Implementation and application of pulsed interleaved excitation for dual-color FCS and RICS

Methods in Molecular Biology

Volumn 1076, Issue , 2014, Pages 653-682

  Hendrix, Jelle ^a   Lamb, Don C ^a,b  

^a UNIVERSITY OF MUNICH   (Germany)

^b University of Illinois at Urbana Champaign   (United States)

Author keywords

ccRICS; CLSM; Confocal laser scanning microscopy; FCCS; FCS; Fluorescence correlation spectroscopy; Fluorescence cross correlation spectroscopy; Pulsed interleaved excitation; Raster image correlation spectroscopy; RICS; Time correlated single photon counting

Indexed keywords

ARTICLE; CONFOCAL LASER MICROSCOPY; DATA ANALYSIS SOFTWARE; EXCITATION; FLUORESCENCE CORRELATION SPECTROSCOPY; FLUORESCENCE MICROSCOPE; FLUORESCENCE SPECTROSCOPY; IN VITRO STUDY; INFORMATION PROCESSING; MOLECULAR INTERACTION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; SPATIAL AUTOCORRELATION ANALYSIS;

FLUORESCENCE RESONANCE ENERGY TRANSFER; FLUORESCENT DYES; MICROSCOPY, CONFOCAL; PHOTONS; PROTEIN INTERACTION MAPPING; SPECTROMETRY, FLUORESCENCE;

EID: 84934437530     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-649-8_30     Document Type: Article

References (41)

1. Schwille P, Meyer-Almes FJ, Rigler R (1997) Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution. Biophys J 72:1878-1886
2. Digman MA, Wiseman PW, Horwitz AR, Gratton E (2009) Detecting protein complexes in living cells from laser scanning confocal image sequences by the cross correlation raster image spectroscopy method. Biophys J 96: 707-716
3. Elson EL, Magde D (1974) Fluorescence correlation spectroscopy. Conceptual basis and theory. Biopolymers 13:1-27
4. Petersen NO, Hoddelius PL, Wiseman PW, Seger O, Magnusson KE (1993) Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application. Biophys J 65:1135-1146
5. Digman MA, Sengupta P, Wiseman PW, Brown CM, Horwitz AR, Gratton E (2005) Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure. Biophys J 88:L33-L36
6. Bacia K, Petrasek Z, Schwille P (2012) Correcting for spectral cross-talk in dual-color fluorescence cross-correlation spectroscopy. Chemphyschem 13:1221-1231
7. Rigler R, Foldes-Papp Z, Meyer-Almes FJ, Sammet C, Volcker M, Schnetz A (1998) Fluorescence cross-correlation: a new concept for polymerase chain reaction. J Biotechnol 63:97-109
8. Oyama R, Takashima H, Yonezawa M, Doi N, Miyamoto-Sato E, Kinjo M, Yanagawa H (2006) Protein-protein interaction analysis by C-terminally specific fluorescence labeling and fluorescence cross-correlation spectroscopy. Nucleic Acids Res 34:e102
9. Shi X, Foo YH, Sudhaharan T, Chong S-W, Korzh V, Ahmed S, Wohland T (2009) Determination of dissociation constants in living zebrafish embryos with single wavelength fluorescence cross-correlation spectroscopy. Biophys J 97:678-686
10. Kapanidis AN, Lee NK, Laurence TA, Doose S, Margeat E, Weiss S (2004) Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules. Proc Natl Acad Sci USA 101:8936-8941
11. Muller BK, Zaychikov E, Brauchle C, Lamb DC (2005) Pulsed interleaved excitation. Biophys J 89:3508-3522
12. Kudryavtsev V, Sikor M, Kalinin S, Mokranjac D, Seidel CA, Lamb DC (2012) Combining MFD and PIE for accurate single-pair Förster resonance energy transfer measurements. Chemphyschem 13:1060-1078
13. Hendrix J, Schrimpf W, Höller M, Lamb DC (2013) Pulsed interleaved excitation fluctuation imaging. Biophys J 105:848-861
14. Dertinger T, Pacheco V, von der Hocht I, Hartmann R, Gregor I, Enderlein J (2007) Two-focus fluorescence correlation spectroscopy: a new tool for accurate and absolute diffusion measurements. Chemphyschem 8: 433-443
15. Hendrix J, Lamb DC (2013) Pulsed interleaved excitation: principles and applications. Methods Enzymol 518:205-243
16. Becker W, Hickl H, Zander C, Drexhage KH, Sauer M, Siebert S, Wolfrum J (1999) Timeresolved detection and identification of single analyte molecules in microcapillaries by timecorrelated single-photon counting (TCSPC). Rev Sci Instrum 70:1835
17. Lamb DC, Schenk A, Rocker C, Scalfi-Happ C, Nienhaus GU (2000) Sensitivity enhancement in fluorescence correlation spectroscopy of multiple species using time-gated detection. Biophys J 79:1129-1138
18. Naredi-Rainer N, Prescher J, Hartschuh A, Lamb DC (2013) Confocal microscopy. In: Kubitscheck U (ed) Fluorescence microscopy-from principles to biological applications, vol. 1 Wiley-VCH, Weinheim, p 527
19. Kapusta P (2010) Absolute diffusion coefficients: compilation of reference data for FCS calibration. Picoquant Application Note. http://www.picoquant.com/technotes/appnote-diffusion-coefficients.pdf.
20. Böhmer M, Wahl M, Rahn HJ, Erdmann R, Enderlein J (2002) Time-resolved fluorescence correlation spectroscopy. Chem Phys Lett 353:439-445
21. Chen Y, Muller JD, So PT, Gratton E (1999) The photon counting histogram in fluorescence fluctuation spectroscopy. Biophys J 77:553-567
22. Muller JD (2004) Cumulant analysis in fluorescence fluctuation spectroscopy. Biophys J 86:3981-3992
23. Digman MA, Gratton E (2009) Imaging barriers to diffusion by pair correlation functions. Biophys J 97:665-673
24. Ries J, Schwille P (2006) Studying slow membrane dynamics with continuous wave scanning fluorescence correlation spectroscopy. Biophys J 91:1915-1924
25. Petrasek Z, Schwille P (2008) Precise measurement of diffusion coefficients using scanning fluorescence correlation spectroscopy. Biophys J 94:1437-1448
26. Deniz AA, Dahan M, Grunwell JR, Ha TJ, Faulhaber AE, Chemla DS, Weiss S, Schultz PG (1999) Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Forster distance dependence and subpopulations. Proc Natl Acad Sci USA 96:3670-3675
27. Eggeling C, Berger S, Brand L, Fries JR, Schaffer J, Volkmer A, Seidel CAM (2001) Data registration and selective single-molecule analysis using multi-parameter fluorescence detection. J Biotechnol 86:163-180
28. Antonik M, Felekyan S, Gaiduk A, Seidel CA (2006) Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis. J Phys Chem B 110: 6970-6978
29. Digman MA, Brown CM, Sengupta P, Wiseman PW, Horwitz AR, Gratton E (2005) Measuring fast dynamics in solutions and cells with a laser scanning microscope. Biophys J 89: 1317-1327
30. Digman MA, Dalal R, Horwitz AF, Gratton E (2008) Mapping the number of molecules and brightness in the laser scanning microscope. Biophys J 94:2320-2332
31. Digman MA, Caiolfa VR, Zamai M, Gratton E (2008) The phasor approach to fluorescence lifetime imaging analysis. Biophys J 94: L14-L16
32. Hwang LC, Wohland T (2004) Dual-color fluorescence cross-correlation spectroscopy using single laser wavelength excitation. Chemphyschem 5:549-551
33. Savatier J, Jalaguier S, Ferguson ML, Cavailles V, Royer CA (2010) Estrogen receptor interactions and dynamics monitored in live cells by fluorescence cross-correlation spectroscopy. Biochemistry 49:772-781
34. Widengren J, Kudryavtsev V, Antonik M, Berger S, Gerken M, Seidel CA (2006) Singlemolecule detection and identification of multiple species by multiparameter fluorescence detection. Anal Chem 78:2039-2050
35. Dertinger T, Loman A, Ewers B, Muller CB, Kramer B, Enderlein J (2008) The optics and performance of dual-focus fluorescence correlation spectroscopy. Opt Express 16:14353-14368
36. Enderlein J, Gregor I, Patra D, Dertinger T, Kaupp UB (2005) Performance of fluorescence correlation spectroscopy for measuring diffusion and concentration. Chemphyschem 6:2324-2336
37. Hillesheim LN, Muller JD (2003) The photon counting histogram in fluorescence fluctuation spectroscopy with non-ideal photodetectors. Biophys J 85:1948-1958
38. Wiseman PW, Squier JA, Ellisman MH,Wilson KR (2000) Two-photon image correlation spectroscopy and image cross-correlation spectroscopy. J Microsc 200:14-25
39. Ivanchenko S, Lamb DC (2011) Fluorescence correlation spectroscopy: principles and developments. In: Brnjas-Kraljevic J, Pifat-Mrzljak G (eds) Supramolecular Structure and Function, vol. 10 Springer, Berlin, pp 1-30.
40. Wahl M, Gregor I, Patting M, Enderlein J (2003) Fast calculation of fluorescence correlation data with asynchronous time-correlated single-photon counting. Opt Express 11:3583-3591
41. Gregor I, Patra D, Enderlein J (2005) Optical saturation in fluorescence correlation spectroscopy under continuous-wave and pulsed excitation. Chemphyschem 6:164-170