메뉴 건너뛰기




Volumn 16, Issue 1, 2015, Pages

The role of climate and out-of-Africa migration in the frequencies of risk alleles for 21 human diseases

Author keywords

Environmental adaptation; Genome wide association studies; Human disease risk loci; Positive selection; Serial founder effect

Indexed keywords

ADAPTATION; AFRICA; ALOPECIA AREATA; ARTICLE; ASTHMA; BILIARY CIRRHOSIS; BREAST CANCER; CELIAC DISEASE; CLIMATE; COLORECTAL CANCER; CROHN DISEASE; DISEASE ASSOCIATION; DISEASE PREDISPOSITION; GENE FREQUENCY; GENETIC PREDISPOSITION; GENETIC RISK; HETEROZYGOSITY; HUMAN; HUMAN IMPACT (ENVIRONMENT); HUMIDITY; INSULIN DEPENDENT DIABETES MELLITUS; MELANOMA; MEMBRANOUS GLOMERULONEPHRITIS; MIGRATION; NEUROBLASTOMA; NON INSULIN DEPENDENT DIABETES MELLITUS; NULL ALLELE; OVARY POLYCYSTIC DISEASE; PANCREAS CANCER; PARKINSON DISEASE; PRIMARY BILIARY CIRRHOSIS; PROSTATE CANCER; RHEUMATOID ARTHRITIS; SINGLE NUCLEOTIDE POLYMORPHISM; SYSTEMIC LUPUS ERYTHEMATOSUS; SYSTEMIC SCLEROSIS; ULCERATIVE COLITIS; ALLELE; DIABETES MELLITUS, TYPE 2; ENVIRONMENT; GENETIC ASSOCIATION STUDY; GENETICS; GENOTYPE ENVIRONMENT INTERACTION; HETEROZYGOTE; MOLECULAR EVOLUTION;

EID: 84937034913     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/s12863-015-0239-3     Document Type: Article
Times cited : (6)

References (36)
  • 1
    • 0014944278 scopus 로고
    • Increased sickling of parasitised erythrocytes as mechanism of resistance against malaria in the sickle-cell trait
    • Luzzatto L, Nwachuku-Jarrett ES, Reddy S. Increased sickling of parasitised erythrocytes as mechanism of resistance against malaria in the sickle-cell trait. Lancet. 1970;1:319-21.
    • (1970) Lancet , vol.1 , pp. 319-321
    • Luzzatto, L.1    Nwachuku-Jarrett, E.S.2    Reddy, S.3
  • 3
    • 76749097550 scopus 로고    scopus 로고
    • The genetics of human adaptation: Hard sweeps, soft sweeps, and polygenic adaptation
    • Pritchard JK, Pickrell JK, Coop G. The genetics of human adaptation: Hard sweeps, soft sweeps, and polygenic adaptation. Curr Biol. 2010;20(4):R208-15.
    • (2010) Curr Biol , vol.20 , Issue.4 , pp. R208-R215
    • Pritchard, J.K.1    Pickrell, J.K.2    Coop, G.3
  • 4
    • 0016814243 scopus 로고
    • The maintenance of genetic variability by mutation in a polygenic character with linked loci
    • Lande R. The maintenance of genetic variability by mutation in a polygenic character with linked loci. Genet Res. 1975;26:221-35. doi: 10.1017/s0016672300016037 .
    • (1975) Genet Res , vol.26 , pp. 221-235
    • Lande, R.1
  • 5
    • 0037370384 scopus 로고    scopus 로고
    • The application of molecular genetic approaches to the study of human evolution
    • Cavalli-Sforza LL, Feldman MW. The application of molecular genetic approaches to the study of human evolution. Nat Genet. 2003;33(Supplement):266-75.
    • (2003) Nat Genet , vol.33 , pp. 266-275
    • Cavalli-Sforza, L.L.1    Feldman, M.W.2
  • 7
    • 79955103752 scopus 로고    scopus 로고
    • Hunter-gatherer genomic diversity suggests a southern African origin for modern humans
    • Henn BM, Gignoux CR, Jobin M, Granka JM, Macpherson J, et al. Hunter-gatherer genomic diversity suggests a southern African origin for modern humans. Proc Natl Acad Sci U S A. 2011;108:5154-62.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 5154-5162
    • Henn, B.M.1    Gignoux, C.R.2    Jobin, M.3    Granka, J.M.4    Macpherson, J.5
  • 8
    • 27644509150 scopus 로고    scopus 로고
    • Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa
    • Ramachandran S, Deshpande O, Roseman CC, Rosenberg NA, Feldman MW, et al. Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. Proc Natl Acad Sci. 2005;102:15942-7.
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 15942-15947
    • Ramachandran, S.1    Deshpande, O.2    Roseman, C.C.3    Rosenberg, N.A.4    Feldman, M.W.5
  • 9
    • 39749181521 scopus 로고    scopus 로고
    • Worldwide human relationships inferred from genome-wide patterns of variation
    • Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, et al. Worldwide human relationships inferred from genome-wide patterns of variation. Science. 2008;319:1100-4.
    • (2008) Science , vol.319 , pp. 1100-1104
    • Li, J.Z.1    Absher, D.M.2    Tang, H.3    Southwick, A.M.4    Casto, A.M.5
  • 11
    • 47349131008 scopus 로고    scopus 로고
    • Natural selection along an environmental gradient: a classic cline in mouse pigmentation
    • Mullen LM, Hoekstra HE. Natural selection along an environmental gradient: a classic cline in mouse pigmentation. Evolution. 2008;62:1555-69.
    • (2008) Evolution , vol.62 , pp. 1555-1569
    • Mullen, L.M.1    Hoekstra, H.E.2
  • 12
    • 83455243198 scopus 로고    scopus 로고
    • Environment-sensitive epigenetics and the heritability of complex diseases
    • Furrow RE, Christiansen FB, Feldman MW. Environment-sensitive epigenetics and the heritability of complex diseases. Genetics. 2011;189:1377-87. doi: 10.1534/genetics.111.131912 .
    • (2011) Genetics , vol.189 , pp. 1377-1387
    • Furrow, R.E.1    Christiansen, F.B.2    Feldman, M.W.3
  • 13
    • 84895867277 scopus 로고    scopus 로고
    • The deleterious mutation load is insensitive to recent population history
    • Simons YB, Turchin MC, Pritchard JK, Sella G. The deleterious mutation load is insensitive to recent population history. Nat Genet. 2014;46:220-4.
    • (2014) Nat Genet , vol.46 , pp. 220-224
    • Simons, Y.B.1    Turchin, M.C.2    Pritchard, J.K.3    Sella, G.4
  • 14
    • 84926169268 scopus 로고    scopus 로고
    • No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans
    • Do R, Balick D, Heng L, Adzhubei I, Sunyaev S, et al. No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans. Nat Genet. 2015;17:126-31.
    • (2015) Nat Genet , vol.17 , pp. 126-131
    • Do, R.1    Balick, D.2    Heng, L.3    Adzhubei, I.4    Sunyaev, S.5
  • 15
    • 84880076219 scopus 로고    scopus 로고
    • Gene expression drives local adaptation in humans
    • Fraser HB. Gene expression drives local adaptation in humans. Genome Res. 2013;23:1089-96. doi: 10.1101/gr.152710.112 .
    • (2013) Genome Res , vol.23 , pp. 1089-1096
    • Fraser, H.B.1
  • 16
    • 84860547622 scopus 로고    scopus 로고
    • Type 2 diabetes risk alleles demonstrate extreme directional differentiation among human populations, compared to other diseases
    • Chen R, Corona E, Sikora M, Dudley JT, Morgan AA, et al. Type 2 diabetes risk alleles demonstrate extreme directional differentiation among human populations, compared to other diseases. PLoS Genet. 2012;8(4):e1002621. doi: 10.1371/journal.pgen.1002621 .
    • (2012) PLoS Genet , vol.8 , Issue.4
    • Chen, R.1    Corona, E.2    Sikora, M.3    Dudley, J.T.4    Morgan, A.A.5
  • 17
    • 84878484584 scopus 로고    scopus 로고
    • Analysis of the genetic basis of disease in the context of worldwide human relationships and migration
    • Corona E, Chen R, Sikora M, Morgan A, Patel C, et al. Analysis of the genetic basis of disease in the context of worldwide human relationships and migration. PLoS Genet. 2013;9(5):e1003447.
    • (2013) PLoS Genet , vol.9 , Issue.5
    • Corona, E.1    Chen, R.2    Sikora, M.3    Morgan, A.4    Patel, C.5
  • 18
    • 84912077079 scopus 로고    scopus 로고
    • A population genetic signal of polygenic adaptation
    • Berg JJ, Coop G. A population genetic signal of polygenic adaptation. PLoS Genet. 2014;10(8), e1004412. doi: 10.1371/journal.pgen.1004412 .
    • (2014) PLoS Genet , vol.10 , Issue.8
    • Berg, J.J.1    Coop, G.2
  • 19
    • 84893730773 scopus 로고    scopus 로고
    • Revisiting the thrifty gene hypothesis via 65 loci associated with susceptibility to type 2 diabetes
    • Ayub Q, Moutsianas L, Chen Y, Panoutsopoulou K, Colonna V, et al. Revisiting the thrifty gene hypothesis via 65 loci associated with susceptibility to type 2 diabetes. Am J Hum Genet. 2014;94:176-85.
    • (2014) Am J Hum Genet , vol.94 , pp. 176-185
    • Ayub, Q.1    Moutsianas, L.2    Chen, Y.3    Panoutsopoulou, K.4    Colonna, V.5
  • 21
    • 70349566593 scopus 로고
    • Diabetes mellitus: A "thrifty" genotype rendered detrimental by "progress"?
    • Neel JV. Diabetes mellitus: A "thrifty" genotype rendered detrimental by "progress"? Am J Hum Genet. 1962;14:353-62.
    • (1962) Am J Hum Genet , vol.14 , pp. 353-362
    • Neel, J.V.1
  • 22
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources
    • Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nat Protoc. 2009;4(1):44-57.
    • (2009) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 23
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang DW, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009;37(1):1-13.
    • (2009) Nucleic Acids Res , vol.37 , Issue.1 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 24
    • 84883774412 scopus 로고    scopus 로고
    • Robust identification of local adaptation from allele frequencies
    • Günther T, Coop G. Robust identification of local adaptation from allele frequencies. Genetics. 2013;195:205-20.
    • (2013) Genetics , vol.195 , pp. 205-220
    • Günther, T.1    Coop, G.2
  • 25
    • 77956491134 scopus 로고    scopus 로고
    • Using environmental correlations to identify loci underlying local adaptation
    • Coop G, Witonsky D, Di Rienzo A, Pritchard JK. Using environmental correlations to identify loci underlying local adaptation. Genetics. 2010;185:1411-23.
    • (2010) Genetics , vol.185 , pp. 1411-1423
    • Coop, G.1    Witonsky, D.2    Rienzo, A.3    Pritchard, J.K.4
  • 27
    • 4143142003 scopus 로고    scopus 로고
    • A functional genomics strategy reveals Rora as a component of the mammalian circadian clock
    • Sato TK, Panda S, Miraglia LJ, Reyes TM, Rudic RD, et al. A functional genomics strategy reveals Rora as a component of the mammalian circadian clock. Neuron. 2004;43:527-37.
    • (2004) Neuron , vol.43 , pp. 527-537
    • Sato, T.K.1    Panda, S.2    Miraglia, L.J.3    Reyes, T.M.4    Rudic, R.D.5
  • 28
    • 33947168323 scopus 로고    scopus 로고
    • The orphan nuclear receptor Rev-erbalpha: a transcriptional link between circadian rhythmicity and cardiometabolic disease
    • Fontaine C, Staels B. The orphan nuclear receptor Rev-erbalpha: a transcriptional link between circadian rhythmicity and cardiometabolic disease. Curr Opin Lipidol. 2007;18:141-6.
    • (2007) Curr Opin Lipidol , vol.18 , pp. 141-146
    • Fontaine, C.1    Staels, B.2
  • 29
    • 4344668155 scopus 로고    scopus 로고
    • RORalpha regulates the expression of genes involved in lipid homeostasis in skeletal muscle cells: caveolin-3 and CPT-1 are direct targets of ROR
    • Lau P, Nixon SJ, Parton RG, Muscat GE. RORalpha regulates the expression of genes involved in lipid homeostasis in skeletal muscle cells: caveolin-3 and CPT-1 are direct targets of ROR. J Biol Chem. 2004;279:36828-40.
    • (2004) J Biol Chem , vol.279 , pp. 36828-36840
    • Lau, P.1    Nixon, S.J.2    Parton, R.G.3    Muscat, G.E.4
  • 30
    • 0024333883 scopus 로고
    • Characterization of the gene for prostate-specific antigen, a human glandular kallikrein
    • Lundwall A. Characterization of the gene for prostate-specific antigen, a human glandular kallikrein. Biochem Biophys Res Commun. 1989;161:1151-9.
    • (1989) Biochem Biophys Res Commun , vol.161 , pp. 1151-1159
    • Lundwall, A.1
  • 31
    • 56549098554 scopus 로고    scopus 로고
    • Thrifty genes for obesity, an attractive but flawed idea, and an alternative perspective: the 'drifty gene' hypothesis
    • Speakman JR. Thrifty genes for obesity, an attractive but flawed idea, and an alternative perspective: the 'drifty gene' hypothesis. Int J Obes (Lond). 2008;32:1611-7.
    • (2008) Int J Obes (Lond) , vol.32 , pp. 1611-1617
    • Speakman, J.R.1
  • 32
    • 77956331627 scopus 로고    scopus 로고
    • Integrating common and rare genetic variation in diverse human populations
    • The International HapMap 3 Consortium. Integrating common and rare genetic variation in diverse human populations. Nature. 2010;467:52-8.
    • (2010) Nature , vol.467 , pp. 52-58
  • 35
    • 0029768948 scopus 로고    scopus 로고
    • The NCEP/NCAR 40-Year Reanalysis Project
    • Data provided by the NOAA/OAR/ESRL PSD, Boulder, Colorado, USA
    • Kalnay E, Kanamitsu M, Kistler R, Collins W, Deaven D, et al (1996) The NCEP/NCAR 40-Year Reanalysis Project. Bull Amer Meteor Soc 77(3): 437-470. data provided by the NOAA/OAR/ESRL PSD, Boulder, Colorado, USA, from their website at http://www.esrl.noaa.gov/psd/
    • (1996) Bull Amer Meteor Soc , vol.77 , Issue.3 , pp. 437-470
    • Kalnay, E.1    Kanamitsu, M.2    Kistler, R.3    Collins, W.4    Deaven, D.5
  • 36
    • 84901027089 scopus 로고    scopus 로고
    • On the stability of the Bayenv method in assessing human SNP-environment associations
    • Blair LM, Granka JM, Feldman MW. On the stability of the Bayenv method in assessing human SNP-environment associations. Hum Genomics. 2014;8:1.
    • (2014) Hum Genomics , vol.8 , pp. 1
    • Blair, L.M.1    Granka, J.M.2    Feldman, M.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.