메뉴 건너뛰기




Volumn 87, Issue 7, 2015, Pages 675-682

Identification and visualization of multidimensional antigen-specific T-cell populations in polychromatic cytometry data

Author keywords

Antigen specific T cells; Automated gating; Dimension reduction; Intracellular cytokine staining; Polyfunctionality; Visualization

Indexed keywords

ANTIGEN; CYTOKINE; EPITOPE;

EID: 84932199723     PISSN: 15524922     EISSN: 15524930     Source Type: Journal    
DOI: 10.1002/cyto.a.22623     Document Type: Article
Times cited : (23)

References (32)
  • 3
    • 41149096579 scopus 로고    scopus 로고
    • T-cell quality in memory and protection: Implications for vaccine design
    • Seder RA, Darrah PA, Roederer M. T-cell quality in memory and protection: Implications for vaccine design. Nat Rev Immunol 2008;8:247-258.
    • (2008) Nat Rev Immunol , vol.8 , pp. 247-258
    • Seder, R.A.1    Darrah, P.A.2    Roederer, M.3
  • 6
    • 42049123647 scopus 로고    scopus 로고
    • Automated gating of flow cytometry data via robust model-based clustering
    • Lo K, Brinkman RR, Gottardo R. Automated gating of flow cytometry data via robust model-based clustering. Cytometry Part A 2008:73A:321-332.
    • (2008) Cytometry Part A , vol.73A , pp. 321-332
    • Lo, K.1    Brinkman, R.R.2    Gottardo, R.3
  • 7
    • 67649488081 scopus 로고    scopus 로고
    • flowClust: A Bioconductor package for automated gating of flow cytometry data
    • Lo K, Hahne F, Brinkman RR, Gottardo R. flowClust: A Bioconductor package for automated gating of flow cytometry data. BMC Bioinformatics 2009;10:145.
    • (2009) BMC Bioinformatics , vol.10 , pp. 145
    • Lo, K.1    Hahne, F.2    Brinkman, R.R.3    Gottardo, R.4
  • 8
    • 77949555869 scopus 로고    scopus 로고
    • Merging mixture components for cell population identification in flow cytometry
    • Finak G, Bashashati A, Brinkman R, Gottardo R. Merging mixture components for cell population identification in flow cytometry. Adv. Bioinformatics 2009;247646.
    • (2009) Adv. Bioinformatics , pp. 247646
    • Finak, G.1    Bashashati, A.2    Brinkman, R.3    Gottardo, R.4
  • 9
    • 84881635497 scopus 로고    scopus 로고
    • Hierarchical Bayesian mixture modelling for antigen-specific T-cell subtyping in combinatorially encoded flow cytometry studies
    • Lin L, Chan C, Hadrup SR, Froesig TM, Wang Q, West M. Hierarchical Bayesian mixture modelling for antigen-specific T-cell subtyping in combinatorially encoded flow cytometry studies. Stat Appl Genet Mol Biol 2013;12:309-331.
    • (2013) Stat Appl Genet Mol Biol , vol.12 , pp. 309-331
    • Lin, L.1    Chan, C.2    Hadrup, S.R.3    Froesig, T.M.4    Wang, Q.5    West, M.6
  • 11
    • 84899129003 scopus 로고    scopus 로고
    • SWIFT-scalable clustering for automated identification of rare cell populations in large, high-dimensional flow cytometry datasets, part 2: Biological evaluation
    • Mosmann TR, Naim I, Rebhahn J, Datta S, Cavenaugh JS, Weaver JM, Sharma G. SWIFT-scalable clustering for automated identification of rare cell populations in large, high-dimensional flow cytometry datasets, part 2: Biological evaluation. Cytometry A 2014;85:422-433.
    • (2014) Cytometry A , vol.85 , pp. 422-433
    • Mosmann, T.R.1    Naim, I.2    Rebhahn, J.3    Datta, S.4    Cavenaugh, J.S.5    Weaver, J.M.6    Sharma, G.7
  • 12
    • 77954223563 scopus 로고    scopus 로고
    • FlowFP: A Bioconductor package for fingerprinting flow cytometric data
    • Rogers WT, Holyst HA. FlowFP: A Bioconductor package for fingerprinting flow cytometric data. Adv Bioinformatics 2009;193947.
    • (2009) Adv Bioinformatics , pp. 193947
    • Rogers, W.T.1    Holyst, H.A.2
  • 13
    • 80052666687 scopus 로고    scopus 로고
    • Unsupervised clustering of multidimensional distributions using earth mover distance
    • Proceedings of the 17th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD '11, San Diego, CA
    • Applegate D, Dasu T, Krishnan S, Urbanek S. Unsupervised clustering of multidimensional distributions using earth mover distance. Proceedings of the 17th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD '11, San Diego, CA, 2011. pp. 636.
    • (2011) , pp. 636
    • Applegate, D.1    Dasu, T.2    Krishnan, S.3    Urbanek, S.4
  • 19
    • 79251515158 scopus 로고    scopus 로고
    • SPICE: Exploration and analysis of post-cytometric complex multivariate datasets
    • Roederer M, Nozzi JL, Nason MC. SPICE: Exploration and analysis of post-cytometric complex multivariate datasets. Cytometry A 2011;79:167-174.
    • (2011) Cytometry A , vol.79 , pp. 167-174
    • Roederer, M.1    Nozzi, J.L.2    Nason, M.C.3
  • 22
    • 84856278095 scopus 로고    scopus 로고
    • Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes
    • Newell EW, Sigal N, Bendall SC, Nolan GP, Davis MM. Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes. Immunity 2012;36:142-152.
    • (2012) Immunity , vol.36 , pp. 142-152
    • Newell, E.W.1    Sigal, N.2    Bendall, S.C.3    Nolan, G.P.4    Davis, M.M.5
  • 24
    • 84891956083 scopus 로고    scopus 로고
    • Automatic classification of cellular expression by nonlinear stochastic embedding (ACCENSE)
    • Shekhar K, Brodin P, Davis MM, Chakraborty AK. Automatic classification of cellular expression by nonlinear stochastic embedding (ACCENSE). Proc Natl Acad Sci USA 2014;111:202-207.
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 202-207
    • Shekhar, K.1    Brodin, P.2    Davis, M.M.3    Chakraborty, A.K.4
  • 25
    • 84874076180 scopus 로고    scopus 로고
    • Visualization of SNPs with t-SNE
    • Platzer A. Visualization of SNPs with t-SNE. PLoS One 2013;8:e56883.
    • (2013) PLoS One , vol.8 , pp. e56883
    • Platzer, A.1
  • 26
    • 84897059078 scopus 로고    scopus 로고
    • Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses
    • Arsenio J, Kakaradov B, Metz PJ, Kim SH, Yeo GW, Chang JT. Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses. Nat Immunol 2014;15:365-372.
    • (2014) Nat Immunol , vol.15 , pp. 365-372
    • Arsenio, J.1    Kakaradov, B.2    Metz, P.J.3    Kim, S.H.4    Yeo, G.W.5    Chang, J.T.6
  • 27
    • 80053178761 scopus 로고    scopus 로고
    • An intuitive graphical visualization technique for the interrogation of transcriptome data
    • Bushati N, Smith J, Briscoe J, Watkins C. An intuitive graphical visualization technique for the interrogation of transcriptome data. Nucleic Acids Res 2011;39:7380-7389.
    • (2011) Nucleic Acids Res , vol.39 , pp. 7380-7389
    • Bushati, N.1    Smith, J.2    Briscoe, J.3    Watkins, C.4
  • 31
    • 84869813587 scopus 로고    scopus 로고
    • OMIP-014: validated multifunctional characterization of antigen-specific human T cells by intracellular cytokine staining
    • De Rosa SC, Carter DK, McElrath MJ. OMIP-014: validated multifunctional characterization of antigen-specific human T cells by intracellular cytokine staining. Cytometry A 2012;81A:1019-1021.
    • (2012) Cytometry A , vol.81A , pp. 1019-1021
    • De Rosa, S.C.1    Carter, D.K.2    McElrath, M.J.3
  • 32
    • 84930939562 scopus 로고    scopus 로고
    • rAd5 prime/NYVAC-B boost regimen is superior to NYVAC-B prime/rAd5 boost regimen for both response rates and magnitude of CD4 and CD8 T-cell responses
    • Bart P, Huang Y, Frahm N, Karuna S, Allen M, Kochar N, Chappuis S, Gaillard J, Graham B, Pantaleo G. rAd5 prime/NYVAC-B boost regimen is superior to NYVAC-B prime/rAd5 boost regimen for both response rates and magnitude of CD4 and CD8 T-cell responses. Retrovirology 2012;9:O72.
    • (2012) Retrovirology , vol.9 , pp. O72
    • Bart, P.1    Huang, Y.2    Frahm, N.3    Karuna, S.4    Allen, M.5    Kochar, N.6    Chappuis, S.7    Gaillard, J.8    Graham, B.9    Pantaleo, G.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.