메뉴 건너뛰기




Volumn 1123, Issue , 2014, Pages 37-53

PCR-Based bioprospecting for homing endonucleases in fungal mitochondrial rRNA genes

Author keywords

Biotechnology; Data mining; Endonuclease assays; Homing endonucleases; Protein purification

Indexed keywords

ENDONUCLEASE; HOMING ENDONUCLEASE; MITOCHONDRIAL RNA; UNCLASSIFIED DRUG;

EID: 84934439535     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-968-0_3     Document Type: Article
Times cited : (6)

References (37)
  • 1
    • 0029066770 scopus 로고
    • Structure and activities of group II introns
    • Michel F, Ferat JL (1995) Structure and activities of group II introns. Annu Rev Biochem 64:435-461
    • (1995) Annu Rev Biochem , vol.64 , pp. 435-461
    • Michel, F.1    Ferat, J.L.2
  • 2
    • 0034910710 scopus 로고    scopus 로고
    • Coevolution of the group II intron RNA structure with its intron-encoded reverse transcriptase
    • Toor N, Hausner G, Zimmerly S (2001) Coevolution of the group II intron RNA structure with its intron-encoded reverse transcriptase. RNA 7:1142-1152
    • (2001) RNA , vol.7 , pp. 1142-1152
    • Toor, N.1    Hausner, G.2    Zimmerly, S.3
  • 4
    • 85158033913 scopus 로고    scopus 로고
    • Mobile introns: Pathways and proteins
    • Craig NL, Craigie R, Gellert M, Lambowitz AM (eds ASM Press, Washington DC
    • Belfort M, Derbyshire V, Parker MM, Cousineau B, Lambowitz AM (2002) Mobile introns: Pathways and proteins. In: Craig NL, Craigie R, Gellert M, Lambowitz AM (eds) Mobile DNA II. ASM Press, Washington, DC, pp 761-783
    • (2002) Mobile DNA II , pp. 761-783
    • Belfort, M.1    Derbyshire, V.2    Parker, M.M.3    Cousineau, B.4    Lambowitz, A.M.5
  • 5
    • 77956046534 scopus 로고    scopus 로고
    • A group ii intron encodes a functional laglidadg homing endonuclease and self-splices under moderate temperature and ionic conditions
    • Mullineux ST, Costa M, Bassi GS, Michel F, Hausner G (2010) A group II intron encodes a functional LAGLIDADG homing endonuclease and self-splices under moderate temperature and ionic conditions. RNA 16:1818-1831
    • (2010) RNA , vol.16 , pp. 1818-1831
    • Mullineux, S.T.1    Costa, M.2    Bassi, G.S.3    Michel, F.4    Hausner, G.5
  • 7
    • 78651240053 scopus 로고    scopus 로고
    • Homing endonucleases: From microbial genetic invaders to reagents for targeted DNA modifi cation
    • Stoddard BL (2011) Homing endonucleases: From microbial genetic invaders to reagents for targeted DNA modifi cation. Structure 19:7-15
    • (2011) Structure , vol.19 , pp. 7-15
    • Stoddard, B.L.1
  • 8
    • 84865272073 scopus 로고    scopus 로고
    • Homing endonucleases: DNA scissors on a mission
    • Hafez M, Hausner G (2012) Homing endonucleases: DNA scissors on a mission. Genome 55:553-569
    • (2012) Genome , vol.55 , pp. 553-569
    • Hafez, M.1    Hausner, G.2
  • 9
    • 77957099255 scopus 로고    scopus 로고
    • Fungal mitochondrial genomes, introns and plasmids
    • Arora DK, Khachatourians GG (eds Fungal genomics Elsevier Science, New York
    • Hausner G (2003) Fungal mitochondrial genomes, introns and plasmids. In: Arora DK, Khachatourians GG (eds) Applied mycology and biotechnology, vol III, Fungal genomics. Elsevier Science, New York, pp 101-131
    • (2003) Applied Mycology and Biotechnology , vol.3 , pp. 101-131
    • Hausner, G.1
  • 10
    • 3042568753 scopus 로고    scopus 로고
    • The spread of laglidadg homing endonuclease genes in rDNA
    • Haugen P, Bhattacharya D (2004) The spread of LAGLIDADG homing endonuclease genes in rDNA. Nucleic Acids Res 32:2049-2057
    • (2004) Nucleic Acids Res , vol.32 , pp. 2049-2057
    • Haugen, P.1    Bhattacharya, D.2
  • 11
    • 70349902619 scopus 로고    scopus 로고
    • Genes-within-genes: Multiple laglidadg homing endonucleases target the ribosomal protein s3 gene encoded within a rnl group i intron of Ophiostoma and related taxa
    • Sethuraman J, Majer A, Friedrich NC, Edgell DR, Hausner G (2009) Genes-within-genes: Multiple LAGLIDADG homing endonucleases target the ribosomal protein S3 gene encoded within a rnl group I intron of Ophiostoma and related taxa. Mol Biol Evol 26:2299-2315
    • (2009) Mol Biol Evol , vol.26 , pp. 2299-2315
    • Sethuraman, J.1    Majer, A.2    Friedrich, N.C.3    Edgell, D.R.4    Hausner, G.5
  • 12
    • 80955144232 scopus 로고    scopus 로고
    • The highly variable mitochondrial small-subunit ribosomal rna gene of ophiostoma minus
    • Hafez M, Hausner G (2011) The highly variable mitochondrial small-subunit ribosomal RNA gene of Ophiostoma minus. Fungal Biol 115:1122-1137
    • (2011) Fungal Biol , vol.115 , pp. 1122-1137
    • Hafez, M.1    Hausner, G.2
  • 13
    • 33644756595 scopus 로고    scopus 로고
    • Homing endonuclease structure and function
    • Stoddard BL (2006) Homing endonuclease structure and function. Q Rev Biophys 38: 49-95
    • (2006) Q Rev Biophys , vol.38 , pp. 49-95
    • Stoddard, B.L.1
  • 17
    • 85115913704 scopus 로고    scopus 로고
    • Advances in engineering homing endonucleases for gene targeting: Ten years after structures
    • Bertolotti R, Ozawa K (eds World Scientifi c Press, Hackensack, NJ
    • Stoddard BL, Scharenberg AM, Monnat RJ Jr (2008) Advances in engineering homing endonucleases for gene targeting: Ten years after structures. In: Bertolotti R, Ozawa K (eds) Progress in gene therapy 3: Autologous and cancer stem cell gene therapy. World Scientifi c Press, Hackensack, NJ, pp 135-167
    • (2008) Progress in Gene Therapy 3: Autologous and Cancer Stem Cell Gene Therapy , pp. 135-167
    • Stoddard, B.L.1    Scharenberg, A.M.2    Monnat Jr., R.J.3
  • 19
    • 84863209279 scopus 로고    scopus 로고
    • Structural, functional and evolutionary relationships between homing endonucleases and proteins from their host organisms
    • Taylor GK, Stoddard BL (2012) Structural, functional and evolutionary relationships between homing endonucleases and proteins from their host organisms. Nucleic Acids Res 40:5189-5200
    • (2012) Nucleic Acids Res , vol.40 , pp. 5189-5200
    • Taylor, G.K.1    Stoddard, B.L.2
  • 20
    • 0000921913 scopus 로고
    • Isolation of high molecular weight DNA and double-stranded RNAs from fungi
    • Kim WK, Mauthe W, Hausner G, Klassen GR (1990) Isolation of high molecular weight DNA and double-stranded RNAs from fungi. Can J Bot 68:1898-1902
    • (1990) Can J Bot , vol.68 , pp. 1898-1902
    • Kim, W.K.1    Mauthe, W.2    Hausner, G.3    Klassen, G.R.4
  • 21
    • 0000449269 scopus 로고
    • Do galeate-ascospore members of the cephaloascaceae endomycetaceae and ophiostomataceae share a common phylogeny
    • Hausner G, Reid J, Klassen GR (1992) Do galeate-ascospore members of the Cephaloascaceae, Endomycetaceae and Ophiostomataceae share a common phylogeny Mycologia 84:870-881
    • (1992) Mycologia , vol.84 , pp. 870-881
    • Hausner, G.1    Reid, J.2    Klassen, G.R.3
  • 22
    • 0033598755 scopus 로고    scopus 로고
    • Recurrent invasion and extinction of a selfi sh gene
    • Goddard MR, Burt A (1999) Recurrent invasion and extinction of a selfi sh gene. Proc Natl Acad Sci U S A 96:13880-13885
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 13880-13885
    • Goddard, M.R.1    Burt, A.2
  • 26
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal-X windows interface: Fl exible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal-X windows interface: Fl exible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 27
    • 23144440940 scopus 로고    scopus 로고
    • Praline: A multiple sequence alignment toolbox that integrates homology-extended and structure information
    • Simossis VA, Heringa J (2005) PRALINE: A multiple sequence alignment toolbox that integrates homology-extended and structure information. Nucleic Acids Res 33:W289-W294
    • (2005) Nucleic Acids Res , vol.33 , pp. 289-294
    • Simossis, V.A.1    Heringa, J.2
  • 28
  • 29
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 31
    • 79957613599 scopus 로고    scopus 로고
    • Mega5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 32
    • 0036440550 scopus 로고    scopus 로고
    • Characterization of homing endonucleases
    • Kowalski JC, Derbyshire V (2002) Characterization of homing endonucleases. Methods 28:365-373
    • (2002) Methods , vol.28 , pp. 365-373
    • Kowalski, J.C.1    Derbyshire, V.2
  • 34
    • 3042731773 scopus 로고    scopus 로고
    • Direct colony identifi cation by PCR-miniprep
    • Dafa?alla TH, Hobom G, Zahner H (2000) Direct colony identifi cation by PCR-miniprep. Mol Biol Today 1:65-66
    • (2000) Mol Biol Today , vol.1 , pp. 65-66
    • Dafaalla, T.H.1    Hobom, G.2    Zahner, H.3
  • 35
    • 68249136795 scopus 로고    scopus 로고
    • Characterization of intein homing endonuclease encoded in the DNA polymerase gene of Thermococcus marinus
    • Bae H, Kim KP, Song JM, Kim JH, Yang JS, Kwon ST (2009) Characterization of intein homing endonuclease encoded in the DNA polymerase gene of Thermococcus marinus. FEMS Microbiol Lett 297:180-188
    • (2009) FEMS Microbiol Lett , vol.297 , pp. 180-188
    • Bae, H.1    Kim, K.P.2    Song, J.M.3    Kim, J.H.4    Yang, J.S.5    Kwon, S.T.6
  • 36
    • 0034963078 scopus 로고    scopus 로고
    • A new nomenclature of group i introns in ribosomal DNA
    • Johansen S, Haugen P (2001) A new nomenclature of group I introns in ribosomal DNA. RNA 7:935-936
    • (2001) RNA , vol.7 , pp. 935-936
    • Johansen, S.1    Haugen, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.