-
1
-
-
79960468271
-
Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
-
Anderson RE, Brazelton WJ, Baross JA. Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage. FEMS Microbiol Ecol 2011;77:120-33.
-
(2011)
FEMS Microbiol Ecol
, vol.77
, pp. 120-133
-
-
Anderson, R.E.1
Brazelton, W.J.2
Baross, J.A.3
-
2
-
-
79952464208
-
Are low temperature habitats hot spots of microbial evolution driven by viruses?
-
Anesio AM, Bellas CM. Are low temperature habitats hot spots of microbial evolution driven by viruses? Trends Microbiol 2011;19:52-7.
-
(2011)
Trends Microbiol
, vol.19
, pp. 52-57
-
-
Anesio, A.M.1
Bellas, C.M.2
-
3
-
-
39849110751
-
Viral dynamics in cryoconite holes on a high Arctic glacier (Svalbard)
-
Anesio AM, Mindl B, Laybourn-Parry J, et al. Viral dynamics in cryoconite holes on a high Arctic glacier (Svalbard). J Geophys Res 2007;112:G04S31.
-
(2007)
J Geophys Res
, vol.112
, pp. G04S31
-
-
Anesio, A.M.1
Mindl, B.2
Laybourn-Parry, J.3
-
4
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, Fremaux C, Deveau H, et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007;315:1709-12.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
-
5
-
-
84883133392
-
High diversity and potential origins of T4-type bacteriophages on the surface of Arctic glaciers
-
Bellas CM, Anesio AM. High diversity and potential origins of T4-type bacteriophages on the surface of Arctic glaciers. Extremophiles 2013;17:861-70.
-
(2013)
Extremophiles
, vol.17
, pp. 861-870
-
-
Bellas, C.M.1
Anesio, A.M.2
-
6
-
-
84891918567
-
Viral impacts on bacterial communities in Arctic cryoconite
-
Bellas CM, Anesio AM, Telling J, et al. Viral impacts on bacterial communities in Arctic cryoconite. Environ Res Lett 2013;8:045021.
-
(2013)
Environ Res Lett
, vol.8
, pp. 045021
-
-
Bellas, C.M.1
Anesio, A.M.2
Telling, J.3
-
8
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2011;7:335-6.
-
(2011)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
-
9
-
-
0000991157
-
Recovery and identification of viable bacteria immured in glacial ice
-
Christner BC, Mosley-thompson E, Thompson LG, et al. Recovery and identification of viable bacteria immured in glacial ice. Icarus 2000;144:479-85.
-
(2000)
Icarus
, vol.144
, pp. 479-485
-
-
Christner, B.C.1
Mosley-thompson, E.2
Thompson, L.G.3
-
10
-
-
84871438011
-
Genomic analysis of cold-active Colwelliaphage 9A and psychrophilic phage-host interactions
-
Colangelo-Lillis JR, Deming JW. Genomic analysis of cold-active Colwelliaphage 9A and psychrophilic phage-host interactions. Extremophiles 2013;17:99-114.
-
(2013)
Extremophiles
, vol.17
, pp. 99-114
-
-
Colangelo-Lillis, J.R.1
Deming, J.W.2
-
11
-
-
84861998124
-
Virus genes in Arctic marine bacteria identified by metagenomic analysis
-
Cottrell M, Kirchman D. Virus genes in Arctic marine bacteria identified by metagenomic analysis. Aquat Microb Ecol 2012;66:107-16.
-
(2012)
Aquat Microb Ecol
, vol.66
, pp. 107-116
-
-
Cottrell, M.1
Kirchman, D.2
-
12
-
-
0036737998
-
Nontuberculous mycobacteria in the environment
-
Falkinham JOI. Nontuberculous mycobacteria in the environment. Clin Chest Med 2002;23:529-51.
-
(2002)
Clin Chest Med
, vol.23
, pp. 529-551
-
-
Falkinham, J.O.I.1
-
13
-
-
84870718176
-
Memory of viral infections by CRISPRCas adaptive immune systems: acquisition of new information.
-
Fineran PC, Charpentier E.Memory of viral infections by CRISPRCas adaptive immune systems: acquisition of new information. Virology 2012;434:202-9.
-
(2012)
Virology
, vol.434
, pp. 202-209
-
-
Fineran, P.C.1
Charpentier, E.2
-
14
-
-
79955647604
-
When a habitat freezes solid: microorganisms over-winter within the ice column of a coastal Antarctic lake
-
Foreman CM, Dieser M, Greenwood M, et al. When a habitat freezes solid: microorganisms over-winter within the ice column of a coastal Antarctic lake. FEMS Microbiol Ecol 2011;76:401-12.
-
(2011)
FEMS Microbiol Ecol
, vol.76
, pp. 401-412
-
-
Foreman, C.M.1
Dieser, M.2
Greenwood, M.3
-
15
-
-
23944506044
-
Mobile genetic elements: the agents of open source evolution
-
Frost LS, Leplae R, Summers AO, et al. Mobile genetic elements: the agents of open source evolution. Nat Rev Microbiol 2005;3:722-32.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 722-732
-
-
Frost, L.S.1
Leplae, R.2
Summers, A.O.3
-
16
-
-
84870431038
-
CD-HIT: accelerated for clustering the next-generation sequencing data
-
Fu L, Niu B, Zhu Z, et al. CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 2012;28:3150-2.
-
(2012)
Bioinformatics
, vol.28
, pp. 3150-3152
-
-
Fu, L.1
Niu, B.2
Zhu, Z.3
-
17
-
-
0033542481
-
Marine viruses and their biogeochemical and ecological effects
-
Fuhrman JA. Marine viruses and their biogeochemical and ecological effects. Nature 1999;399:541-8.
-
(1999)
Nature
, vol.399
, pp. 541-548
-
-
Fuhrman, J.A.1
-
18
-
-
28244480349
-
Distribution and phylogeny of glacier ice worms (Mesenchytraeus solifugus and Mesenchytraeus solifugus rainierensis)
-
Hartzell PL, Nghiem JV, Richio KJ, et al. Distribution and phylogeny of glacier ice worms (Mesenchytraeus solifugus and Mesenchytraeus solifugus rainierensis). Can J Zool 2005;83:1206-13.
-
(2005)
Can J Zool
, vol.83
, pp. 1206-1213
-
-
Hartzell, P.L.1
Nghiem, J.V.2
Richio, K.J.3
-
19
-
-
84881090889
-
Twelve previously unknown phage genera are ubiquitous in global oceans
-
Holmfeldt K, Solonenko N, Shah M, et al. Twelve previously unknown phage genera are ubiquitous in global oceans. P Natl Acad Sci USA 2013;110:12798-803.
-
(2013)
P Natl Acad Sci USA
, vol.110
, pp. 12798-12803
-
-
Holmfeldt, K.1
Solonenko, N.2
Shah, M.3
-
20
-
-
84887380143
-
Metabolic reprogramming by viruses in the sunlit and dark ocean
-
Hurwitz BL, Hallam SJ, Sullivan MB. Metabolic reprogramming by viruses in the sunlit and dark ocean. Genome Biol 2013;14:R123.
-
(2013)
Genome Biol
, vol.14
, pp. R123
-
-
Hurwitz, B.L.1
Hallam, S.J.2
Sullivan, M.B.3
-
21
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
Jansen R, Embden JD, GaastraW, et al. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 2002;43:1565-75.
-
(2002)
Mol Microbiol
, vol.43
, pp. 1565-1575
-
-
Jansen, R.1
Embden, J.D.2
Gaastra, W.3
-
22
-
-
0031902076
-
Gene transfer by transduction in the marine environment
-
Jiang SC, Paul JH. Gene transfer by transduction in the marine environment. Appl Environ Microb 1998;64:2780-87.
-
(1998)
Appl Environ Microb
, vol.64
, pp. 2780-2787
-
-
Jiang, S.C.1
Paul, J.H.2
-
23
-
-
58149520031
-
Genomic characterization of Ralstonia solanacearum phage phiRSB1, a T7-like wide-host-range phage
-
Kawasaki T, Shimizu M, Satsuma H, et al. Genomic characterization of Ralstonia solanacearum phage phiRSB1, a T7-like wide-host-range phage. J Bacteriol 2009;191:422-7.
-
(2009)
J Bacteriol
, vol.191
, pp. 422-427
-
-
Kawasaki, T.1
Shimizu, M.2
Satsuma, H.3
-
24
-
-
0019286483
-
Natural populations of the genus Staphylococcus
-
Kloos WE. Natural populations of the genus Staphylococcus. Annu Rev Microbiol 1980;34:559-92.
-
(1980)
Annu Rev Microbiol
, vol.34
, pp. 559-592
-
-
Kloos, W.E.1
-
25
-
-
84875119069
-
Understanding bacteriophage specificity in natural microbial communities
-
Koskella B, Meaden S. Understanding bacteriophage specificity in natural microbial communities. Viruses 2013;5: 806-23.
-
(2013)
Viruses
, vol.5
, pp. 806-823
-
-
Koskella, B.1
Meaden, S.2
-
26
-
-
35748974534
-
Evolutionary conservation of sequence and secondary structures in CRISPR repeats
-
Kunin V, Sorek R, Hugenholtz P. Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 2007;8:R61.
-
(2007)
Genome Biol
, vol.8
, pp. R61
-
-
Kunin, V.1
Sorek, R.2
Hugenholtz, P.3
-
27
-
-
77951765839
-
Microbial sequences retrieved from environmental samples from seasonal arctic snow and meltwater from Svalbard, Norway
-
Larose C, Berger S, Ferrari C, et al. Microbial sequences retrieved from environmental samples from seasonal arctic snow and meltwater from Svalbard, Norway. Extremophiles 2010;14: 205-12.
-
(2010)
Extremophiles
, vol.14
, pp. 205-212
-
-
Larose, C.1
Berger, S.2
Ferrari, C.3
-
28
-
-
84894262624
-
Interactions between snow chemistry, mercury inputs and microbial population dynamics in an Arctic snowpack
-
Larose C, Prestat E, Cecillon S, et al. Interactions between snow chemistry, mercury inputs and microbial population dynamics in an Arctic snowpack. PLoS One 2013;8:e79972.
-
(2013)
PLoS One
, vol.8
, pp. e79972
-
-
Larose, C.1
Prestat, E.2
Cecillon, S.3
-
29
-
-
27744480467
-
Photosynthesis genes in marine viruses yield proteins during host infection
-
Lindell D, Jaffe JD, Johnson ZI, et al. Photosynthesis genes in marine viruses yield proteins during host infection. Nature 2005;438:86-9.
-
(2005)
Nature
, vol.438
, pp. 86-89
-
-
Lindell, D.1
Jaffe, J.D.2
Johnson, Z.I.3
-
30
-
-
70449376998
-
High diversity of the viral community from an Antarctic lake
-
Ĺopez-Bueno A, Tamames J, Velázquez D, et al. High diversity of the viral community from an Antarctic lake. Science 2009;326:858-61.
-
(2009)
Science
, vol.326
, pp. 858-861
-
-
Ĺopez-Bueno, A.1
Tamames, J.2
Velázquez, D.3
-
31
-
-
53549118607
-
The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, et al. The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 2008;9:386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
-
32
-
-
0346500434
-
Phylogenetic and physiological diversity of microorganisms isolated from a deep Greenland glacier ice core
-
Miteva VI, Sheridan PP, Brenchley JE. Phylogenetic and physiological diversity of microorganisms isolated from a deep Greenland glacier ice core. Appl Environ Microb 2004;70: 202-13.
-
(2004)
Appl Environ Microb
, vol.70
, pp. 202-213
-
-
Miteva, V.I.1
Sheridan, P.P.2
Brenchley, J.E.3
-
33
-
-
16444385662
-
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
-
Mojica FJM, Diez-Villasen or C, Garćia-Martinez J, et al. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 2005;60: 174-82.
-
(2005)
J Mol Evol
, vol.60
, pp. 174-182
-
-
Mojica, F.J.M.1
Diez-Villaseñor, C.2
Garćia-Martinez, J.3
-
34
-
-
0029166294
-
Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloforax mediterranei and Haloferax volcanii and could be involved in replicon partitioning
-
Mojica FJM, Ferrer C, Juez G. Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloforax mediterranei and Haloferax volcanii and could be involved in replicon partitioning. 1995;17:85-93.
-
(1995)
, vol.17
, pp. 85-93
-
-
Mojica, F.J.M.1
Ferrer, C.2
Juez, G.3
-
36
-
-
84942307650
-
Census of bacterial microbiota associated with the glacier ice worm Mesenchytraeus solifugus
-
Murakami T, Segawa T, Bodington D, et al. Census of bacterial microbiota associated with the glacier ice worm Mesenchytraeus solifugus. FEMS Microbiol Ecol 2015;91:1-10.
-
(2015)
FEMS Microbiol Ecol
, vol.91
, pp. 1-10
-
-
Murakami, T.1
Segawa, T.2
Bodington, D.3
-
37
-
-
84859582922
-
Finding a needle in the virus metagenome haystack-micro-metagenome analysis captures a snapshot of the diversity of a bacteriophage armoire
-
Ray J, Dondrup M, Modha S, et al. Finding a needle in the virus metagenome haystack-micro-metagenome analysis captures a snapshot of the diversity of a bacteriophage armoire. PLoS One 2012;7:e34238.
-
(2012)
PLoS One
, vol.7
, pp. e34238
-
-
Ray, J.1
Dondrup, M.2
Modha, S.3
-
38
-
-
84864042533
-
Diverse CRISPRs evolving in human microbiomes
-
RhoM,WuY-W, TangH, et al. Diverse CRISPRs evolving in human microbiomes. PLoS Genet 2012;8:e1002441.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002441
-
-
Rho, M.1
Wu, Y.-W.2
Tang, H.3
-
40
-
-
66149151286
-
Viruses manipulate the marine environment
-
Rohwer F, Thurber RV. Viruses manipulate the marine environment. Nature 2009;459:207-12.
-
(2009)
Nature
, vol.459
, pp. 207-212
-
-
Rohwer, F.1
Thurber, R.V.2
-
41
-
-
80053370586
-
Exploring the viralworld through metagenomics
-
Rosario K, Breitbart M. Exploring the viralworld through metagenomics. Curr Opin Virol 2011;1:289-97.
-
(2011)
Curr Opin Virol
, vol.1
, pp. 289-297
-
-
Rosario, K.1
Breitbart, M.2
-
42
-
-
80054911634
-
Metavir: a web server dedicated to virome analysis
-
Roux S, Faubladier M, Mahul A, et al. Metavir: a web server dedicated to virome analysis. Bioinformatics 2011;27:3074-5.
-
(2011)
Bioinformatics
, vol.27
, pp. 3074-3075
-
-
Roux, S.1
Faubladier, M.2
Mahul, A.3
-
43
-
-
84869054051
-
A travel guide to Cytoscape plugins
-
Saito R, Smoot ME, Ono K, et al. A travel guide to Cytoscape plugins. Nat Methods 2012;9:1069-76.
-
(2012)
Nat Methods
, vol.9
, pp. 1069-1076
-
-
Saito, R.1
Smoot, M.E.2
Ono, K.3
-
44
-
-
0035315947
-
Method for host-independent detection of generalized transducing bacteriophages in natural habitats
-
Sander M, Schmieger H. Method for host-independent detection of generalized transducing bacteriophages in natural habitats. Appl Environ Microb 2001;67:1490-3.
-
(2001)
Appl Environ Microb
, vol.67
, pp. 1490-1493
-
-
Sander, M.1
Schmieger, H.2
-
46
-
-
33846105433
-
High viral infection rates in Antarctic and Arctic bacterioplankton
-
Säwström C, Graneli W, Laybourn-Parry J, et al. High viral infection rates in Antarctic and Arctic bacterioplankton. Environ Microbiol 2007;9:250-5.
-
(2007)
Environ Microbiol
, vol.9
, pp. 250-255
-
-
Säwström, C.1
Graneli, W.2
Laybourn-Parry, J.3
-
47
-
-
84879745242
-
Subglacial Lake Vostok (Antarctica) accretion ice contains a diverse set of sequences from aquatic, marine and sediment-inhabiting bacteria and eukarya
-
Shtarkman YM, Kocer ZA, Edgar R, et al. Subglacial Lake Vostok (Antarctica) accretion ice contains a diverse set of sequences from aquatic, marine and sediment-inhabiting bacteria and eukarya. PLoS One 2013;8:e67221.
-
(2013)
PLoS One
, vol.8
, pp. e67221
-
-
Shtarkman, Y.M.1
Koçer, Z.A.2
Edgar, R.3
-
48
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle CA. Marine viruses-major players in the global ecosystem. Nat Rev Microbiol 2007;5:801-12.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
49
-
-
79959319829
-
CRISPR-based adaptive immune systems
-
Terns MP, Terns RM. CRISPR-based adaptive immune systems. Curr Opin Microbiol 2011;14:321-7.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 321-327
-
-
Terns, M.P.1
Terns, R.M.2
-
50
-
-
0033826796
-
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
-
Thingstad TF. Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol Oceanogr 2000;45:1320-8.
-
(2000)
Limnol Oceanogr
, vol.45
, pp. 1320-1328
-
-
Thingstad, T.F.1
-
51
-
-
64749109065
-
Laboratory procedures to generate viral metagenomes
-
Thurber RV, Haynes M, Breitbart M, et al. Laboratory procedures to generate viral metagenomes. Nat Protoc 2009;4: 470-83.
-
(2009)
Nat Protoc
, vol.4
, pp. 470-483
-
-
Thurber, R.V.1
Haynes, M.2
Breitbart, M.3
-
52
-
-
9744280392
-
Taxonomy of the genus Cupriavidus: a tale of lost and found
-
Vandamme P, Coenye T. Taxonomy of the genus Cupriavidus: a tale of lost and found. Int J Syst Evol Micr 2004;54: 2285-9.
-
(2004)
Int J Syst Evol Micr
, vol.54
, pp. 2285-2289
-
-
Vandamme, P.1
Coenye, T.2
-
53
-
-
68449097696
-
Cupriavidus metallidurans: evolution of a metal-resistant bacterium
-
von Rozycki T, Nies DH. Cupriavidus metallidurans: evolution of a metal-resistant bacterium. Antonie Van Leeuwenhoek 2009;96:115-39.
-
(2009)
Antonie Van Leeuwenhoek
, vol.96
, pp. 115-139
-
-
von Rozycki, T.1
Nies, D.H.2
-
54
-
-
0030057090
-
Lysogenic conversion by a filamentous phage encoding cholera toxin
-
Waldor MK, Mekalanos JJ. Lysogenic conversion by a filamentous phage encoding cholera toxin. Science 1996;272:1910-4.
-
(1996)
Science
, vol.272
, pp. 1910-1914
-
-
Waldor, M.K.1
Mekalanos, J.J.2
-
55
-
-
1942486000
-
Ecology of prokaryotic viruses
-
Weinbauer MG. Ecology of prokaryotic viruses. FEMS Microbiol Rev 2004;28:127-81.
-
(2004)
FEMS Microbiol Rev
, vol.28
, pp. 127-181
-
-
Weinbauer, M.G.1
-
56
-
-
0842266354
-
Are viruses driving microbial diversification and diversity?
-
Weinbauer MG, Rassoulzadegan F. Are viruses driving microbial diversification and diversity? Environ Microbiol 2003;6:1-11.
-
(2003)
Environ Microbiol
, vol.6
, pp. 1-11
-
-
Weinbauer, M.G.1
Rassoulzadegan, F.2
-
57
-
-
33745161038
-
Brief report Modelled and measured dynamics of viruses in Arctic winter sea-ice brines
-
Wells LE, Deming JW. Brief report Modelled and measured dynamics of viruses in Arctic winter sea-ice brines. Environ Microbiol 2006;8:1115-21.
-
(2006)
Environ Microbiol
, vol.8
, pp. 1115-1121
-
-
Wells, L.E.1
Deming, J.W.2
-
58
-
-
84884206093
-
Estimates of viral abundance in soils are strongly influenced by extraction and enumeration methods
-
Williamson KE, Corzo KA, Drissi CL, et al. Estimates of viral abundance in soils are strongly influenced by extraction and enumeration methods. Biol Fert Soils 2013;49:857-69.
-
(2013)
Biol Fert Soils
, vol.49
, pp. 857-869
-
-
Williamson, K.E.1
Corzo, K.A.2
Drissi, C.L.3
-
59
-
-
23744479179
-
16S rRNA sequences and differences in bacteria isolated fromthe Muztag Ata glacier at increasing depths
-
Xiang S, Yao T, An L, et al. 16S rRNA sequences and differences in bacteria isolated fromthe Muztag Ata glacier at increasing depths. Appl Environ Microb 2005;71:4619-27.
-
(2005)
Appl Environ Microb
, vol.71
, pp. 4619-4627
-
-
Xiang, S.1
Yao, T.2
An, L.3
|