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Volumn 769, Issue , 2012, Pages 10-25

Evolution of simple sequence repeats as mutable sites

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA REPLICATION; DNA SEQUENCE; EVOLUTIONARY ADAPTATION; GENETIC CONSERVATION; GENETIC DRIFT; GENETIC VARIABILITY; GENOMIC INSTABILITY; HUMAN; MUTATION; MUTATION RATE; NATURAL SELECTION; NERVOUS SYSTEM DEVELOPMENT; NEUROLOGIC DISEASE; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PHENOTYPIC VARIATION; PRIORITY JOURNAL; SIMPLE SEQUENCE REPEAT; TRANSPOSON; BIOLOGIST; NERVOUS SYSTEM FUNCTION;

EID: 84934439952     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4614-5434-2_2     Document Type: Article
Times cited : (31)

References (61)
  • 1
    • 37049177700 scopus 로고
    • The puzzle of the triplet repeats
    • Morell V. The puzzle of the triplet repeats. Science 1993; 260:1422-1423.
    • (1993) Science , vol.260 , pp. 1422-1423
    • Morell, V.1
  • 2
    • 0021707651 scopus 로고
    • Enhanced gene expression by the poly(dT-dG) -poly(dC-dA) sequence
    • Hamada H, Seidman M, Howard BH et al. Enhanced gene expression by the poly(dT-dG) -poly(dC-dA) sequence. Mol Cellular Biol 1984; 4:2622-2630.
    • (1984) Mol Cellular Biol , vol.4 , pp. 2622-2630
    • Hamada, H.1    Seidman, M.2    Howard, B.H.3
  • 3
    • 23444458415 scopus 로고
    • Transcriptional activation modulated by homopolymeric glutamine and proline stretches
    • Gerber HP, Seipel K, Georgiev O et al. Transcriptional activation modulated by homopolymeric glutamine and proline stretches. Science 1994; 263:808-811.
    • (1994) Science , vol.263 , pp. 808-811
    • Gerber, H.P.1    Seipel, K.2    Georgiev, O.3
  • 4
    • 84934442404 scopus 로고
    • Simple sequence repeats as a source of quantitative genetic variation
    • Kashi Y, King DG, Soller M. Simple sequence repeats as a source of quantitative genetic variation. Trends Genet 1991; 13:14-18.
    • (1991) Trends Genet , vol.13 , pp. 14-18
    • Kashi, Y.1    King, D.G.2    Soller, M.3
  • 5
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: Structure, function and evolution
    • Li YC, Korol AB, Fahima T et al. Microsatellites within genes: Structure, function and evolution. Mol BiolEvol 2004; 21:991-1001.
    • (2004) Mol BiolEvol , vol.21 , pp. 991-1001
    • Li, Y.C.1    Korol, A.B.2    Fahima, T.3
  • 6
    • 77952700703 scopus 로고    scopus 로고
    • Conservation of human microsatellites across 450 million years of evolution
    • Buschiazzo E, Gemmel NJ. Conservation of Human Microsatellites across 450 Million Years of Evolution. Genome Biol Evol 2010; 2:153-165.
    • (2010) Genome Biol Evol , vol.2 , pp. 153-165
    • Buschiazzo, E.1    Gemmel, N.J.2
  • 7
    • 78649621919 scopus 로고    scopus 로고
    • Simple sequence repeat variation in the Daphnia pulex genome
    • doi:10.1186/1411-2164-11-691
    • Sung W, Tucker A, Bergeron DR et al. Simple sequence repeat variation in the Daphnia pulex genome. BMC Genomics 2010; 11:691. doi:10.1186/1411-2164-11- 691.
    • (2010) BMC Genomics , vol.11 , pp. 691
    • Sung, W.1    Tucker, A.2    Bergeron, D.R.3
  • 8
    • 0003668973 scopus 로고
    • Facsimile edition by Harvard University Press, Cambridge, Massachusetts
    • Darwin CR. On the Origin of Species by Means of Natural Selection. London: John Murray, 1859:131 (Facsimile edition by Harvard University Press, Cambridge, Massachusetts, 1964).
    • (1859) On the Origin of Species by Means of Natural Selection , pp. 131
    • Darwin, C.R.1
  • 9
    • 37049193721 scopus 로고
    • The origin of species by mutation
    • de Vries H. The origin of species by mutation. Science 1902; 15:121-129.
    • (1902) Science , vol.15 , pp. 121-129
    • De Vries, H.1
  • 10
    • 0007565394 scopus 로고
    • Specific modifiers ofeosin eye color in Drosophilamelanogaster
    • Bridges CB. Specific modifiers ofeosin eye color in Drosophilamelanogaster. J Exp Zool 1919;28:337-384. II. Sturtevant AH. Essays on evolution. I. On the effects of selection on mutation rate. Q Rev Biol 1931; 12:464-461.
    • (1919) J Exp Zool , vol.28 , pp. 337-384
    • Bridges, C.B.1
  • 12
    • 0034542564 scopus 로고    scopus 로고
    • The evolution of mutation rates: Separating causes from consequences
    • Sniegowski PD, Gerrish PJ, Johnson T et al. The evolution of mutation rates: separating causes from consequences. BioEssays 2000; 22:1051-1066.
    • (2000) BioEssays , vol.22 , pp. 1051-1066
    • Sniegowski, P.D.1    Gerrish, P.J.2    Johnson, T.3
  • 13
    • 34447564992 scopus 로고    scopus 로고
    • Mutation rate variation in multicellular eukaryotes: Causes and consequences
    • Baer CF, Miyamoto MM, Denver DR. Mutation rate variation in multicellular eukaryotes: causes and consequences. Nature Rev Genet 2001; 8:619-631.
    • (2001) Nature Rev Genet , vol.8 , pp. 619-631
    • Baer, C.F.1    Miyamoto, M.M.2    Denver, D.R.3
  • 15
    • 66049095706 scopus 로고    scopus 로고
    • One hundred fifty years without Darwin are enough!
    • Ayala FJ. One hundred fifty years without Darwin are enough! Genome Res2009; 19:693-699.
    • (2009) Genome Res , vol.19 , pp. 693-699
    • Ayala, F.J.1
  • 16
    • 84934434471 scopus 로고
    • A diagram of evolution
    • Darlington CD. A diagram of evolution. Nature 1918; 216:441-452.
    • (1918) Nature , vol.216 , pp. 441-452
    • Darlington, C.D.1
  • 17
    • 0002515156 scopus 로고
    • Teleology
    • Keller EF, Lloyd EA, eds. Cambridge, Massachusetts: Harvard University Press
    • Lennox JG. Teleology. In: Keller EF, Lloyd EA, eds. Keywords in Evolutionary Biology. Cambridge, Massachusetts: Harvard University Press, 1992:324-333.
    • (1992) Keywords in Evolutionary Biology , pp. 324-333
    • Lennox, J.G.1
  • 18
    • 0019989720 scopus 로고
    • Darwinism and the expansion of evolutionary theory
    • Gould SJ. Darwinism and the expansion of evolutionary theory. Science 1982; 216:380-381.
    • (1982) Science , vol.216 , pp. 380-381
    • Gould, S.J.1
  • 20
    • 0037358947 scopus 로고    scopus 로고
    • What fraction of mutations reduces fitness?
    • Shaw RG, Shaw FH, Geyer C. What fraction of mutations reduces fitness? Evolution 2003; 57:686-689.
    • (2003) Evolution , vol.57 , pp. 686-689
    • Shaw, R.G.1    Shaw, F.H.2    Geyer, C.3
  • 21
    • 45249101153 scopus 로고    scopus 로고
    • Why are sex and recombination so common?
    • Hadany L, Comeron JM. Why are sex and recombination so common? Ann NY Acad Sci 2008; 1133:26-43.
    • (2008) Ann NY Acad Sci , vol.1133 , pp. 26-43
    • Hadany, L.1    Comeron, J.M.2
  • 22
    • 0004039907 scopus 로고    scopus 로고
    • 3rd Ed. Sunderland Massachusetts: Sinauer Associates
    • Futuyma DJ. Evolutionary Biology, 3rd ed. Sunderland, Massachusetts: Sinauer Associates, 1998: 169.
    • (1998) Evolutionary Biology , pp. 169
    • Futuyma, D.J.1
  • 23
    • 33846601376 scopus 로고    scopus 로고
    • Implicit information in eukaryotic pathogens as the basis of antigenic variation
    • Caporale LH, ed. Oxford: Oxford University Press
    • Barry JD. Implicit information in eukaryotic pathogens as the basis of antigenic variation. In: Caporale LH, ed. The Implicit Genome. Oxford: Oxford University Press, 2006:91-106.
    • (2006) The Implicit Genome , pp. 91-106
    • Barry, J.D.1
  • 24
    • 33750690617 scopus 로고    scopus 로고
    • Repeats and variation in pathogen selection
    • Caporale LH, ed. Oxford: Oxford University Press
    • Bayliss CD, Moxon ER. Repeats and variation in pathogen selection. In: Caporale LH, ed. The Implicit Genome. Oxford: Oxford University Press, 2006:54-16.
    • (2006) The Implicit Genome , pp. 54-16
    • Bayliss, C.D.1    Moxon, E.R.2
  • 25
    • 20644448214 scopus 로고    scopus 로고
    • Gene products with evolutionary functions
    • Arber W. Gene products with evolutionary functions. Proteomics 2005; 5:2280-2284.
    • (2005) Proteomics , vol.5 , pp. 2280-2284
    • Arber, W.1
  • 26
    • 35349012160 scopus 로고    scopus 로고
    • Mutation rate variation in eukaryotes: Evolutionary implications of site-specific mechanisms
    • doi:10.1038/nrg2158-c1
    • King DG, Kashi Y. Mutation rate variation in eukaryotes: evolutionary implications of site-specific mechanisms. Nature Rev Genet 2001; 8. doi:10.1038/nrg2158-c1.
    • (2001) Nature Rev Genet , vol.8
    • King, D.G.1    Kashi, Y.2
  • 27
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: Simple sequences with complex evolution
    • Ellegren H. Microsatellites: Simple sequences with complex evolution. Nat Rev Genet 2004; 5:435-445.
    • (2004) Nat Rev Genet , vol.5 , pp. 435-445
    • Ellegren, H.1
  • 28
    • 65249089637 scopus 로고    scopus 로고
    • Local DNA topography correlates with functional noncoding regions of the human genome
    • Parker SCJ, Hansen L, Abaan HO et al. Local DNA topography correlates with functional noncoding regions of the human genome. Science 2009; 324:389-392.
    • (2009) Science , vol.324 , pp. 389-392
    • Scj, P.1    Hansen, L.2    Abaan, H.O.3
  • 29
    • 0024334889 scopus 로고
    • The multiple codes of nucleotide sequences
    • Trifonov EN. The multiple codes of nucleotide sequences. Bull Math Biol 1989; 51:411-432.
    • (1989) Bull Math Biol , vol.51 , pp. 411-432
    • Trifonov, E.N.1
  • 31
    • 33646156702 scopus 로고    scopus 로고
    • An engineering perspective: The implicit protocols
    • Caporale LH, ed. Oxford: Oxford University Press
    • Doyle J, Csete M, Caporale L. An engineering perspective: The implicit protocols. In: Caporale LH, ed. The Implicit Genome. Oxford: Oxford University Press, 2006:294-298.
    • (2006) The Implicit Genome , pp. 294-298
    • Doyle, J.1    Csete, M.2    Caporale, L.3
  • 33
    • 0014089172 scopus 로고
    • Theory of fitness in a heterogeneous environment. VI. the adaptive significance of mutation
    • Levins R. Theory of fitness in a heterogeneous environment. VI. The adaptive significance of mutation. Genetics 1961; 56:163-118.
    • (1961) Genetics , vol.56 , pp. 163-118
    • Levins, R.1
  • 35
    • 0031714655 scopus 로고    scopus 로고
    • The population genetics of adaptation: The distribution of factors fixed during adaptive evolution
    • Orr HA. The population genetics of adaptation: The distribution of factors fixed during adaptive evolution. Evolution 1998; 52:935-949.
    • (1998) Evolution , vol.52 , pp. 935-949
    • Orr, H.A.1
  • 36
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • Kashi Y, King DG. Simple sequence repeats as advantageous mutators in evolution. Trends Genet 2006; 22:253-259.
    • (2006) Trends Genet , vol.22 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 37
    • 33748917565 scopus 로고    scopus 로고
    • The period gene Thr-Gly polymorphism in Australian and African Drosophila melanogaster populations: Implications for selection
    • Sawyer LA, Sandrelli F, Pasetto C et al. The period gene Thr-Gly polymorphism in Australian and African Drosophila melanogaster populations: Implications for selection. Genetics 2006; 114:465-480.
    • (2006) Genetics , vol.114 , pp. 465-480
    • Sawyer, L.A.1    Sandrelli, F.2    Pasetto, C.3
  • 38
    • 84881447433 scopus 로고    scopus 로고
    • Polyglutamine variation in a flowering time protein correlates with island age in a Hawaiian plant radiation
    • doi:10.1186/1411-2148-1-105
    • Lindqvist C, Laakkonen L, Albert VA. Polyglutamine variation in a flowering time protein correlates with island age in a Hawaiian plant radiation. BMC Evol Biol 2001; 1:105. doi:10.1186/1411-2148-1-105.
    • (2001) BMC Evol Biol , vol.1 , pp. 105
    • Lindqvist, C.1    Laakkonen, L.2    Albert, V.A.3
  • 39
    • 84934443697 scopus 로고    scopus 로고
    • Avian Clock gene polymorphism: Evidence for a latitudinal cline in allele frequencies
    • V. Johnsen A, Fidler AE, Kuhn S et al. Avian Clock gene polymorphism: evidence for a latitudinal cline in allele frequencies. Mol Ecol 2001; 16:4861-4880.
    • (2001) Mol Ecol , vol.16 , pp. 4861-4880
    • Johnsen, A.V.1    Fidler, A.E.2    Kuhn, S.3
  • 40
    • 66349113764 scopus 로고    scopus 로고
    • Unstable tandem repeats in promoters confer transcriptional evolvability
    • Vinces MD, Legendre M, Caldara M et al. Unstable tandem repeats in promoters confer transcriptional evolvability. Science 2009; 324:1213-1216.
    • (2009) Science , vol.324 , pp. 1213-1216
    • Vinces, M.D.1    Legendre, M.2    Caldara, M.3
  • 41
    • 0001779824 scopus 로고    scopus 로고
    • Variation and fidelity: The evolution of simple sequence repeats as functional elements in adjustable genes
    • Wasser SP, ed. Dordrecht: Kluwer Academic Publishers
    • King DG, Soller M. Variation and fidelity: The evolution of simple sequence repeats as functional elements in adjustable genes. In: Wasser SP, ed. Evolutionary Theory and Processes: Modern Perspectives. Dordrecht: Kluwer Academic Publishers, 1999:65-82.
    • (1999) Evolutionary Theory and Processes: Modern Perspectives , pp. 65-82
    • King, D.G.1    Soller, M.2
  • 42
    • 33646128079 scopus 로고    scopus 로고
    • Tuning knobs in the genome: Evolution of simple sequence repeats by indirect selection
    • Caporale LH, ed. Oxford: Oxford University Press
    • King DG, Trifonov EN, Kashi Y. Tuning knobs in the genome: Evolution of simple sequence repeats by indirect selection. In: Caporale LH, ed. The Implicit Genome. Oxford: Oxford University Press, 2006:11-90.
    • (2006) The Implicit Genome , pp. 11-90
    • King, D.G.1    Trifonov, E.N.2    Kashi, Y.3
  • 43
    • 35549000153 scopus 로고    scopus 로고
    • Has simple sequence repeat mutability been selected to facilitate evolution?
    • Kashi Y, King DG. Has simple sequence repeat mutability been selected to facilitate evolution? Isr J Ecol Evol 2006; 52:331-342.
    • (2006) Isr J Ecol Evol , vol.52 , pp. 331-342
    • Kashi, Y.1    King, D.G.2
  • 44
    • 34547208016 scopus 로고    scopus 로고
    • Indirect selection for mutability
    • King DG, Kashi Y. Indirect selection for mutability. Heredity 2001; 99:123-124.
    • (2001) Heredity , vol.99 , pp. 123-124
    • King, D.G.1    Kashi, Y.2
  • 45
    • 33749991391 scopus 로고    scopus 로고
    • The rise, fall and renaissance of microsatellites in eukaryotic genomes
    • Buschiazzo E, Gemmel NJ. The rise, fall and renaissance of microsatellites in eukaryotic genomes. BioEssays 2006; 28:1040-1050.
    • (2006) BioEssays , vol.28 , pp. 1040-1050
    • Buschiazzo, E.1    Gemmel, N.J.2
  • 46
    • 84934438637 scopus 로고    scopus 로고
    • Insertions, substitutions, and the origin of microsatellites
    • Zhu Y, Strassmann JE, Queller DC. Insertions, substitutions, and the origin of microsatellites. Genet Res Camb 2000; 16:221-236.
    • (2000) Genet Res Camb , vol.16 , pp. 221-236
    • Zhu, Y.1    Strassmann, J.E.2    Queller, D.C.3
  • 47
    • 38449084519 scopus 로고    scopus 로고
    • Repetitive sequences in complex genomes: Structure and evolution
    • Jurka J, Kapitonov VV, Kohany O et al. Repetitive sequences in complex genomes: Structure and evolution. Annu Rev Genomics Hum Genet 2001; 8:241-259.
    • (2001) Annu Rev Genomics Hum Genet , vol.8 , pp. 241-259
    • Jurka, J.1    Kapitonov, V.V.2    Kohany, O.3
  • 48
    • 70349339300 scopus 로고    scopus 로고
    • Transposable elements: Powerful facilitators of evolution
    • Oliver KR, Green WK. Transposable elements: powerful facilitators of evolution. BioEssays 2009; 31:103-114.
    • (2009) BioEssays , vol.31 , pp. 103-114
    • Oliver, K.R.1    Green, W.K.2
  • 49
    • 77958483312 scopus 로고    scopus 로고
    • What is a microsatellite: A computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats
    • Kelkar YD, Strubczewski N, Hile SE et al. What is a microsatellite: A computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats. Genome Biol Evol 2010; 2:620-635.
    • (2010) Genome Biol Evol , vol.2 , pp. 620-635
    • Kelkar, Y.D.1    Strubczewski, N.2    Hile, S.E.3
  • 50
    • 84934439811 scopus 로고    scopus 로고
    • Cross-species transfer of nuclear microsatellite markers: Potential and limitations
    • Barbara T, Palma-Silva C, Paggi GM et al. Cross-species transfer of nuclear microsatellite markers: potential and limitations. Molec Ecol 2001; 16:3159-3161.
    • (2001) Molec Ecol , vol.16 , pp. 3159-3161
    • Barbara, T.1    Palma-Silva, C.2    Paggi, G.M.3
  • 51
    • 56949108250 scopus 로고    scopus 로고
    • Embryonic nervous system genes predominate in searches for dinucleotide simple sequence repeats flanked by conserved sequences
    • Riley DE, Krieger JN. Embryonic nervous system genes predominate in searches for dinucleotide simple sequence repeats flanked by conserved sequences. Gene 2009; 429:74-79.
    • (2009) Gene , vol.429 , pp. 74-79
    • Riley, D.E.1    Krieger, J.N.2
  • 52
    • 56949101938 scopus 로고    scopus 로고
    • UTR dinucleotide simple sequence repeat evolution exhibits recurring patterns including regulatory sequence motif replacements
    • Riley DE, Krieger JN. UTR dinucleotide simple sequence repeat evolution exhibits recurring patterns including regulatory sequence motif replacements. Gene 2009; 429:80-86.
    • (2009) Gene , vol.429 , pp. 80-86
    • Riley, D.E.1    Krieger, J.N.2
  • 53
    • 45849092558 scopus 로고    scopus 로고
    • Simple sequence repeats: Genetic modulators of brain function and behavior
    • Fondon JW, Hammock EAD, Hannan A et al. Simple sequence repeats: Genetic modulators of brain function and behavior. Trends Neurosci 2008; 31:328-334.
    • (2008) Trends Neurosci , vol.31 , pp. 328-334
    • Fondon, J.W.1    Ead, H.2    Hannan, A.3
  • 54
    • 0029983147 scopus 로고    scopus 로고
    • Trinucleotide repeats and long homopeptides in genes and proteins associated with nervous system disease and development
    • Karlin S, Burge C. Trinucleotide repeats and long homopeptides in genes and proteins associated with nervous system disease and development. Proc Natl Acad Sci USA 1996; 93:1560-1565.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 1560-1565
    • Karlin, S.1    Burge, C.2
  • 55
    • 19544378829 scopus 로고    scopus 로고
    • Simple sequence in brain and nervous system specific proteins
    • Huntley MA, Mahmood S, Golding BG. Simple sequence in brain and nervous system specific proteins. Genome 2005; 48:291-301.
    • (2005) Genome , vol.48 , pp. 291-301
    • Huntley, M.A.1    Mahmood, S.2    Golding, B.G.3
  • 56
    • 77954709238 scopus 로고    scopus 로고
    • Single amino acid repeats in signal peptides
    • Labaj PP, Leparc GG, Bardet AF et al. Single amino acid repeats in signal peptides. FEBS Journal 2010; 211:3141-3151.
    • (2010) FEBS Journal , vol.211 , pp. 3141-3151
    • Labaj, P.P.1    Leparc, G.G.2    Bardet, A.F.3
  • 57
    • 37549010337 scopus 로고    scopus 로고
    • Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species
    • Huntley MA, Clark AG. Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species. Mol Biol Evol 2001; 24:2598-2609.
    • (2001) Mol Biol Evol , vol.24 , pp. 2598-2609
    • Huntley, M.A.1    Clark, A.G.2
  • 58
    • 77954883554 scopus 로고    scopus 로고
    • Length polymorphism and head shape association among genes with polyglutamine repeats in the stalk-eyed fly, Teleopsis dalmanni
    • doi:10.1186/1411-2148-10-221
    • Birge LM, Pitts ML, Baker RH et al. Length polymorphism and head shape association among genes with polyglutamine repeats in the stalk-eyed fly, Teleopsis dalmanni. BMC Evol Biol 2010; 10:227. doi:10.1186/1411-2148-10-221.
    • (2010) BMC Evol Biol , vol.10 , pp. 227
    • Birge, L.M.1    Pitts, M.L.2    Baker, R.H.3
  • 59
    • 0042819915 scopus 로고    scopus 로고
    • Intrinsically unstructured proteins evolve by repeat expansion
    • Tompa P. Intrinsically unstructured proteins evolve by repeat expansion. BioEssays 2003; 25:841-855.
    • (2003) BioEssays , vol.25 , pp. 841-855
    • Tompa, P.1
  • 60
    • 56849099636 scopus 로고    scopus 로고
    • Prion switching in response to environmental stress
    • doi:10.1311/journal.pbio.0060294
    • Tyedmers J, Madariaga ML, Lindquist S. Prion switching in response to environmental stress. PLoS Biol 2008; 6(11): e294. doi:10.1311/journal.pbio. 0060294.
    • (2008) PLoS Biol , vol.6 , Issue.11
    • Tyedmers, J.1    Madariaga, M.L.2    Lindquist, S.3


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