메뉴 건너뛰기




Volumn 16, Issue 1, 2015, Pages

Populational landscape of INDELs affecting transcription factor-binding sites in humans

Author keywords

INDEL; Population genetics; Transcription factor; Transcription factor binding site

Indexed keywords

TRANSCRIPTION FACTOR; PROTEIN BINDING;

EID: 84937231465     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1744-5     Document Type: Article
Times cited : (6)

References (44)
  • 2
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • Wray GA. The evolutionary significance of cis-regulatory mutations. Nat Rev Genet. 2007;8:206-16.
    • (2007) Nat Rev Genet , vol.8 , pp. 206-216
    • Wray, G.A.1
  • 3
    • 84925680345 scopus 로고    scopus 로고
    • Tracing the evolution of lineage-specific transcription factor binding sites in a birth-death framework
    • Yokoyama KD, Zhang Y, Ma J. Tracing the evolution of lineage-specific transcription factor binding sites in a birth-death framework. PLoS Comput Biol. 2014;10, e1003771.
    • (2014) PLoS Comput Biol , vol.10
    • Yokoyama, K.D.1    Zhang, Y.2    Ma, J.3
  • 5
    • 84877812628 scopus 로고    scopus 로고
    • Testing for natural selection in human exonic splicing regulators associated with evolutionary rate shifts
    • Ramalho RF, Gelfman S, de JE S, Ast G, de SJ S, Meyer D. Testing for natural selection in human exonic splicing regulators associated with evolutionary rate shifts. J Mol Evol. 2013;76:228-39.
    • (2013) J Mol Evol , vol.76 , pp. 228-239
    • Ramalho, R.F.1    Gelfman, S.2    JE, S.3    Ast, G.4    SJ, S.5    Meyer, D.6
  • 7
    • 84887463729 scopus 로고    scopus 로고
    • Beyond the ENCODE project: using genomics and epigenomics strategies to study enhancer evolution
    • Sakabe NJ, Nobrega MA. Beyond the ENCODE project: using genomics and epigenomics strategies to study enhancer evolution. Philos Trans R Soc Lond B Biol Sci. 2013;368:20130022.
    • (2013) Philos Trans R Soc Lond B Biol Sci , vol.368 , pp. 20130022
    • Sakabe, N.J.1    Nobrega, M.A.2
  • 16
    • 84956964144 scopus 로고    scopus 로고
    • A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators
    • Hurst L, Sachenkova O, Daub C, Forrest A, Huminiecki L, Consortium F. A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators. Genome Biol. 2014;15:413.
    • (2014) Genome Biol , vol.15 , pp. 413
    • Hurst, L.1    Sachenkova, O.2    Daub, C.3    Forrest, A.4    Huminiecki, L.5    Consortium, F.6
  • 18
    • 84870278203 scopus 로고    scopus 로고
    • Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome
    • Ni X, Zhang YE, Nègre N, Chen S, Long M, White KP. Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome. PLoS Biol. 2012;10, e1001420.
    • (2012) PLoS Biol , vol.10
    • Ni, X.1    Zhang, Y.E.2    Nègre, N.3    Chen, S.4    Long, M.5    White, K.P.6
  • 21
    • 63149157274 scopus 로고    scopus 로고
    • Molecular genetics of human pigmentation diversity
    • Sturm RA. Molecular genetics of human pigmentation diversity. Hum Mol Genet. 2009;18:R9-R17.
    • (2009) Hum Mol Genet , vol.18 , pp. R9-R17
    • Sturm, R.A.1
  • 25
    • 30744472932 scopus 로고    scopus 로고
    • Contrasting modes of evolution between vertebrate sweet/umami receptor genes and bitter receptor genes
    • Shi P, Zhang J. Contrasting modes of evolution between vertebrate sweet/umami receptor genes and bitter receptor genes. Mol Biol Evol. 2006;23:292-300.
    • (2006) Mol Biol Evol , vol.23 , pp. 292-300
    • Shi, P.1    Zhang, J.2
  • 27
    • 84912079676 scopus 로고    scopus 로고
    • Umami taste components and their sources in Asian foods
    • Hajeb P, Jinap S. Umami taste components and their sources in Asian foods. Crit Rev Food Sci Nutr. 2015;55:778-91.
    • (2015) Crit Rev Food Sci Nutr , vol.55 , pp. 778-791
    • Hajeb, P.1    Jinap, S.2
  • 33
    • 84881616630 scopus 로고    scopus 로고
    • SNP ascertainment bias in population genetic analyses: why it is important, and how to correct it
    • Lachance J, Tishkoff SA. SNP ascertainment bias in population genetic analyses: why it is important, and how to correct it. Bioessays. 2013;35:780-6.
    • (2013) Bioessays , vol.35 , pp. 780-786
    • Lachance, J.1    Tishkoff, S.A.2
  • 35
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay JC, Wu CI. Hitchhiking under positive Darwinian selection. Genetics. 2000;155:1405-13.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 36
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu YX, Li WH. Statistical tests of neutrality of mutations. Genetics. 1993;133:693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 37
    • 0036897674 scopus 로고    scopus 로고
    • Statistical properties of new neutrality tests against population growth
    • Ramos-Onsins SE, Rozas J. Statistical properties of new neutrality tests against population growth. Mol Biol Evol. 2002;19:2092-100.
    • (2002) Mol Biol Evol , vol.19 , pp. 2092-2100
    • Ramos-Onsins, S.E.1    Rozas, J.2
  • 38
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 1989;123:585-95.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 41
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
    • Cingolani P, Platts A, Wang LL EL, Coon M, Nguyen T, Wang L, et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin). 2012;6:80-92.
    • (2012) Fly (Austin) , vol.6 , pp. 80-92
    • Cingolani, P.1    Platts, A.2    Wang LL, E.L.3    Coon, M.4    Nguyen, T.5    Wang, L.6    Land, S.J.7    Lu, X.8    Ruden, D.M.9
  • 42
    • 78650649545 scopus 로고    scopus 로고
    • R: A Language and Environment for Statistical Computing
    • Team R. R: A Language and Environment for Statistical Computing. 2015.
    • (2015)
    • Team, R.1
  • 43
    • 23744500479 scopus 로고    scopus 로고
    • SciPy: Open source scientific tools for Python
    • Jones E, Oliphant T, Peterson P. SciPy: Open source scientific tools for Python. 2014.
    • (2014)
    • Jones, E.1    Oliphant, T.2    Peterson, P.3
  • 44
    • 84860718683 scopus 로고    scopus 로고
    • clusterProfiler: an R package for comparing biological themes among gene clusters
    • Yu G, Wang L-GG, Han Y, He Q-YY. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS. 2012;16:284-7.
    • (2012) OMICS , vol.16 , pp. 284-287
    • Yu, G.1    Wang, L.-G.2    Han, Y.3    He, Q.-Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.