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Volumn 162, Issue 1, 2015, Pages 96-107

A Dynamic Search Process Underlies MicroRNA Targeting

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE 2 PROTEIN; MICRORNA; ARGONAUTE PROTEIN; EIF2C2 PROTEIN, HUMAN;

EID: 84934286853     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2015.06.032     Document Type: Article
Times cited : (184)

References (61)
  • 1
    • 34447102459 scopus 로고    scopus 로고
    • Molecular basis for target RNA recognition and cleavage by human RISC
    • S.L. Ameres, J. Martinez, and R. Schroeder Molecular basis for target RNA recognition and cleavage by human RISC Cell 130 2007 101 112
    • (2007) Cell , vol.130 , pp. 101-112
    • Ameres, S.L.1    Martinez, J.2    Schroeder, R.3
  • 3
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: Target recognition and regulatory functions
    • D.P. Bartel MicroRNAs: target recognition and regulatory functions Cell 136 2009 215 233
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 4
    • 0019887628 scopus 로고
    • Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory
    • O.G. Berg, R.B. Winter, and P.H. von Hippel Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory Biochemistry 20 1981 6929 6948
    • (1981) Biochemistry , vol.20 , pp. 6929-6948
    • Berg, O.G.1    Winter, R.B.2    Von Hippel, P.H.3
  • 8
    • 80053197539 scopus 로고    scopus 로고
    • Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing
    • J.A. Broderick, W.E. Salomon, S.P. Ryder, N. Aronin, and P.D. Zamore Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing RNA 17 2011 1858 1869
    • (2011) RNA , vol.17 , pp. 1858-1869
    • Broderick, J.A.1    Salomon, W.E.2    Ryder, S.P.3    Aronin, N.4    Zamore, P.D.5
  • 10
    • 84861892611 scopus 로고    scopus 로고
    • A rule of seven in Watson-Crick base-pairing of mismatched sequences
    • I.I. Cisse, H. Kim, and T. Ha A rule of seven in Watson-Crick base-pairing of mismatched sequences Nat. Struct. Mol. Biol. 19 2012 623 627
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 623-627
    • Cisse, I.I.1    Kim, H.2    Ha, T.3
  • 16
    • 3042602447 scopus 로고    scopus 로고
    • Kinetic analysis of the RNAi enzyme complex
    • B. Haley, and P.D. Zamore Kinetic analysis of the RNAi enzyme complex Nat. Struct. Mol. Biol. 11 2004 599 606
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 599-606
    • Haley, B.1    Zamore, P.D.2
  • 17
    • 3042579602 scopus 로고    scopus 로고
    • How do site-specific DNA-binding proteins find their targets?
    • S.E. Halford, and J.F. Marko How do site-specific DNA-binding proteins find their targets? Nucleic Acids Res. 32 2004 3040 3052
    • (2004) Nucleic Acids Res. , vol.32 , pp. 3040-3052
    • Halford, S.E.1    Marko, J.F.2
  • 21
    • 84876935138 scopus 로고    scopus 로고
    • Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
    • A. Helwak, G. Kudla, T. Dudnakova, and D. Tollervey Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding Cell 153 2013 654 665
    • (2013) Cell , vol.153 , pp. 654-665
    • Helwak, A.1    Kudla, G.2    Dudnakova, T.3    Tollervey, D.4
  • 23
    • 84887791930 scopus 로고    scopus 로고
    • Dynamic anchoring of the 3′-end of the guide strand controls the target dissociation of Argonaute-guide complex
    • S.R. Jung, E. Kim, W. Hwang, S. Shin, J.J. Song, and S. Hohng Dynamic anchoring of the 3′-end of the guide strand controls the target dissociation of Argonaute-guide complex J. Am. Chem. Soc. 135 2013 16865 16871
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 16865-16871
    • Jung, S.R.1    Kim, E.2    Hwang, W.3    Shin, S.4    Song, J.J.5    Hohng, S.6
  • 24
    • 78049234242 scopus 로고    scopus 로고
    • Single-molecule analysis of Mss116-mediated group II intron folding
    • K.S. Karunatilaka, A. Solem, A.M. Pyle, and D. Rueda Single-molecule analysis of Mss116-mediated group II intron folding Nature 467 2010 935 939
    • (2010) Nature , vol.467 , pp. 935-939
    • Karunatilaka, K.S.1    Solem, A.2    Pyle, A.M.3    Rueda, D.4
  • 25
    • 84874646362 scopus 로고    scopus 로고
    • A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets
    • M. Khorshid, J. Hausser, M. Zavolan, and E. van Nimwegen A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets Nat. Methods 10 2013 253 255
    • (2013) Nat. Methods , vol.10 , pp. 253-255
    • Khorshid, M.1    Hausser, J.2    Zavolan, M.3    Van Nimwegen, E.4
  • 28
    • 84896402670 scopus 로고    scopus 로고
    • Increasing the brightness of cyanine fluorophores for single-molecule and superresolution imaging
    • K. Klehs, C. Spahn, U. Endesfelder, S.F. Lee, A. Furstenberg, and M. Heilemann Increasing the brightness of cyanine fluorophores for single-molecule and superresolution imaging Chemphyschem 15 2014 637 641
    • (2014) Chemphyschem , vol.15 , pp. 637-641
    • Klehs, K.1    Spahn, C.2    Endesfelder, U.3    Lee, S.F.4    Furstenberg, A.5    Heilemann, M.6
  • 31
    • 0036544755 scopus 로고    scopus 로고
    • Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation
    • E.C. Lai Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation Nat. Genet. 30 2002 363 364
    • (2002) Nat. Genet. , vol.30 , pp. 363-364
    • Lai, E.C.1
  • 32
    • 0027751663 scopus 로고
    • The C. Elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • R.C. Lee, R.L. Feinbaum, and V. Ambros The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 Cell 75 1993 843 854
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 33
    • 84862991581 scopus 로고    scopus 로고
    • Elastic coupling between RNA degradation and unwinding by an exoribonuclease
    • G. Lee, M.A. Bratkowski, F. Ding, A. Ke, and T. Ha Elastic coupling between RNA degradation and unwinding by an exoribonuclease Science 336 2012 1726 1729
    • (2012) Science , vol.336 , pp. 1726-1729
    • Lee, G.1    Bratkowski, M.A.2    Ding, F.3    Ke, A.4    Ha, T.5
  • 35
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • B.P. Lewis, C.B. Burge, and D.P. Bartel Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 120 2005 15 20
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 37
    • 15844371219 scopus 로고    scopus 로고
    • Structural basis for 5′-end-specific recognition of guide RNA by the A. Fulgidus Piwi protein
    • J.B. Ma, Y.R. Yuan, G. Meister, Y. Pei, T. Tuschl, and D.J. Patel Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein Nature 434 2005 666 670
    • (2005) Nature , vol.434 , pp. 666-670
    • Ma, J.B.1    Yuan, Y.R.2    Meister, G.3    Pei, Y.4    Tuschl, T.5    Patel, D.J.6
  • 38
    • 84879414849 scopus 로고    scopus 로고
    • Argonaute proteins: Functional insights and emerging roles
    • G. Meister Argonaute proteins: functional insights and emerging roles Nat. Rev. Genet. 14 2013 447 459
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 447-459
    • Meister, G.1
  • 42
  • 43
    • 58649113420 scopus 로고    scopus 로고
    • Enhancement of the seed-target recognition step in RNA silencing by a PIWI/MID domain protein
    • J.S. Parker, E.A. Parizotto, M. Wang, S.M. Roe, and D. Barford Enhancement of the seed-target recognition step in RNA silencing by a PIWI/MID domain protein Mol. Cell 33 2009 204 214
    • (2009) Mol. Cell , vol.33 , pp. 204-214
    • Parker, J.S.1    Parizotto, E.A.2    Wang, M.3    Roe, S.M.4    Barford, D.5
  • 44
    • 84881494657 scopus 로고    scopus 로고
    • RecA filament sliding on DNA facilitates homology search
    • K. Ragunathan, C. Liu, and T. Ha RecA filament sliding on DNA facilitates homology search eLife 1 2012 e00067
    • (2012) ELife , vol.1 , pp. e00067
    • Ragunathan, K.1    Liu, C.2    Ha, T.3
  • 45
    • 0014945567 scopus 로고
    • The lac repressor-operator interaction. 3. Kinetic studies
    • A.D. Riggs, S. Bourgeois, and M. Cohn The lac repressor-operator interaction. 3. Kinetic studies J. Mol. Biol. 53 1970 401 417
    • (1970) J. Mol. Biol. , vol.53 , pp. 401-417
    • Riggs, A.D.1    Bourgeois, S.2    Cohn, M.3
  • 46
    • 84924592451 scopus 로고    scopus 로고
    • Directional R-loop formation by the CRISPR-Cas surveillance complex cascade provides efficient off-target site rejection
    • M. Rutkauskas, T. Sinkunas, I. Songailiene, M.S. Tikhomirova, V. Siksnys, and R. Seidel Directional R-loop formation by the CRISPR-Cas surveillance complex cascade provides efficient off-target site rejection Cell Rep. 10 2015 1534 1543
    • (2015) Cell Rep. , vol.10 , pp. 1534-1543
    • Rutkauskas, M.1    Sinkunas, T.2    Songailiene, I.3    Tikhomirova, M.S.4    Siksnys, V.5    Seidel, R.6
  • 49
    • 84861451595 scopus 로고    scopus 로고
    • The crystal structure of human Argonaute2
    • N.T. Schirle, and I.J. MacRae The crystal structure of human Argonaute2 Science 336 2012 1037 1040
    • (2012) Science , vol.336 , pp. 1037-1040
    • Schirle, N.T.1    Macrae, I.J.2
  • 52
    • 84870979537 scopus 로고    scopus 로고
    • Activated GTPase movement on an RNA scaffold drives co-translational protein targeting
    • K. Shen, S. Arslan, D. Akopian, T. Ha, and S.O. Shan Activated GTPase movement on an RNA scaffold drives co-translational protein targeting Nature 492 2012 271 275
    • (2012) Nature , vol.492 , pp. 271-275
    • Shen, K.1    Arslan, S.2    Akopian, D.3    Ha, T.4    Shan, S.O.5
  • 55
  • 56
    • 70349961432 scopus 로고    scopus 로고
    • Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes
    • Y. Wang, S. Juranek, H. Li, G. Sheng, G.S. Wardle, T. Tuschl, and D.J. Patel Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes Nature 461 2009 754 761
    • (2009) Nature , vol.461 , pp. 754-761
    • Wang, Y.1    Juranek, S.2    Li, H.3    Sheng, G.4    Wardle, G.S.5    Tuschl, T.6    Patel, D.J.7
  • 57
    • 84870038812 scopus 로고    scopus 로고
    • Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties
    • L.M. Wee, C.F. Flores-Jasso, W.E. Salomon, and P.D. Zamore Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties Cell 151 2012 1055 1067
    • (2012) Cell , vol.151 , pp. 1055-1067
    • Wee, L.M.1    Flores-Jasso, C.F.2    Salomon, W.E.3    Zamore, P.D.4
  • 58
    • 84873860467 scopus 로고    scopus 로고
    • Large domain motions in Ago protein controlled by the guide DNA-strand seed region determine the Ago-DNA-mRNA complex recognition process
    • Z. Xia, T. Huynh, P. Ren, and R. Zhou Large domain motions in Ago protein controlled by the guide DNA-strand seed region determine the Ago-DNA-mRNA complex recognition process PLoS ONE 8 2013 e54620
    • (2013) PLoS ONE , vol.8 , pp. e54620
    • Xia, Z.1    Huynh, T.2    Ren, P.3    Zhou, R.4
  • 59
    • 0642345790 scopus 로고    scopus 로고
    • Structure and conserved RNA binding of the PAZ domain
    • K.S. Yan, S. Yan, A. Farooq, A. Han, L. Zeng, and M.M. Zhou Structure and conserved RNA binding of the PAZ domain Nature 426 2003 468 474
    • (2003) Nature , vol.426 , pp. 468-474
    • Yan, K.S.1    Yan, S.2    Farooq, A.3    Han, A.4    Zeng, L.5    Zhou, M.M.6
  • 60
    • 79959936612 scopus 로고    scopus 로고
    • Single-molecule approach to immunoprecipitated protein complexes: Insights into miRNA uridylation
    • K.H. Yeom, I. Heo, J. Lee, S. Hohng, V.N. Kim, and C. Joo Single-molecule approach to immunoprecipitated protein complexes: insights into miRNA uridylation EMBO Rep. 12 2011 690 696
    • (2011) EMBO Rep. , vol.12 , pp. 690-696
    • Yeom, K.H.1    Heo, I.2    Lee, J.3    Hohng, S.4    Kim, V.N.5    Joo, C.6
  • 61
    • 85011940616 scopus 로고    scopus 로고
    • Single-molecule FRET supports the two-state model of Argonaute action
    • A. Zander, P. Holzmeister, D. Klose, P. Tinnefeld, and D. Grohmann Single-molecule FRET supports the two-state model of Argonaute action RNA Biol. 11 2014 45 56
    • (2014) RNA Biol. , vol.11 , pp. 45-56
    • Zander, A.1    Holzmeister, P.2    Klose, D.3    Tinnefeld, P.4    Grohmann, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.