A Delphi technology foresight study: Mapping social construction of scientific evidence on metagenomics tests for water safety

PLoS ONE

Volumn 10, Issue 6, 2015, Pages

  Birko, Stanislav ^c   Dove, Edward S ^d   Özdemir, Vural ^a,b  

^a GAZIANTEP UNIVERSITY   (Turkey)

^b AMRITA UNIVERSITY   (India)

^c MCGILL UNIVERSITY   (Canada)

^d UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

WATER; WATER POLLUTANT;

ADULT; ARTICLE; CONTROLLED STUDY; DELPHI STUDY; FEMALE; HUMAN; LEGAL EVIDENCE; MALE; MEDICAL EXPERT; METAGENOMICS; PARTICIPATORY MANAGEMENT; SAFETY; WATER SAFETY; ANALYSIS; BACTERIUM; CLASSIFICATION; GENETICS; HEALTH PROMOTION; MIDDLE AGED; PROCEDURES; STANDARDS; WATER POLLUTANT; WATER QUALITY; WATER SUPPLY;

ADULT; BACTERIA; DELPHI TECHNIQUE; FEMALE; HEALTH PROMOTION; HUMANS; MALE; METAGENOMICS; MIDDLE AGED; WATER POLLUTANTS; WATER QUALITY; WATER SUPPLY;

EID: 84935462912     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0129706     Document Type: Article

References (67)

1. Qu X, Brame J, Li Q, Alvarez PJ (2013) Nanotechnology for a safe and sustainable water supply: enabling integrated water treatment and reuse. Acc Chem Res 46: 834-843. doi: 10.1021/ar300029v PMID: 22738389
2. Grantham TE, Merenlender AM, Resh VH (2010). Climatic influences and anthropogenic stressors: an integrated framework for streamflow management in Mediterranean-climate California, U.S.A. Freshwater Biology 55 (Suppl. 1): 188-204.
3. Millennium Ecosystem Assessment (2005) Ecosystem and Human Well Being: General Synthesis. World Resource Institute: Washington, DC.
4. McQuaig S, Griffith J, Harwood VJ (2012) Association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution. Appl Environ Microbiol 78: 6423-6432. doi: 10.1128/AEM.00024-12 PMID: 22773625
5. Ferguson AS, Layton AC, Mailloux BJ, Culligan PJ, Williams DE, et al. (2012) Comparison of fecal indicators with pathogenic bacteria and rotavirus in groundwater. Sci Total Environ 431: 314-322. doi: 10.1016/j.scitotenv.2012.05.060 PMID: 22705866
6. Neelakanta G, Sultana H (2013) The use of metagenomic approaches to analyze changes in microbial communities. Microbiol Insights 6: 37-48. doi: 10.4137/MBI.S10819 PMID: 24826073
7. Staley JT, Konopka A (1985) Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 39: 321-346. PMID: 3904603
8. Handelsman J. (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68: 669-685. PMID: 15590779
9. Grimes DJ, Atwell RW, Brayton PR, Palmer LM, Rollins DM, et al. (1986) The fate of enteric pathogenic bacteria in estuarine and marine environments. Microbiol Sci 3: 324-329. PMID: 2856614
10. Harwood VJ, Levine AD, Scott TM, Chivukula V, Lukasik J, et al. (2005) Validity of the indicator organism paradigm for pathogen reduction in reclaimed water and public health protection. Applied and Environmental Microbiology 71: 3163-3170. PMID: 15933017
11. Goldstein ST, Juranek DD, Ravenholt O, Hightower AW, Martin DG, et al. (1996) Cryptosporidiosis: an outbreak associated with drinking water despite state-of-the-art water treatment. Ann Internal Med 24: 459-468.
12. Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, et al. (2014) Bacterial community structure is indicative of chemical inputs in the Upper Mississippi River. Front Microbiol 5: 524. doi: 10.3389/fmicb.2014.00524 PMID: 25339945
13. Özdemir V. (2013) OMICS 2.0: a practice turn for 21(st) century science and society. OMICS 17: 1-4. doi: 10.1089/omi.2012.0111 PMID: 23301640
14. Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304(5667): 66-74. PMID: 15001713
15. Miller RR, Montoya V, Gardy JL, Patrick DM, Tang P. (2013) Metagenomics for pathogen detection in public health. Genome Med 5(9): 81. doi: 10.1186/gm485 PMID: 24050114
16. Akondi KB, Lakshmi VV. (2013) Emerging trends in genomic approaches for microbial bioprospecting. OMICS 17(2): 61-70. doi: 10.1089/omi.2012.0082 PMID: 23308385
17. Chow CE, Winget DM, White RA 3rd, Hallam SJ, Suttle CA. (2015) Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions. Front Microbiol 6: 265. doi: 10.3389/fmicb.2015.00265 PMID: 25914678
18. Handelsman J, Rondon RM, Brady SF, Clardy J, Goodman RM (1998) Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem Biol 5: R245-R249. PMID: 9818143
19. Pace NR, Stahl DA, Lane DJ, Olsen GJ (1985) Analyzing natural microbial populations by rRNA sequences. ASM News 51: 4-12.
20. Jin H, Li B, Peng X, Chen L (2014) Metagenomic analyses reveal phylogenetic diversity of carboxypeptidase gene sequences in activated sludge of a wastewater treatment plant in Shanghai, China. Ann Microbiol 64: 689-697. PMID: 24860282
21. Fancello L, Trape S, Robert C, Boyer M, Popgeorgiev N, et al. (2013) Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara. ISME J 7: 359-369. doi: 10.1038/ismej.2012.101 PMID: 23038177
22. Tomaru A, Kawachi M, Demura M, Fukuyo Y (2014) Changes in microbial communities, including both uncultured and culturable bacteria, with mid-ocean ballast-water exchange during a voyage from Japan to Australia. PLoS One 9: e96274. doi: 10.1371/journal.pone.0096274 PMID: 24817212
23. Port JA, Cullen AC, Wallace JC, Smith MN, Faustman EM (2014) Metagenomic frameworks for monitoring antibiotic resistance in aquatic environments. Environ Health Perspect 122: 222-228. doi: 10.1289/ehp.1307009 PMID: 24334622
24. Yearley S (2004) Making sense of science: Understanding the social study of science. London: Sage.
25. Haffeld J, Siem H (2013) The Post-2015 Agenda: Complexity theory-based governance of the global health system in the era of postgenomics and personalized medicine. Curr Pharmacogenomics Person Med 11: 309-311.
26. Dove ES, Özdemir V (2014) The epiknowledge of socially responsible innovation. EMBO Reports 15: 462-463. doi: 10.1002/embr.201438683 PMID: 24795460
27. Zhao F1, Chen Y, Ge S, Yu X, Shao S, et al. (2014) A quantitative analysis of the mass media coverage of genomics medicine in china: a call for science journalism in the developing world. OMICS 18(4): 222-230. doi: 10.1089/omi.2013.0108 PMID: 24512309
28. Özdemir V. (2014) Personalized medicine across disciplines and without borders. Per Med 18: 687-691. Available: http://www.futuremedicine.com/doi/pdf/10.2217/pme.14.70
29. Özdemir V, Faris J, Srivastava S. (2015) Crowdfunding 2.0: The next generation philanthropy. EMBO Rep 16(3): 267-271. doi: 10.15252/embr.201439548 PMID: 25656538
30. Özdemir V, Faraj SA, Knoppers BM. (2011) Steering vaccinomics innovations with anticipatory governance and participatory foresight. OMICS 15: 637-646. doi: 10.1089/omi.2011.0087 PMID: 21848419
31. Collingridge D. (1980) The Social Control of Technology. New York: St. Martin's Press.
32. Dandara C, Huzair F, Borda-Rodriguez A, Chirikure S, Okpechi I, et al. (2014) H3Africa and the African Life Sciences Ecosystem: Building Sustainable Innovation. OMICS 18: 733-739. doi: 10.1089/omi.2014.0145 PMID: 25454511
33. Rowe G, Wright G (1999) The Delphi technique as a forecasting tool: issues and analysis. International Journal of Forecasting 15: 353-375.
34. Beech B (1997) Studying the future: a Delphi survey of how multi-disciplinary clinical staff view the likely development of two community mental health centres over the course of the next two years. J Adv Nurs 25: 331-338. PMID: 9044008
35. Delbecq AL, Van de Ven AH, Gustafson DH (1975) Group techniques for program planning: a guide to nominal group and Delphi processes. Glenview, Ill.: Scott, Foresman.
36. Green B, Jones M, Hughes D, Williams A (1999) Applying the Delphi technique in a study of GPs' information requirements. Health & Social Care in the Community 7: 198-205. PMID: 11560634
37. Hoover RS, Koerber AL (2011) Using NVivo to Answer the Challenges of Qualitative Research in Professional Communication: Benefits and Best Practices Tutorial. IEEE Transactions on Professional Communication 54: 68-82.
38. Mead D, Moseley L (2001) The use of the Delphi as a research approach. Nurse Researcher 8: 4-23.
39. Wicks P, Vaughan TE, Massagli MP, Heywood J (2011) Accelerated clinical discovery using self-reported patient data collected online and a patient-matching algorithm. Nat Biotechnol 29: 411-414. doi: 10.1038/nbt.1837 PMID: 21516084
40. Birch K, Tyfield D. (2013) Theorizing the Bioeconomy: Biovalue, Biocapital, Bioeconomics or...What? Science Technol Human Values 38: 299-327.
41. Thoreau F, Delvenne P. (2012). Have STS fallen into a political void? Depoliticisation and engagement in the case of nanotechnologies. Politica Sociedade 11: 205-226.
42. Zizek S. (2011) Current affairs. Interview with Charlie Rose. 16 October 2011.
43. Tutton R, Prainsack B. (2011) Enterprising or altruistic selves? Making up research subjects in genetics research. Sociol Health Illn 33: 1081-1095. doi: 10.1111/j.1467-9566.2011.01348.x PMID: 21507012
44. Dove ES (2013) Questioning the governance of pharmacogenomics and personalized medicine for global health. Curr Pharmacogenomics Person Med 11: 253-256
45. Rose N. (2013) The human sciences in a biological age. Theory Culture Soc 30: 3-34.
46. Sarewitz D, Guston DH (2002) Real-time technology assessment. Technol Soc 24: 93-109.
47. Guston DH. (2012) The pumpkin or the tiger? Michael Polanyi, Frederick Soddy, and anticipating emerging technologies. Minerva 50: 363-379. PMID: 23024398
48. De Vries R (2004) How can we help? From 'sociology in' bioethics to 'sociology of' bioethics. Journal of Law, Medicine and Ethics 32: 279-292. PMID: 15301193
49. Fisher E. (2011) Editorial overview: public science and technology scholars: engaging whom? Sci Eng Ethics 17: 607-620. doi: 10.1007/s11948-011-9331-x PMID: 22113233
50. Petersen A. (2013) From bioethics to a sociology of bio-knowledge. Soc Sci Med 98: 264-270. doi: 10.1016/j.socscimed.2012.12.030 PMID: 23434118
51. Özdemir V, KiliçH,Yildirim A, Vayena E, Dove ES, Gungor K, et al. (2015) A code of ethics for ethicists: What would Pierre Bourdieu say? "Do not misuse social capital in the age of consortia ethics." Am J Bioethics 15: 64-67.
52. Özdemir V. (2014) Public health in the age of genomics, 'Big Data' and massively collaborative global science. In: Routledge Handbook of Global Public Health in Asia. Edited by Griffith SM, Tang JL, Yeoh EK. Hong Kong: Routledge. doi: 10.4324/9781315818719.ch6
53. Ngueng Feze I, Prystajecky N, Cook C, Kirby E, Knoppers BM, Özdemir V, et al. (2014). The regulation of water quality assessment biotechnologies: Is Canada ready to surf the next wave? Journal of Environmental Law and Practice 26: 201-248.
54. Cook C, Prystajecky N, Ngueng Feze I, Joly Y, Dunn G, Kirby E, et al. (2013). Comparison of the regulatory framework governing microbial testing of drinking water quality in three Canadian provinces. Canadian Water Resource Journal 38(3): 185-195.
55. Dove ES, Özdemir V. (2013) All the postgenomic world is a stage: the actors and narrators required for translating pharmacogenomics into public health. Per Med 10: 213-216. PMID: 24795761
56. Ostrom E. (1990) Governing the Commons: The Evolution of Institutions for Collective Action. Cambridge, United Kingdom: Cambridge University Press.
57. Ostrom E. (1999) Coping with tragedies of the commons. Annual Review of Political Science 2: 493-535.
58. Özdemir V, Burke W, Knoppers BM, Khoury MJ, Zimmern R. (2015) Genomics and public health. In: Oxford Textbook of Global Public Health. Sixth edition. Edited by Roger Detels, Martin Gulliford, Quarraisha Abdool Karim and Chorh Chuan Tan. Oxford: Oxford University Press. Available: http://oxfordindex.oup.com/view/10.1093/med/9780199661756.003.0010
59. Özdemir V, Dove ES, Srivastava S. (2015) Will proteins have a social life at last? "Push" and "Pull" factors and Ajna Chakra for social innovation. Nature India (forthcoming).
60. th. Available: http://www.theguardian.com/science/political-science/2013/apr/08/lessons-science-advice
61. Özdemir V, Endrenyi L, Aynacioʇlu S, Bragazzi NL, Dandara C, Dove ES, et al. (2014) Bernard Lerer: recipient of the 2014 inaugural Werner Kalow Responsible Innovation Prize in Global Omics and Personalized Medicine (Pacific Rim Association for Clinical Pharmacogenetics). OMICS 18(4): 211-221. doi: 10.1089/omi.2014.0029 PMID: 24649998
62. Hekim N, Coşkun Y, Sinav A, Abou-Zeid AH, Aʇirbaşli M, Akintola SO, et al. (2014) Translating biotechnology to knowledge-based innovation, peace, and development? Deploy a Science Peace Corps - an open letter to world leaders. OMICS 18(7): 415-420. doi: 10.1089/omi.2014.0079 PMID: 24955641
63. Rajan KS. (2006). Biocapital: The Constitution of Postgenomic Life. Durham, NC: Duke University Press.
64. Christophe Bonneuil, Foyer J, Wynne B. (2014) Genetic fallout in biocultural landscapes: molecular imperialism and the cultural politics of (not) seeing transgenes in Mexico. Soc Stud Sci 44(6): 901-929. PMID: 25608443
65. Özdemir V, Kolker E, Hotez PJ, Mohin S, Prainsack B, Wynne B, et al. Ready to put metadata on the post-2015 development agenda? Linking data publications to responsible innovation and science diplomacy. OMICS 2014; 18(1): 1-9. doi: 10.1089/omi.2013.0170 PMID: 24456464
66. Taylor-Alexander S, Schwartz-Marín E. Bioprophecy and the politics of the present: notes on the establishment of Mexico's national genomics institute (INMEGEN). New Genet Soc 32: 333-349.
67. Calvert J. Systems biology, big science and grand challenges. BioSocieties 2013; 8: 466-479.