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Volumn 14, Issue 2, 2010, Pages 205-212

Microbial sequences retrieved from environmental samples from seasonal Arctic snow and meltwater from Svalbard, Norway

Author keywords

Arctic; Biodiversity; Environmental samples; Meltwater; Snow bacteria

Indexed keywords

ACIDOBACTERIA; ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; FLAVOBACTERIA; SPHINGOBACTERIA;

EID: 77951765839     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-009-0299-2     Document Type: Article
Times cited : (86)

References (45)
  • 1
    • 33846258671 scopus 로고    scopus 로고
    • Bacterial characterization of the snow cover at Spitzberg, Svalbard
    • Amato P et al (2007) Bacterial characterization of the snow cover at Spitzberg, Svalbard. FEMS Microbiol Ecol 59: 255-264.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 255-264
    • Amato, P.1
  • 2
    • 33846229164 scopus 로고    scopus 로고
    • Mercury (micro) biogeochemistry in polar environments
    • Barkay T, Poulain AJ (2007) Mercury (micro) biogeochemistry in polar environments. FEMS Microbiol Ecol 59: 232-241.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 232-241
    • Barkay, T.1    Poulain, A.J.2
  • 5
    • 0001463548 scopus 로고
    • Non-parametric estimation of the number of classes in a population
    • Chao A (1984) Non-parametric estimation of the number of classes in a population. Scand J Stat 11: 265-270.
    • (1984) Scand J Stat , vol.11 , pp. 265-270
    • Chao, A.1
  • 6
    • 0028134033 scopus 로고
    • Growth and pigmentation in Sphingobacterium antarcticus, a psychotropic bacterium from Antarctica
    • Chauhan S, Shivaji S (1994) Growth and pigmentation in Sphingobacterium antarcticus, a psychotropic bacterium from Antarctica. Polar Biol 14: 31-36.
    • (1994) Polar Biol , vol.14 , pp. 31-36
    • Chauhan, S.1    Shivaji, S.2
  • 7
    • 33846194531 scopus 로고    scopus 로고
    • Cultivation-independent and -dependent characterization of Bacteria resident beneath John Evans Glacier
    • Cheng SM, Foght JM (2007) Cultivation-independent and -dependent characterization of Bacteria resident beneath John Evans Glacier. FEMS Microbiol Ecol 59: 318-330.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 318-330
    • Cheng, S.M.1    Foght, J.M.2
  • 10
    • 0037251969 scopus 로고    scopus 로고
    • The ribosomal database project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
    • Cole JR et al (2003) The ribosomal database project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31: 442-443.
    • (2003) Nucleic Acids Res , vol.31 , pp. 442-443
    • Cole, J.R.1
  • 11
    • 58149200948 scopus 로고    scopus 로고
    • The ribosomal database project: Improved alignments and new tools for rRNA analysis
    • doi: 110. 1093/nar/gkn1879
    • Cole JR et al (2009) The ribosomal database project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: Database Issue D141-D145. doi: 110. 1093/nar/gkn1879.
    • (2009) Nucleic Acids Res 37: Database Issue D141-D145
    • Cole, J.R.1
  • 13
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good IL (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.L.1
  • 14
    • 40349114597 scopus 로고    scopus 로고
    • Glacial ecosystems
    • Hodson A et al (2008) Glacial ecosystems. Ecol Monogr 78: 41-67.
    • (2008) Ecol Monogr , vol.78 , pp. 41-67
    • Hodson, A.1
  • 15
    • 0002577666 scopus 로고
    • Optimal temperatures and temperature ranges for growth of snow algae
    • Hoham RW (1975) Optimal temperatures and temperature ranges for growth of snow algae. Arct Alp Res 7: 13-24.
    • (1975) Arct Alp Res , vol.7 , pp. 13-24
    • Hoham, R.W.1
  • 16
    • 0002226280 scopus 로고    scopus 로고
    • Microbial ecology of snow and freshwater ice with emphasis on snow algae
    • H. G. Jones, J. W. Pomeroy, D. A. Walker, and R. W. Hoham (Eds.), Cambridge: Cambridge University Press
    • Hoham RW, Duval B (2001) Microbial ecology of snow and freshwater ice with emphasis on snow algae. In: Jones HG, Pomeroy JW, Walker DA, Hoham RW (eds) Snow ecology: an interdisciplinary examination of snow-covered ecosystems. Cambridge University Press, Cambridge, pp 168-228.
    • (2001) Snow Ecology: An Interdisciplinary Examination of Snow-Covered Ecosystems , pp. 168-228
    • Hoham, R.W.1    Duval, B.2
  • 18
    • 0033208454 scopus 로고    scopus 로고
    • The ecology of snow-covered systems: A brief overview of nutrient cycling and life in the cold
    • Jones HG (1999) The ecology of snow-covered systems: a brief overview of nutrient cycling and life in the cold. Hydrol Process 13: 2135-2147.
    • (1999) Hydrol Process , vol.13 , pp. 2135-2147
    • Jones, H.G.1
  • 19
    • 63349105158 scopus 로고    scopus 로고
    • A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
    • Jones RT, Robeson MS, Lauber CL, Hamady M, Knight R, Fierer N (2009) A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. Isme J 3: 442-453.
    • (2009) Isme J , vol.3 , pp. 442-453
    • Jones, R.T.1    Robeson, M.S.2    Lauber, C.L.3    Hamady, M.4    Knight, R.5    Fierer, N.6
  • 20
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro (Ed.), New York: Academic Press
    • Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, New York, pp 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 21
    • 0842324405 scopus 로고    scopus 로고
    • Bacterial diversity in aquatic and other environments: What 16S rDNA libraries can tell us
    • Kemp PF, Aller JY (2004) Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us. FEMS Microbiol Ecol 47: 161-177.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 161-177
    • Kemp, P.F.1    Aller, J.Y.2
  • 22
    • 0034962210 scopus 로고    scopus 로고
    • The nutrient cycle through snow and ice, a review
    • Kuhn M (2001) The nutrient cycle through snow and ice, a review. Aquat Sci 63: 150-167.
    • (2001) Aquat Sci , vol.63 , pp. 150-167
    • Kuhn, M.1
  • 23
    • 33750824183 scopus 로고    scopus 로고
    • Microbial community structure in moraine lakes and glacial meltwaters, Mount Everest
    • Liu Y, Yao T, Jiao N, Kang S, Zeng Y, Huang S (2006) Microbial community structure in moraine lakes and glacial meltwaters, Mount Everest. FEMS Microbiol Lett 265: 98-105.
    • (2006) FEMS Microbiol Lett , vol.265 , pp. 98-105
    • Liu, Y.1    Yao, T.2    Jiao, N.3    Kang, S.4    Zeng, Y.5    Huang, S.6
  • 24
    • 67349266235 scopus 로고    scopus 로고
    • Bacterial diversity in the snow over Tibetan Plateau Glaciers
    • Liu Y et al (2009) Bacterial diversity in the snow over Tibetan Plateau Glaciers. Extremophiles 13: 411-423.
    • (2009) Extremophiles , vol.13 , pp. 411-423
    • Liu, Y.1
  • 26
    • 57449083753 scopus 로고    scopus 로고
    • Bacteria in snow and glacier ice
    • R. Margesin, F. Schinner, J. C. Marx, and C. Gerday (Eds.), Berlin: Springer
    • Miteva V (2007) Bacteria in snow and glacier ice. In: Margesin R, Schinner F, Marx JC, Gerday C (eds) Psychrophiles: from biodiversity to biotechnology. Springer, Berlin, pp 31-50.
    • (2007) Psychrophiles: From Biodiversity to Biotechnology , pp. 31-50
    • Miteva, V.1
  • 27
    • 0016805252 scopus 로고
    • Clostridia in soil of the Antarctica
    • Miwa T (1975) Clostridia in soil of the Antarctica. Jpn J Med Sci Biol 28: 201-213.
    • (1975) Jpn J Med Sci Biol , vol.28 , pp. 201-213
    • Miwa, T.1
  • 28
    • 0029853148 scopus 로고    scopus 로고
    • WWW-Query: An on-line retrieval system for biological sequence banks
    • Perrière G, Gouy M (1996) WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie 78: 364-369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1    Gouy, M.2
  • 29
    • 0000505425 scopus 로고
    • Cramér-von Mises statistic
    • S. Kotz, N. L. Johnson, and C. B. Read (Eds.), New York: Wiley
    • Pettitt AN (1982) Cramér-von Mises statistic. In: Kotz S, Johnson NL, Read CB (eds) Encyclopedia of statistical sciences. Wiley, New York, pp 220-221.
    • (1982) Encyclopedia of Statistical Sciences , pp. 220-221
    • Pettitt, A.N.1
  • 30
    • 34247509207 scopus 로고    scopus 로고
    • Potential for mercury reduction by microbes in the high arctic
    • Poulain AJ et al (2007) Potential for mercury reduction by microbes in the high arctic. Appl Environ Microbiol 73: 2230-2238.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2230-2238
    • Poulain, A.J.1
  • 31
    • 0348181691 scopus 로고    scopus 로고
    • Earth's icy biosphere
    • A. T. Bull (Ed.), Washington: American Society for Microbiology
    • Priscu JC, Christner BC (2004) Earth's icy biosphere. In: Bull AT (ed) Microbial diversity and bioprospecting. American Society for Microbiology, Washington, pp 130-145.
    • (2004) Microbial Diversity and Bioprospecting , pp. 130-145
    • Priscu, J.C.1    Christner, B.C.2
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 34
    • 4644275463 scopus 로고    scopus 로고
    • Integration of microbial ecology and statistics: A test to compare gene libraries
    • Schloss PD, Larget BR, Handelsman J (2004) Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70: 5485-5492.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5485-5492
    • Schloss, P.D.1    Larget, B.R.2    Handelsman, J.3
  • 35
    • 12244304186 scopus 로고    scopus 로고
    • Seasonal change in bacterial flora and biomass in mountain snow from the Tateyama Mountains, Japan, analyzed by 16S rRNA gene sequencing and real-time PCR
    • Segawa T, Miyamoto K, Ushida K, Agata K, Okada N, Kohshima S (2005) Seasonal change in bacterial flora and biomass in mountain snow from the Tateyama Mountains, Japan, analyzed by 16S rRNA gene sequencing and real-time PCR. Appl Environ Microbiol 71: 123-130.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 123-130
    • Segawa, T.1    Miyamoto, K.2    Ushida, K.3    Agata, K.4    Okada, N.5    Kohshima, S.6
  • 37
    • 32044458573 scopus 로고    scopus 로고
    • Comparison of microbial community compositions of two subglacial environments reveals a possible role for microbes in chemical weathering processes
    • Skidmore M, Anderson SP, Sharp M, Foght J, Lanoil BD (2005) Comparison of microbial community compositions of two subglacial environments reveals a possible role for microbes in chemical weathering processes. Appl Environ Microbiol 71: 6986-6997.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 6986-6997
    • Skidmore, M.1    Anderson, S.P.2    Sharp, M.3    Foght, J.4    Lanoil, B.D.5
  • 38
    • 0041810378 scopus 로고    scopus 로고
    • Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: Description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov
    • Spring S, Merkhoffer B, Weiss N, Kroppenstedt RM, Hippe H, Stackebrandt E (2003) Characterization of novel psychrophilic clostridia from an Antarctic microbial mat: description of Clostridium frigoris sp. nov., Clostridium lacusfryxellense sp. nov., Clostridium bowmanii sp. nov. and Clostridium psychrophilum sp. nov. and reclassification of Clostridium laramiense as Clostridium estertheticum subsp. laramiense subsp. nov. Int J Syst Evol Microbiol 53: 1019-1029.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1019-1029
    • Spring, S.1    Merkhoffer, B.2    Weiss, N.3    Kroppenstedt, R.M.4    Hippe, H.5    Stackebrandt, E.6
  • 39
    • 16644381656 scopus 로고    scopus 로고
    • Culture-independent analysis of bacterial species from an anaerobic mat from Lake Fryxell, Antarctica: Prokaryotic diversity revisited
    • Stackebrandt E, Brambilla E, Cousin S, Dirks W, Pukall R (2004) Culture-independent analysis of bacterial species from an anaerobic mat from Lake Fryxell, Antarctica: prokaryotic diversity revisited. Cell Mol Biol (Noisy-le-grand) 50: 517-524.
    • (2004) Cell Mol Biol (Noisy-Le-Grand) , vol.50 , pp. 517-524
    • Stackebrandt, E.1    Brambilla, E.2    Cousin, S.3    Dirks, W.4    Pukall, R.5
  • 40
    • 33846212621 scopus 로고    scopus 로고
    • Seasonal and diel changes in photosynthetic activity of the snow alga Chlamydomonas nivalis (Chlorophyceae) from Svalbard determined by pulse amplitude modulation fluorometry
    • Stibal M, Elster J, Sabacka M, Kastovska K (2007) Seasonal and diel changes in photosynthetic activity of the snow alga Chlamydomonas nivalis (Chlorophyceae) from Svalbard determined by pulse amplitude modulation fluorometry. FEMS Microbiol Ecol 59: 265-273.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 265-273
    • Stibal, M.1    Elster, J.2    Sabacka, M.3    Kastovska, K.4
  • 41
    • 0028994541 scopus 로고
    • Sierra Nevada, California, USA, snow algae: Snow albedo changes, algal-bacterial interrelationships, and ultraviolet radiation effects
    • Thomas WH, Duval B (1995) Sierra Nevada, California, USA, snow algae: snow albedo changes, algal-bacterial interrelationships, and ultraviolet radiation effects. Arct Alp Res 27: 389-399.
    • (1995) Arct Alp Res , vol.27 , pp. 389-399
    • Thomas, W.H.1    Duval, B.2
  • 42
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 44
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward DM, Weller R, Bateson MM (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345: 63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 45
    • 33646567509 scopus 로고    scopus 로고
    • Microorganisms in the Malan ice core and their relation to climatic and environmental changes
    • doi: 1010. 1029/2004GB002424
    • Yao TD, Xiang SR, Zhang XJ, Wang NL, Wang YQ (2006) Microorganisms in the Malan ice core and their relation to climatic and environmental changes. Global Biogeochem Cycles 20: GB1004. doi: 1010. 1029/2004GB002424.
    • (2006) Global Biogeochem Cycles 20: GB1004
    • Yao, T.D.1    Xiang, S.R.2    Zhang, X.J.3    Wang, N.L.4    Wang, Y.Q.5


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