biomol Struct 22:27-65.
-
(1993)
Annu Rev Biophys Biomol Struct
, vol.22
, pp. 27-65
-
-
Zimmerman, S.B.1
Minton, A.P.2
-
30
-
-
0021238610
-
Equilibrium theory for the clustering of bivalent cell surface receptors by trivalent ligands. Application to histamine release from basophils
-
Goldstein B, Perelson AS (1984) Equilibrium theory for the clustering of bivalent cell surface receptors by trivalent ligands. Application to histamine release from basophils. Biophys J 45(6):1109-1123.
-
(1984)
Biophys J
, vol.45
, Issue.6
, pp. 1109-1123
-
-
Goldstein, B.1
Perelson, A.S.2
-
31
-
-
1842311076
-
Direct demonstration that receptor crosslinking or aggregation is important in insulin action
-
Kahn CR, Baird KL, Jarrett DB, Flier JS (1978) Direct demonstration that receptor crosslinking or aggregation is important in insulin action. Proc Natl Acad Sci USA 75(9):4209-4213.
-
(1978)
Proc Natl Acad Sci USA
, vol.75
, Issue.9
, pp. 4209-4213
-
-
Kahn, C.R.1
Baird, K.L.2
Jarrett, D.B.3
Flier, J.S.4
-
32
-
-
84872694541
-
Implementation and performance of SIBYLS: A dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source
-
Classen S, et al. (2013) Implementation and performance of SIBYLS: A dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source. J Appl Cryst 46(Pt 1):1-13.
-
(2013)
J Appl Cryst
, vol.46
, Issue.PART 1
, pp. 1-13
-
-
Classen, S.1
-
33
-
-
68349097394
-
Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)
-
Hura GL, et al. (2009) Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS). Nat Methods 6(8):606-612.
-
(2009)
Nat Methods
, vol.6
, Issue.8
, pp. 606-612
-
-
Hura, G.L.1
-
34
-
-
0026910457
-
Determination of the Regularization Parameter in Indirect-Transform Methods Using Perceptual Criteria
-
Svergun DI (1992) Determination of the Regularization Parameter in Indirect-Transform Methods Using Perceptual Criteria. J Appl Cryst 25:495-503.
-
(1992)
J Appl Cryst
, vol.25
, pp. 495-503
-
-
Svergun, D.I.1
-
35
-
-
0037701585
-
Uniqueness of ab initio shape determination in smallangle scattering
-
Volkov VV, Svergun DI (2003) Uniqueness of ab initio shape determination in smallangle scattering. J Appl Cryst 36(3):860-864.
-
(2003)
J Appl Cryst
, vol.36
, Issue.3
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
-
36
-
-
0033022150
-
Regulatory features of the trp operon and the crystal structure of the trp RNA-binding attenuation protein from Bacillus stearothermophilus
-
Chen Xp, et al. (1999) Regulatory features of the trp operon and the crystal structure of the trp RNA-binding attenuation protein from Bacillus stearothermophilus. J Mol Biol 289(4):1003-1016.
-
(1999)
J Mol Biol
, vol.289
, Issue.4
, pp. 1003-1016
-
-
Xp, C.1
-
37
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio F, et al. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6(3):277-293.
-
(1995)
J Biomol NMR
, vol.6
, Issue.3
, pp. 277-293
-
-
Delaglio, F.1
-
38
-
-
34249765651
-
NMR View: A computer program for the visualization and analysis of NMR data
-
Johnson BA, Blevins RA (1994) NMR View: A computer program for the visualization and analysis of NMR data. J Biomol NMR 4(5):603-614.
-
(1994)
J Biomol NMR
, vol.4
, Issue.5
, pp. 603-614
-
-
Johnson, B.A.1
Blevins, R.A.2
-
39
-
-
84863971751
-
Surface-induced dissociation of ion mobilityseparated noncovalent complexes in a quadrupole/time-of-flight mass spectrometer
-
Zhou MW, Huang CS, Wysocki VH (2012) Surface-induced dissociation of ion mobilityseparated noncovalent complexes in a quadrupole/time-of-flight mass spectrometer. Anal Chem 84(14):6016-6023.
-
(2012)
Anal Chem
, vol.84
, Issue.14
, pp. 6016-6023
-
-
Zhou, M.W.1
Huang, C.S.2
Wysocki, V.H.3
|