Dual 3'Seq using deepSuperSAGE uncovers transcriptomes of interacting Salmonella enterica Typhimurium and human host cells

BMC Genomics

Volumn 16, Issue 1, 2015, Pages

  Afonso Grunz, Fabian ^a,b   Hoffmeier, Klaus ^b   Müller, Sören ^a,b   Westermann, Alexander J ^c   Rotter, Björn ^b   Vogel, Jörg ^c   Winter, Peter ^b   Kahl, Günter ^a,b  

^a GOETHE UNIVERSITY   (Germany)

^b GENXPRO GMBH   (Germany)

^c UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

deepSuperSAGE; Dual 3'Seq; Gene expression profiling; Genome wide; Host pathogen interaction; MACE; Salmonella enterica Typhimurium strain SL1344; Simultaneous; Tag based; Transcriptome

Indexed keywords

I KAPPA B; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; MESSENGER RNA; MYELOID DIFFERENTIATION FACTOR 88; SMALL NUCLEAR RNA; SMALL NUCLEOLAR RNA; TOLL LIKE RECEPTOR 2; TOLL LIKE RECEPTOR 3; TOLL LIKE RECEPTOR 4; TOLL LIKE RECEPTOR 7; TOLL LIKE RECEPTOR 9; TRANSCRIPTION FACTOR RELB; TRANSCRIPTOME; UNTRANSLATED RNA;

ANTIGEN RECOGNITION; ARTICLE; BACTERIAL VIRULENCE; COMPARATIVE STUDY; COMPUTER MODEL; CONTROLLED STUDY; DDX58 GENE; DEEP SERIAL ANALYSIS OF GENE EXPRESSION; DNA DETERMINATION; DNA FLANKING REGION; DOWN REGULATION; DUAL 3' SEQUENCE; EUKARYOTE; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE LIBRARY; GENE SEQUENCE; HOST PATHOGEN INTERACTION; HUMAN; HUMAN CELL; IFIH1 GENE; IMMUNE RESPONSE; INNATE IMMUNITY; MASSIVE ANALYSIS OF CDNA END; NEXT GENERATION SEQUENCING; NFKB1 GENE; NFKB2 GENE; NONHUMAN; OPERON; PROKARYOTE; PTSN GENE; QUANTITATIVE ANALYSIS; RELB GENE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SALMONELLA ENTERICA SEROVAR TYPHIMURIUM; SSRA GENE; SSRB GENE; TRANSCRIPTION REGULATION; TRANSCRIPTOMICS; UPREGULATION; VALIDATION PROCESS; ANIMAL; ANIMAL SALMONELLOSIS; GENETICS; HIGH THROUGHPUT SEQUENCING; MICROBIOLOGY; NUCLEOTIDE SEQUENCE; PATHOGENICITY; SALMONELLA ENTERICA SEROVAR TYPHI;

EUKARYOTA; PROKARYOTA; SALMONELLA ENTERICA;

ANIMALS; BASE SEQUENCE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HOST-PATHOGEN INTERACTIONS; HUMANS; SALMONELLA INFECTIONS, ANIMAL; SALMONELLA TYPHI; TRANSCRIPTOME;

EID: 84933039705     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1489-1     Document Type: Article

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