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Volumn 6, Issue MAY, 2015, Pages

Two decades of warming increases diversity of a potentially lignolytic bacterial community

Author keywords

Bio Sep beads; Chemically complex carbon; Climate change; In situ enrichment; Lignin degradation; Microbial ecology; Soil organic matter

Indexed keywords

LIGNIN; RNA 16S;

EID: 84931274254     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.00480     Document Type: Article
Times cited : (71)

References (131)
  • 1
    • 0001505064 scopus 로고
    • Predicting long-term patterns of mass loss, nitrogen dynamics, and soil organic matter formation from initial fine litter chemistry in temperate forest ecosystems
    • Aber, J. D., Melillo, J. M., and McClaugherty, C. A. (1990). Predicting long-term patterns of mass loss, nitrogen dynamics, and soil organic matter formation from initial fine litter chemistry in temperate forest ecosystems. Botany 68, 2201-2208. doi: 10.1139/b90-287.
    • (1990) Botany , vol.68 , pp. 2201-2208
    • Aber, J.D.1    Melillo, J.M.2    McClaugherty, C.A.3
  • 2
    • 77952368547 scopus 로고    scopus 로고
    • Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders
    • Ahmad, M., Taylor, C. R., Pink, D., Burton, K., Eastwood, D., Bending, G. D., et al. (2010). Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders. Mol. Biosyst. 6, 815-821. doi: 10.1039/b908966g.
    • (2010) Mol. Biosyst , vol.6 , pp. 815-821
    • Ahmad, M.1    Taylor, C.R.2    Pink, D.3    Burton, K.4    Eastwood, D.5    Bending, G.D.6
  • 3
    • 77952004559 scopus 로고    scopus 로고
    • Soil-carbon response to warming dependent on microbial physiology
    • Allison, S. D., Wallenstein, M., and Bradford, M. A. (2010). Soil-carbon response to warming dependent on microbial physiology. Nat. Geosci. 3, 336-340. doi: 10.1038/ngeo846.
    • (2010) Nat. Geosci , vol.3 , pp. 336-340
    • Allison, S.D.1    Wallenstein, M.2    Bradford, M.A.3
  • 4
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson, M. J. (2001). A new method for non-parametric multivariate analysis of variance. Austral Ecol. 26, 32-46. doi: 10.1111/j.1442-9993.2001.01070.pp.x.
    • (2001) Austral Ecol , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 5
    • 10744231694 scopus 로고    scopus 로고
    • Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer
    • Anderson, R. T., Vrionis, H. A., Ortiz-Bernad, I., Resch, C. T., Long, P. E., Dayvault, R., et al. (2003). Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer. Appl. Environ. Microbiol. 69, 5884-5891. doi: 10.1128/AEM.69.10.5884-5891.2003.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 5884-5891
    • Anderson, R.T.1    Vrionis, H.A.2    Ortiz-Bernad, I.3    Resch, C.T.4    Long, P.E.5    Dayvault, R.6
  • 7
    • 84884551854 scopus 로고    scopus 로고
    • Measuring phenol oxidase and peroxidase activities with pyrogallol, l-DOPA, and ABTS: effect of assay conditions and soil type
    • Bach, C., Warnock, D., Van Horn, D., Weintraub, M. N., Sinsabaugh, R., Allison, S. D., et al. (2013). Measuring phenol oxidase and peroxidase activities with pyrogallol, l-DOPA, and ABTS: effect of assay conditions and soil type. Soil Biol. Biochem. 67, 183-191. doi: 10.1016/j.soilbio.2013.08.022.
    • (2013) Soil Biol. Biochem , vol.67 , pp. 183-191
    • Bach, C.1    Warnock, D.2    Van Horn, D.3    Weintraub, M.N.4    Sinsabaugh, R.5    Allison, S.D.6
  • 8
    • 84855937877 scopus 로고    scopus 로고
    • Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
    • Baldrian, P., Kolarík, M., Štursová, M., Kopeckỳ, J., Valášková, V., Větrovskỳ, T., et al. (2012). Active and total microbial communities in forest soil are largely different and highly stratified during decomposition. ISME J. 6, 248-258. doi: 10.1038/ismej.2011.95.
    • (2012) ISME J , vol.6 , pp. 248-258
    • Baldrian, P.1    Kolarík, M.2    Štursová, M.3    Kopeckỳ, J.4    Valášková, V.5    Větrovskỳ, T.6
  • 9
    • 84871811486 scopus 로고    scopus 로고
    • Responses of the extracellular enzyme activities in hardwood forest to soil temperature and seasonality and the potential effects of climate change
    • Baldrian, P., Šnajdr, J., Merhautová, V., Dobiášová, P., Cajthaml, T., and Valášková, V. (2013). Responses of the extracellular enzyme activities in hardwood forest to soil temperature and seasonality and the potential effects of climate change. Soil Biol. Biochem. 56, 60-68. doi: 10.1016/j.soilbio.2012.01.020.
    • (2013) Soil Biol. Biochem , vol.56 , pp. 60-68
    • Baldrian, P.1    Šnajdr, J.2    Merhautová, V.3    Dobiášová, P.4    Cajthaml, T.5    Valášková, V.6
  • 10
    • 40149092011 scopus 로고    scopus 로고
    • Multilevel samplers as microcosms to assess microbial response to biostimulation
    • Baldwin, B. R., Peacock, A. D., Park, M., Ogles, D. M., Istok, J. D., McKinley, J. P., et al. (2008). Multilevel samplers as microcosms to assess microbial response to biostimulation. Groundwater 46, 295-304. doi: 10.1111/j.1745-6584.2007.00411.x.
    • (2008) Groundwater , vol.46 , pp. 295-304
    • Baldwin, B.R.1    Peacock, A.D.2    Park, M.3    Ogles, D.M.4    Istok, J.D.5    McKinley, J.P.6
  • 11
    • 85013722564 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B Methodol. 57, 289-300.
    • (1995) J. R. Stat. Soc. Ser. B Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 12
    • 0037313539 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities
    • Blackwood, C. B., Marsh, T., Kim, S.-H., and Paul, E. A. (2003). Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities. Appl. Environ. Microbiol. 69, 926-932. doi: 10.1128/AEM.69.2.926-932.2003.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 926-932
    • Blackwood, C.B.1    Marsh, T.2    Kim, S.-H.3    Paul, E.A.4
  • 13
    • 23744460935 scopus 로고    scopus 로고
    • Living in a fungal world: impact of fungi on soil bacterial niche development
    • Boer, W., de Folman, L. B., Summerbell, R. C., and Boddy, L. (2005). Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol. Rev. 29, 795-811. doi: 10.1016/j.femsre.2004.11.005.
    • (2005) FEMS Microbiol. Rev , vol.29 , pp. 795-811
    • Boer, W.1    de Folman, L.B.2    Summerbell, R.C.3    Boddy, L.4
  • 16
  • 17
    • 55649090339 scopus 로고    scopus 로고
    • Thermal adaptation of soil microbial respiration to elevated temperature
    • Bradford, M. A., Davies, C. A., Frey, S. D., Maddox, T. R., Melillo, J. M., Mohan, J. E., et al. (2008). Thermal adaptation of soil microbial respiration to elevated temperature. Ecol. Lett. 11, 1316-1327. doi: 10.1111/j.1461-0248.2008.01251.x.
    • (2008) Ecol. Lett , vol.11 , pp. 1316-1327
    • Bradford, M.A.1    Davies, C.A.2    Frey, S.D.3    Maddox, T.R.4    Melillo, J.M.5    Mohan, J.E.6
  • 18
    • 77953117677 scopus 로고    scopus 로고
    • Thermal adaptation of heterotrophic soil respiration in laboratory microcosms
    • Bradford, M. A., Watts, B. W., and Davies, C. A. (2010). Thermal adaptation of heterotrophic soil respiration in laboratory microcosms. Glob. Change Biol. 16, 1576-1588. doi: 10.1111/j.1365-2486.2009.02040.x.
    • (2010) Glob. Change Biol , vol.16 , pp. 1576-1588
    • Bradford, M.A.1    Watts, B.W.2    Davies, C.A.3
  • 19
    • 79955761627 scopus 로고    scopus 로고
    • The emerging role for bacteria in lignin degradation and bio-product formation
    • Bugg, T. D., Ahmad, M., Hardiman, E. M., and Singh, R. (2011a). The emerging role for bacteria in lignin degradation and bio-product formation. Curr. Opin. Biotechnol. 22, 394-400. doi: 10.1016/j.copbio.2010.10.009.
    • (2011) Curr. Opin. Biotechnol , vol.22 , pp. 394-400
    • Bugg, T.D.1    Ahmad, M.2    Hardiman, E.M.3    Singh, R.4
  • 20
    • 81355123362 scopus 로고    scopus 로고
    • Pathways for degradation of lignin in bacteria and fungi
    • Bugg, T. D. H., Ahmad, M., Hardiman, E. M., and Rahmanpour, R. (2011b). Pathways for degradation of lignin in bacteria and fungi. Nat. Prod. Rep. 28, 1883-1896. doi: 10.1039/c1np00042j.
    • (2011) Nat. Prod. Rep , vol.28 , pp. 1883-1896
    • Bugg, T.D.H.1    Ahmad, M.2    Hardiman, E.M.3    Rahmanpour, R.4
  • 21
    • 72949118701 scopus 로고    scopus 로고
    • Associations between species and groups of sites: indices and statistical inference
    • Cáceres, M. D., and Legendre, P. (2009). Associations between species and groups of sites: indices and statistical inference. Ecology 90, 3566-3574. doi: 10.1890/08-1823.1.
    • (2009) Ecology , vol.90 , pp. 3566-3574
    • Cáceres, M.D.1    Legendre, P.2
  • 22
    • 84875533242 scopus 로고    scopus 로고
    • Phylogenetic diversity promotes ecosystem stability
    • Cadotte, M. W., Dinnage, R., and Tilman, D. (2012). Phylogenetic diversity promotes ecosystem stability. Ecology 93, S223-S233. doi: 10.1890/11-0426.1.
    • (2012) Ecology , vol.93 , pp. S223-S233
    • Cadotte, M.W.1    Dinnage, R.2    Tilman, D.3
  • 27
    • 33846189311 scopus 로고    scopus 로고
    • Characterisation and optimisation of three potential aerobic bacterial strains for kraft lignin degradation from pulp paper waste
    • Chandra, R., Raj, A., Purohit, H. J., and Kapley, A. (2007). Characterisation and optimisation of three potential aerobic bacterial strains for kraft lignin degradation from pulp paper waste. Chemosphere 67, 839-846. doi: 10.1016/j.chemosphere.2006.10.011.
    • (2007) Chemosphere , vol.67 , pp. 839-846
    • Chandra, R.1    Raj, A.2    Purohit, H.J.3    Kapley, A.4
  • 28
    • 60749125245 scopus 로고    scopus 로고
    • Isolation and characterization of bacterial strains Paenibacillus sp. and Bacillus sp. for kraft lignin decolorization from pulp paper mill waste
    • Chandra, R., Singh, S., Krishna Reddy, M. M., Patel, D. K., Purohit, H. J., and Kapley, A. (2008). Isolation and characterization of bacterial strains Paenibacillus sp. and Bacillus sp. for kraft lignin decolorization from pulp paper mill waste. J. Gen. Appl. Microbiol. 54, 399-407. doi: 10.2323/jgam.54.399.
    • (2008) J. Gen. Appl. Microbiol , vol.54 , pp. 399-407
    • Chandra, R.1    Singh, S.2    Krishna Reddy, M.M.3    Patel, D.K.4    Purohit, H.J.5    Kapley, A.6
  • 29
    • 84885377795 scopus 로고    scopus 로고
    • A 24.7-kDa copper-containing oxidase, secreted by Thermobifida fusca, significantly increasing the xylanase/cellulase-catalyzed hydrolysis of sugarcane bagasse
    • Chen, C.-Y., Hsieh, Z.-S., Cheepudom, J., Yang, C.-H., and Meng, M. (2013). A 24.7-kDa copper-containing oxidase, secreted by Thermobifida fusca, significantly increasing the xylanase/cellulase-catalyzed hydrolysis of sugarcane bagasse. Appl. Microbiol. Biotechnol. 97, 8977-8986. doi: 10.1007/s00253-013-4727-y.
    • (2013) Appl. Microbiol. Biotechnol , vol.97 , pp. 8977-8986
    • Chen, C.-Y.1    Hsieh, Z.-S.2    Cheepudom, J.3    Yang, C.-H.4    Meng, M.5
  • 30
    • 0342813011 scopus 로고    scopus 로고
    • In situ reverse transcription, an approach to characterize genetic diversity and activities of prokaryotes
    • Chen, F., Gonzalez, J. M., Dustman, W. A., Moran, M. A., and Hodson, R. E. (1997). In situ reverse transcription, an approach to characterize genetic diversity and activities of prokaryotes. Appl. Environ. Microbiol. 63, 4907-4913.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 4907-4913
    • Chen, F.1    Gonzalez, J.M.2    Dustman, W.A.3    Moran, M.A.4    Hodson, R.E.5
  • 31
    • 84862815347 scopus 로고    scopus 로고
    • Biodegradation of kraft lignin by a bacterial strain Comamonas sp. B-9 isolated from eroded bamboo slips
    • Chen, Y. H., Chai, L. Y., Zhu, Y. H., Yang, Z. H., Zheng, Y., and Zhang, H. (2012). Biodegradation of kraft lignin by a bacterial strain Comamonas sp. B-9 isolated from eroded bamboo slips. J. Appl. Microbiol. 112, 900-906. doi: 10.1111/j.1365-2672.2012.05275.x.
    • (2012) J. Appl. Microbiol , vol.112 , pp. 900-906
    • Chen, Y.H.1    Chai, L.Y.2    Zhu, Y.H.3    Yang, Z.H.4    Zheng, Y.5    Zhang, H.6
  • 32
    • 80053500787 scopus 로고    scopus 로고
    • Temperature and soil organic matter decomposition rates-synthesis of current knowledge and a way forward
    • Conant, R. T., Ryan, M. G., Ågren, G. I., Birge, H. E., Davidson, E. A., Eliasson, P. E., et al. (2011). Temperature and soil organic matter decomposition rates-synthesis of current knowledge and a way forward. Glob. Change Biol. 17, 3392-3404. doi: 10.1111/j.1365-2486.2011.02496.x.
    • (2011) Glob. Change Biol , vol.17 , pp. 3392-3404
    • Conant, R.T.1    Ryan, M.G.2    Ågren, G.I.3    Birge, H.E.4    Davidson, E.A.5    Eliasson, P.E.6
  • 33
    • 84908528501 scopus 로고    scopus 로고
    • Microbial community structure mediates response of soil C decomposition to litter addition and warming
    • Creamer, C. A., de Menezes, A. B., Krull, E. S., Sanderman, J., Newton-Walters, R., and Farrell, M. (2015). Microbial community structure mediates response of soil C decomposition to litter addition and warming. Soil Biol. Biochem. 80, 175-188. doi: 10.1016/j.soilbio.2014.10.008.
    • (2015) Soil Biol. Biochem , vol.80 , pp. 175-188
    • Creamer, C.A.1    de Menezes, A.B.2    Krull, E.S.3    Sanderman, J.4    Newton-Walters, R.5    Farrell, M.6
  • 34
    • 33644866828 scopus 로고    scopus 로고
    • Temperature sensitivity of soil carbon decomposition and feedbacks to climate change
    • Davidson, E. A., and Janssens, I. A. (2006). Temperature sensitivity of soil carbon decomposition and feedbacks to climate change. Nature 440, 165-173. doi: 10.1038/nature04514.
    • (2006) Nature , vol.440 , pp. 165-173
    • Davidson, E.A.1    Janssens, I.A.2
  • 35
    • 79955783694 scopus 로고    scopus 로고
    • Characterization of trapped lignin-degrading microbes in tropical forest soil
    • DeAngelis, K. M., Allgaier, M., Chavarria, Y., Fortney, J. L., Hugenholtz, P., Simmons, B., et al. (2011). Characterization of trapped lignin-degrading microbes in tropical forest soil. PLoS ONE 6:e19306. doi: 10.1371/journal.pone.0019306.
    • (2011) PLoS ONE , vol.6
    • DeAngelis, K.M.1    Allgaier, M.2    Chavarria, Y.3    Fortney, J.L.4    Hugenholtz, P.5    Simmons, B.6
  • 36
    • 84927550701 scopus 로고    scopus 로고
    • Long-term forest soil warming alters microbial communities in temperate forest soils
    • DeAngelis, K. M., Pold, G., Topcuoglu, B. D., van Diepen, L. T. A., Varney, R., Blanchard, J., et al. (2015). Long-term forest soil warming alters microbial communities in temperate forest soils. Terr. Microbiol. 6:104. doi: 10.3389/fmicb.2015.00104.
    • (2015) Terr. Microbiol , vol.6 , pp. 104
    • DeAngelis, K.M.1    Pold, G.2    Topcuoglu, B.D.3    van Diepen, L.T.A.4    Varney, R.5    Blanchard, J.6
  • 37
    • 84885399961 scopus 로고    scopus 로고
    • Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1
    • DeAngelis, K. M., Sharma, D., Varney, R., Simmons, B., Isern, N. G., Markilllie, L. M., et al. (2013). Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1. Front. Microbiol. 4:280. doi: 10.3389/fmicb.2013.00280.
    • (2013) Front. Microbiol , vol.4 , pp. 280
    • DeAngelis, K.M.1    Sharma, D.2    Varney, R.3    Simmons, B.4    Isern, N.G.5    Markilllie, L.M.6
  • 38
    • 77952423292 scopus 로고    scopus 로고
    • Microbial communities acclimate to recurring changes in soil redox potential status
    • DeAngelis, K. M., Silver, W. L., Thompson, A. W., and Firestone, M. K. (2010). Microbial communities acclimate to recurring changes in soil redox potential status. Environ. Microbiol. 12, 3137-3149. doi: 10.1111/j.1462-2920.2010.02286.x.
    • (2010) Environ. Microbiol , vol.12 , pp. 3137-3149
    • DeAngelis, K.M.1    Silver, W.L.2    Thompson, A.W.3    Firestone, M.K.4
  • 39
    • 33644942303 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of bacteria community composition in an acidic sphagnum peat bog
    • Dedysh, S. N., Pankratov, T. A., Belova, S. E., Kulichevskaya, I. S., and Liesack, W. (2006). Phylogenetic analysis and in situ identification of bacteria community composition in an acidic sphagnum peat bog. Appl. Environ. Microbiol. 72, 2110-2117. doi: 10.1128/AEM.72.3.2110-2117.2006.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 2110-2117
    • Dedysh, S.N.1    Pankratov, T.A.2    Belova, S.E.3    Kulichevskaya, I.S.4    Liesack, W.5
  • 40
    • 29144520930 scopus 로고    scopus 로고
    • Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol-degrading soil microbial community
    • DeRito, C. M., Pumphrey, G. M., and Madsen, E. L. (2005). Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol-degrading soil microbial community. Appl. Environ. Microbiol. 71, 7858-7865. doi: 10.1128/AEM.71.12.7858-7865.2005.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 7858-7865
    • DeRito, C.M.1    Pumphrey, G.M.2    Madsen, E.L.3
  • 42
    • 0033834871 scopus 로고    scopus 로고
    • Decomposition of rice straw and microbial carbon use efficiency under different soil temperatures and moistures
    • Devêvre, O. C., and Horwáth, W. R. (2000). Decomposition of rice straw and microbial carbon use efficiency under different soil temperatures and moistures. Soil Biol. Biochem. 32, 1773-1785. doi: 10.1016/S0038-0717(00)00096-1.
    • (2000) Soil Biol. Biochem , vol.32 , pp. 1773-1785
    • Devêvre, O.C.1    Horwáth, W.R.2
  • 43
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R. C. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461. doi: 10.1093/bioinformatics/btq461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 44
    • 84908374391 scopus 로고    scopus 로고
    • 2 production increases with increasing carbon substrate uptake rate
    • 2 production increases with increasing carbon substrate uptake rate. Soil Biol. Biochem. 80, 45-52. doi: 10.1016/j.soilbio.2014.09.021.
    • (2015) Soil Biol. Biochem , vol.80 , pp. 45-52
    • Erhagen, B.1    Ilstedt, U.2    Nilsson, M.B.3
  • 45
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith, D. P. (1992). Conservation evaluation and phylogenetic diversity. Biol. Conserv. 61, 1-10. doi: 10.1016/0006-3207(92)91201-3.
    • (1992) Biol. Conserv , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 46
    • 79551490977 scopus 로고    scopus 로고
    • Experimentally simulated global warming and nitrogen enrichment effects on microbial litter decomposers in a marsh
    • Flury, S., and Gessner, M. O. (2011). Experimentally simulated global warming and nitrogen enrichment effects on microbial litter decomposers in a marsh. Appl. Environ. Microbiol. 77, 803-809. doi: 10.1128/AEM.01527-10.
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 803-809
    • Flury, S.1    Gessner, M.O.2
  • 47
    • 0038346093 scopus 로고    scopus 로고
    • The priming effect of organic matter: a question of microbial competition?
    • Fontaine, S., Mariotti, A., and Abbadie, L. (2003). The priming effect of organic matter: a question of microbial competition? Soil Biol. Biochem. 35, 837-843. doi: 10.1016/S0038-0717(03)00123-8.
    • (2003) Soil Biol. Biochem , vol.35 , pp. 837-843
    • Fontaine, S.1    Mariotti, A.2    Abbadie, L.3
  • 49
    • 53449089620 scopus 로고    scopus 로고
    • Microbial biomass, functional capacity, and community structure after 12 years of soil warming
    • Frey, S. D., Drijber, R., Smith, H., and Melillo, J. (2008). Microbial biomass, functional capacity, and community structure after 12 years of soil warming. Soil Biol. Biochem. 40, 2904-2907. doi: 10.1016/j.soilbio.2008.07.020.
    • (2008) Soil Biol. Biochem , vol.40 , pp. 2904-2907
    • Frey, S.D.1    Drijber, R.2    Smith, H.3    Melillo, J.4
  • 50
    • 84875756703 scopus 로고    scopus 로고
    • Soil carbon cycling: the temperature response of microbial efficiency and its feedback to climate
    • Frey, S. D., Lee, J., Melillo, J. M., and Six, J. (2013). Soil carbon cycling: the temperature response of microbial efficiency and its feedback to climate. Nat. Clim. Change 3, 395-398. doi: 10.1038/nclimate1796.
    • (2013) Nat. Clim. Change , vol.3 , pp. 395-398
    • Frey, S.D.1    Lee, J.2    Melillo, J.M.3    Six, J.4
  • 51
    • 84896934614 scopus 로고    scopus 로고
    • Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway
    • Gall, D. L., Kim, H., Lu, F., Donohue, T. J., Noguera, D. R., and Ralph, J. (2014). Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway. J. Biol. Chem. 289, 8656-8667. doi: 10.1074/jbc.M113.536250.
    • (2014) J. Biol. Chem , vol.289 , pp. 8656-8667
    • Gall, D.L.1    Kim, H.2    Lu, F.3    Donohue, T.J.4    Noguera, D.R.5    Ralph, J.6
  • 52
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts
    • Gardes, M., and Bruns, T. D. (1993). ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol. Ecol. 2, 113-118. doi: 10.1111/j.1365-294X.1993.tb00005.x.
    • (1993) Mol. Ecol , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 54
    • 59649107848 scopus 로고    scopus 로고
    • Purification and partial characterization of lignin peroxidase from Acinetobacter calcoaceticus NCIM 2890 and its application in decolorization of textile dyes
    • Ghodake, G. S., Kalme, S. D., Jadhav, J. P., and Govindwar, S. P. (2009). Purification and partial characterization of lignin peroxidase from Acinetobacter calcoaceticus NCIM 2890 and its application in decolorization of textile dyes. Appl. Biochem. Biotechnol. 152, 6-14. doi: 10.1007/s12010-008-8258-4.
    • (2009) Appl. Biochem. Biotechnol , vol.152 , pp. 6-14
    • Ghodake, G.S.1    Kalme, S.D.2    Jadhav, J.P.3    Govindwar, S.P.4
  • 55
    • 80053569422 scopus 로고    scopus 로고
    • Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance
    • Goldfarb, K. C., Karaoz, U., Hanson, C. A., Santee, C. A., Bradford, M. A., Treseder, K. K., et al. (2011). Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance. Front. Microbiol. 2:94. doi: 10.3389/fmicb.2011.00094.
    • (2011) Front. Microbiol , vol.2 , pp. 94
    • Goldfarb, K.C.1    Karaoz, U.2    Hanson, C.A.3    Santee, C.A.4    Bradford, M.A.5    Treseder, K.K.6
  • 56
    • 0023031820 scopus 로고
    • Comparative growth of natural bacterial isolates on various lignin-related compounds
    • Gonzalez, B., Merino, A., Almeida, M., and Vicna, R. (1986). Comparative growth of natural bacterial isolates on various lignin-related compounds. Appl. Environ. Microbiol. 52, 1428-1432.
    • (1986) Appl. Environ. Microbiol , vol.52 , pp. 1428-1432
    • Gonzalez, B.1    Merino, A.2    Almeida, M.3    Vicna, R.4
  • 57
    • 0029659242 scopus 로고    scopus 로고
    • Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture
    • González, J. M., Whitman, W. B., Hodson, R. E., and Moran, M. A. (1996). Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture. Appl. Environ. Microbiol. 62, 4433-4440.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 4433-4440
    • González, J.M.1    Whitman, W.B.2    Hodson, R.E.3    Moran, M.A.4
  • 58
    • 0034974873 scopus 로고    scopus 로고
    • Batch and continuous studies on treatment of pulp mill wastewater by Aeromonas formicans
    • Gupta, V. K., Minocha, A. K., and Jain, N. (2001). Batch and continuous studies on treatment of pulp mill wastewater by Aeromonas formicans. J. Chem. Technol. Biotechnol. 76, 547-552. doi: 10.1002/jctb.417.
    • (2001) J. Chem. Technol. Biotechnol , vol.76 , pp. 547-552
    • Gupta, V.K.1    Minocha, A.K.2    Jain, N.3
  • 59
    • 79952006773 scopus 로고    scopus 로고
    • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • Haas, B. J., Gevers, D., Earl, A. M., Feldgarden, M., Ward, D. V., Giannoukos, G., et al. (2011). Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res. 21, 494-504. doi: 10.1101/gr.112730.110.
    • (2011) Genome Res , vol.21 , pp. 494-504
    • Haas, B.J.1    Gevers, D.2    Earl, A.M.3    Feldgarden, M.4    Ward, D.V.5    Giannoukos, G.6
  • 60
    • 84908161496 scopus 로고    scopus 로고
    • Synergy of crude enzyme cocktail from cold-adapted Cladosporium cladosporioides Ch2-2 with commercial xylanase achieving high sugars yield at low cost
    • Ji, L., Yang, J., Fan, H., Yang, Y., Li, B., Yu, X., et al. (2014). Synergy of crude enzyme cocktail from cold-adapted Cladosporium cladosporioides Ch2-2 with commercial xylanase achieving high sugars yield at low cost. Biotechnol. Biofuels 7, 130. doi: 10.1186/s13068-014-0130-x.
    • (2014) Biotechnol. Biofuels , vol.7 , pp. 130
    • Ji, L.1    Yang, J.2    Fan, H.3    Yang, Y.4    Li, B.5    Yu, X.6
  • 61
    • 0043272180 scopus 로고    scopus 로고
    • The vertical distribution of soil organic carbon and its relation to climate and vegetation
    • Jobbágy, E. G., and Jackson, R. B. (2000). The vertical distribution of soil organic carbon and its relation to climate and vegetation. Ecol. Appl. 10, 423-436. doi: 10.1890/1051-0761(2000)010[0423:TVDOSO]2.0.CO;2.
    • (2000) Ecol. Appl , vol.10 , pp. 423-436
    • Jobbágy, E.G.1    Jackson, R.B.2
  • 62
    • 33646876613 scopus 로고    scopus 로고
    • Entropy and diversity
    • Jost, L. (2006). Entropy and diversity. Oikos 113, 363-375. doi: 10.1111/j.2006.0030-1299.14714.x.
    • (2006) Oikos , vol.113 , pp. 363-375
    • Jost, L.1
  • 63
    • 84877864026 scopus 로고    scopus 로고
    • 'Streptomyces'
    • eds W. B. Whitman, M. Goodfellow, P. Kämpfer, H.-J. Busse, M. E. Trujillo, W. Ludwig, K.-i. Suzuki, and A. Parte (New York, NY: Springer)
    • Kampfer, P. (2012). "Streptomyces," in Bergey's Manual of Systematic Bacteriology: The Actinobacteria, Part A, eds W. B. Whitman, M. Goodfellow, P. Kämpfer, H.-J. Busse, M. E. Trujillo, W. Ludwig, K.-i. Suzuki, and A. Parte (New York, NY: Springer), 1455-1475.
    • (2012) Bergey's Manual of Systematic Bacteriology: The Actinobacteria, Part A , pp. 1455-1475
    • Kampfer, P.1
  • 65
    • 0004845283 scopus 로고
    • Isolation of a bacterium capable of degrading peanut hull lignin
    • Kerr, T. J., Kerr, R. D., and Benner, R. (1983). Isolation of a bacterium capable of degrading peanut hull lignin. Appl. Environ. Microbiol. 46, 1201-1206.
    • (1983) Appl. Environ. Microbiol , vol.46 , pp. 1201-1206
    • Kerr, T.J.1    Kerr, R.D.2    Benner, R.3
  • 66
    • 68349104169 scopus 로고    scopus 로고
    • Effect of oxidized leachate on degradation of lignin by sulfate-reducing bacteria
    • Kim, J.-H., Kim, M., and Bae, W. (2009). Effect of oxidized leachate on degradation of lignin by sulfate-reducing bacteria. Waste Manag. Res. 27, 520-526. doi: 10.1177/0734242X08096899.
    • (2009) Waste Manag. Res , vol.27 , pp. 520-526
    • Kim, J.-H.1    Kim, M.2    Bae, W.3
  • 67
    • 0036729772 scopus 로고    scopus 로고
    • Influence of elevated CO(2) on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis
    • Klamer, M., Roberts, M. S., Levine, L. H., Drake, B. G., and Garland, J. L. (2002). Influence of elevated CO(2) on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 68, 4370-4376. doi: 10.1128/AEM.68.9.4370-4376.2002.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 4370-4376
    • Klamer, M.1    Roberts, M.S.2    Levine, L.H.3    Drake, B.G.4    Garland, J.L.5
  • 68
    • 77956723631 scopus 로고    scopus 로고
    • Faunal activities and soil processes: adaptive strategies that determine ecosystem function
    • Lavelle, P. (1997). Faunal activities and soil processes: adaptive strategies that determine ecosystem function. Adv. Ecol. Res. 27, 93-132. doi: 10.1016/S0065-2504(08)60007-0.
    • (1997) Adv. Ecol. Res , vol.27 , pp. 93-132
    • Lavelle, P.1
  • 69
    • 0034782218 scopus 로고    scopus 로고
    • Ecologically meaningful transformations for ordination of species data
    • Legendre, P., and Gallagher, E. D. (2001). Ecologically meaningful transformations for ordination of species data. Oecologia 129, 271-280. doi: 10.1007/s004420100716.
    • (2001) Oecologia , vol.129 , pp. 271-280
    • Legendre, P.1    Gallagher, E.D.2
  • 70
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    • Letunic, I., and Bork, P. (2007). Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23, 127-128. doi: 10.1093/bioinformatics/btl529.
    • (2007) Bioinformatics , vol.23 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 71
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone, C., and Knight, R. (2005). UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235. doi: 10.1128/AEM.71.12.8228-8235.2005.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 72
    • 84876109062 scopus 로고    scopus 로고
    • Responses of ecosystem carbon cycle to experimental warming: a meta-analysis
    • Lu, M., Zhou, X., Yang, Q., Li, H., Luo, Y., Fang, C., et al. (2013). Responses of ecosystem carbon cycle to experimental warming: a meta-analysis. Ecology 94, 726-738. doi: 10.1890/12-0279.1.
    • (2013) Ecology , vol.94 , pp. 726-738
    • Lu, M.1    Zhou, X.2    Yang, Q.3    Li, H.4    Luo, Y.5    Fang, C.6
  • 73
    • 80054913451 scopus 로고    scopus 로고
    • FLASH: fast length adjustment of short reads to improve genome assemblies
    • Magoč, T., and Salzberg, S. L. (2011). FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957-2963. doi: 10.1093/bioinformatics/btr507.
    • (2011) Bioinformatics , vol.27 , pp. 2957-2963
    • Magoč, T.1    Salzberg, S.L.2
  • 75
    • 84865549119 scopus 로고    scopus 로고
    • Environmental and stoichiometric controls on microbial carbon-use efficiency in soils
    • Manzoni, S., Taylor, P., Richter, A., Porporato, A., and Ågren, G. I. (2012). Environmental and stoichiometric controls on microbial carbon-use efficiency in soils. New Phytol. 196, 79-91. doi: 10.1111/j.1469-8137.2012.04225.x.
    • (2012) New Phytol , vol.196 , pp. 79-91
    • Manzoni, S.1    Taylor, P.2    Richter, A.3    Porporato, A.4    Ågren, G.I.5
  • 76
    • 84857122937 scopus 로고    scopus 로고
    • An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
    • McDonald, D., Price, M. N., Goodrich, J., Nawrocki, E. P., DeSantis, T. Z., Probst, A., et al. (2012). An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 6, 610-618. doi: 10.1038/ismej.2011.139.
    • (2012) ISME J , vol.6 , pp. 610-618
    • McDonald, D.1    Price, M.N.2    Goodrich, J.3    Nawrocki, E.P.4    DeSantis, T.Z.5    Probst, A.6
  • 78
    • 84876427223 scopus 로고    scopus 로고
    • phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
    • McMurdie, P. J., and Holmes, S. (2013). phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE 8:e61217. doi: 10.1371/journal.pone.0061217.
    • (2013) PLoS ONE , vol.8
    • McMurdie, P.J.1    Holmes, S.2
  • 79
    • 18744408114 scopus 로고    scopus 로고
    • Soil warming and carbon-cycle feedbacks to the climate system
    • Melillo, J. M., Steudler, P. A., Aber, J. D., Newkirk, K. M., Lux, H., Bowles, F. P., et al. (2002). Soil warming and carbon-cycle feedbacks to the climate system. Science 298, 2173-2176. doi: 10.1126/science.1074153.
    • (2002) Science , vol.298 , pp. 2173-2176
    • Melillo, J.M.1    Steudler, P.A.2    Aber, J.D.3    Newkirk, K.M.4    Lux, H.5    Bowles, F.P.6
  • 80
    • 84931276375 scopus 로고    scopus 로고
    • Prospect hill soil warming experiment at harvard forest since 1991
    • (Accessed March 11, 2014)
    • Melillo, J. M., Steudler, P. A., and Mohan, J. E. (1999). Prospect hill soil warming experiment at harvard forest since 1991. Harv. For. Data Arch. Available online at: http://harvardforest.fas.harvard.edu:8080/exist/apps/datasets/showData.html?id=hf005 (Accessed March 11, 2014).
    • (1999) Harv. For. Data Arch
    • Melillo, J.M.1    Steudler, P.A.2    Mohan, J.E.3
  • 81
    • 84868559784 scopus 로고    scopus 로고
    • Sphingobium sp. SYK-6 LigG involved in lignin degradation is structurally and biochemically related to the glutathione transferase ?. class
    • Meux, E., Prosper, P., Masai, E., Mulliert, G., Dumarçay, S., Morel, M., et al. (2012). Sphingobium sp. SYK-6 LigG involved in lignin degradation is structurally and biochemically related to the glutathione transferase ? class. FEBS Lett. 586, 3944-3950. doi: 10.1016/j.febslet.2012.09.036.
    • (2012) FEBS Lett , vol.586 , pp. 3944-3950
    • Meux, E.1    Prosper, P.2    Masai, E.3    Mulliert, G.4    Dumarçay, S.5    Morel, M.6
  • 82
    • 51549116257 scopus 로고    scopus 로고
    • Application of 13C-labeled litter and root materials for in situ decomposition studies using phospholipid fatty acids
    • Moore-Kucera, J., and Dick, R. P. (2008). Application of 13C-labeled litter and root materials for in situ decomposition studies using phospholipid fatty acids. Soil Biol. Biochem. 40, 2485-2493. doi: 10.1016/j.soilbio.2008.06.002.
    • (2008) Soil Biol. Biochem , vol.40 , pp. 2485-2493
    • Moore-Kucera, J.1    Dick, R.P.2
  • 83
    • 0028853698 scopus 로고
    • Isolation of a lignin-decolorizing bacterium
    • Morii, H., Nakamiya, K., and Kinoshita, S. (1995). Isolation of a lignin-decolorizing bacterium. J. Ferment. Bioeng. 80, 296-299. doi: 10.1016/0922-338X(95)90835-N.
    • (1995) J. Ferment. Bioeng , vol.80 , pp. 296-299
    • Morii, H.1    Nakamiya, K.2    Kinoshita, S.3
  • 85
    • 0004848890 scopus 로고
    • Poplar lignin decomposition by gram-negative aerobic bacteria
    • Odier, E., Janin, G., and Monties, B. (1981). Poplar lignin decomposition by gram-negative aerobic bacteria. Appl. Environ. Microbiol. 41, 337-341.
    • (1981) Appl. Environ. Microbiol , vol.41 , pp. 337-341
    • Odier, E.1    Janin, G.2    Monties, B.3
  • 86
    • 0017953578 scopus 로고
    • Biodegradation de la lignine de ble par Xanthomonas 23
    • Odier, E., and Monties, B. (1978). Biodegradation de la lignine de ble par Xanthomonas 23. Ann. Microbiol. 129A, 361-377.
    • (1978) Ann. Microbiol , vol.129A , pp. 361-377
    • Odier, E.1    Monties, B.2
  • 88
    • 79954836098 scopus 로고    scopus 로고
    • Establishment and characterization of atrazine degrading cultures from Nigerian agricultural soil using traditional and Bio-Sep bead enrichment techniques
    • Omotayo, A. E., Ilori, M. O., Amund, O. O., Ghosh, D., Roy, K., and Radosevich, M. (2011). Establishment and characterization of atrazine degrading cultures from Nigerian agricultural soil using traditional and Bio-Sep bead enrichment techniques. Appl. Soil Ecol. 48, 63-70. doi: 10.1016/j.apsoil.2011.01.006.
    • (2011) Appl. Soil Ecol , vol.48 , pp. 63-70
    • Omotayo, A.E.1    Ilori, M.O.2    Amund, O.O.3    Ghosh, D.4    Roy, K.5    Radosevich, M.6
  • 89
    • 79956119286 scopus 로고
    • A modified preparation of the universal buffer described by Teorell and Stenhagen
    • Östling, S., and Virtama, P. (1946). A modified preparation of the universal buffer described by Teorell and Stenhagen. Acta Physiol. Scand. 11, 289-293. doi: 10.1111/j.1748-1716.1946.tb00349.x.
    • (1946) Acta Physiol. Scand , vol.11 , pp. 289-293
    • Östling, S.1    Virtama, P.2
  • 90
    • 78650071259 scopus 로고    scopus 로고
    • Granulicella paludicola gen. nov., sp. nov., Granulicella pectinivorans sp. nov., Granulicella aggregans sp. nov. and Granulicella rosea sp. nov., acidophilic, polymer-degrading acidobacteria from Sphagnum peat bogs
    • Pankratov, T. A., and Dedysh, S. N. (2010). Granulicella paludicola gen. nov., sp. nov., Granulicella pectinivorans sp. nov., Granulicella aggregans sp. nov. and Granulicella rosea sp. nov., acidophilic, polymer-degrading acidobacteria from Sphagnum peat bogs. Int. J. Syst. Evol. Microbiol. 60, 2951-2959. doi: 10.1099/ijs.0.021824-0.
    • (2010) Int. J. Syst. Evol. Microbiol , vol.60 , pp. 2951-2959
    • Pankratov, T.A.1    Dedysh, S.N.2
  • 91
    • 0033861052 scopus 로고    scopus 로고
    • Detection, quantification and characterization of β-glucosaminidase activity in soil
    • Parham, J. A., and Deng, S. P. (2000). Detection, quantification and characterization of β-glucosaminidase activity in soil. Soil Biol. Biochem. 32, 1183-1190. doi: 10.1016/S0038-0717(00)00034-1.
    • (2000) Soil Biol. Biochem , vol.32 , pp. 1183-1190
    • Parham, J.A.1    Deng, S.P.2
  • 92
    • 84863724529 scopus 로고    scopus 로고
    • Industrial dye decolorizing lignin peroxidase from Kocuria rosea MTCC 1532
    • Parshetti, G. K., Parshetti, S., Kalyani, D. C., Doong, R., and Govindwar, S. P. (2011). Industrial dye decolorizing lignin peroxidase from Kocuria rosea MTCC 1532. Ann. Microbiol. 62, 217-223. doi: 10.1007/s13213-011-0249-y.
    • (2011) Ann. Microbiol , vol.62 , pp. 217-223
    • Parshetti, G.K.1    Parshetti, S.2    Kalyani, D.C.3    Doong, R.4    Govindwar, S.P.5
  • 93
    • 0025289891 scopus 로고
    • Lignin-solubilizing ability of actinomycetes isolated from termite (Termitidae) gut
    • Pasti, M. B., Pometto, A. L., Nuti, M. P., and Crawford, D. L. (1990). Lignin-solubilizing ability of actinomycetes isolated from termite (Termitidae) gut. Appl. Environ. Microbiol. 56, 2213-2218.
    • (1990) Appl. Environ. Microbiol , vol.56 , pp. 2213-2218
    • Pasti, M.B.1    Pometto, A.L.2    Nuti, M.P.3    Crawford, D.L.4
  • 94
    • 3042823873 scopus 로고    scopus 로고
    • Utilization of microbial biofilms as monitors of bioremediation
    • Peacock, A. D., Chang, Y.-J., Istok, J. D., Krumholz, L., Geyer, R., Kinsall, B., et al. (2004). Utilization of microbial biofilms as monitors of bioremediation. Microb. Ecol. 47, 284-292. doi: 10.1007/s00248-003-1024-9.
    • (2004) Microb. Ecol , vol.47 , pp. 284-292
    • Peacock, A.D.1    Chang, Y.-J.2    Istok, J.D.3    Krumholz, L.4    Geyer, R.5    Kinsall, B.6
  • 95
    • 0025271082 scopus 로고
    • Biotransformation of kraft lignin fractions by Serratia marcescens
    • Perestelo, F., Falcón, M. A., and De la Fuente, G. (1990). Biotransformation of kraft lignin fractions by Serratia marcescens. Lett. Appl. Microbiol. 10, 61-64. doi: 10.1111/j.1472-765X.1990.tb00265.x.
    • (1990) Lett. Appl. Microbiol , vol.10 , pp. 61-64
    • Perestelo, F.1    Falcón, M.A.2    De la Fuente, G.3
  • 96
    • 0028160577 scopus 로고
    • Responses of trace gas fluxes and N availability to experimentally elevated soil temperatures
    • Peterjohn, W. T., Melillo, J. M., Steudler, P. A., Newkirk, K. M., Bowles, F. P., and Aber, J. D. (1994). Responses of trace gas fluxes and N availability to experimentally elevated soil temperatures. Ecol. Appl. 4, 617-625. doi: 10.2307/1941962.
    • (1994) Ecol. Appl , vol.4 , pp. 617-625
    • Peterjohn, W.T.1    Melillo, J.M.2    Steudler, P.A.3    Newkirk, K.M.4    Bowles, F.P.5    Aber, J.D.6
  • 97
    • 84880033932 scopus 로고    scopus 로고
    • Up against the wall: the effects of climate warming on soil microbial diversity and the potential for feedbacks to the carbon cycle
    • Pold, G., and DeAngelis, K. (2013). Up against the wall: the effects of climate warming on soil microbial diversity and the potential for feedbacks to the carbon cycle. Diversity 5, 409-425. doi: 10.3390/d5020409.
    • (2013) Diversity , vol.5 , pp. 409-425
    • Pold, G.1    DeAngelis, K.2
  • 98
    • 35448932479 scopus 로고    scopus 로고
    • Biodegradation of kraft-lignin by Bacillus sp. isolated from sludge of pulp and paper mill
    • Raj, A., Reddy, M. M. K., Chandra, R., Purohit, H. J., and Kapley, A. (2007). Biodegradation of kraft-lignin by Bacillus sp. isolated from sludge of pulp and paper mill. Biodegradation 18, 783-792. doi: 10.1007/s10532-007-9107-9.
    • (2007) Biodegradation , vol.18 , pp. 783-792
    • Raj, A.1    Reddy, M.M.K.2    Chandra, R.3    Purohit, H.J.4    Kapley, A.5
  • 100
    • 0002062430 scopus 로고    scopus 로고
    • geoR: a package for geostatistical analysis
    • Ribeiro, P. J., and Diggle, P. (2001). geoR: a package for geostatistical analysis. R-NEWS 1, 15-18.
    • (2001) R-NEWS , vol.1 , pp. 15-18
    • Ribeiro, P.J.1    Diggle, P.2
  • 102
    • 84865866018 scopus 로고    scopus 로고
    • Temperature adaptation of bacterial communities in experimentally warmed forest soils
    • Rousk, J., Frey, S., and Bååth, E. (2012). Temperature adaptation of bacterial communities in experimentally warmed forest soils. Glob. Change Biol. 18, 3252-3258. doi: 10.1111/j.1365-2486.2012.02764.x.
    • (2012) Glob. Change Biol , vol.18 , pp. 3252-3258
    • Rousk, J.1    Frey, S.2    Bååth, E.3
  • 103
    • 0000541109 scopus 로고
    • An extension of shapiro and Wilk's W test for normality to large samples
    • Royston, J. P. (1982). An extension of shapiro and Wilk's W test for normality to large samples. J. R. Stat. Soc. Ser. C Appl. Stat. 31, 115-124. doi: 10.2307/2347973.
    • (1982) J. R. Stat. Soc. Ser. C Appl. Stat , vol.31 , pp. 115-124
    • Royston, J.P.1
  • 104
    • 17744363063 scopus 로고    scopus 로고
    • A meta-analysis of the response of soil respiration, net nitrogen mineralization, and aboveground plant growth to experimental ecosystem warming
    • Rustad, L. E., Campbell, J. L., Marion, G. M., Norby, R. J., Mitchell, M. J., Hartley, A. E., et al. (2001). A meta-analysis of the response of soil respiration, net nitrogen mineralization, and aboveground plant growth to experimental ecosystem warming. Oecologia 126, 543-562. doi: 10.1007/s004420000544.
    • (2001) Oecologia , vol.126 , pp. 543-562
    • Rustad, L.E.1    Campbell, J.L.2    Marion, G.M.3    Norby, R.J.4    Mitchell, M.J.5    Hartley, A.E.6
  • 105
    • 0036721537 scopus 로고    scopus 로고
    • The effects of long term nitrogen deposition on extracellular enzyme activity in an Acer saccharum forest soil
    • Saiya-Cork, K., Sinsabaugh, R., and Zak, D. (2002). The effects of long term nitrogen deposition on extracellular enzyme activity in an Acer saccharum forest soil. Soil Biol. Biochem. 34, 1309-1315. doi: 10.1016/S0038-0717(02)00074-3.
    • (2002) Soil Biol. Biochem , vol.34 , pp. 1309-1315
    • Saiya-Cork, K.1    Sinsabaugh, R.2    Zak, D.3
  • 106
    • 84907867829 scopus 로고    scopus 로고
    • Thermodynamic theory explains the temperature optima of soil microbial processes and high Q10 values at low temperatures
    • Schipper, L. A., Hobbs, J. K., Rutledge, S., and Arcus, V. L. (2014). Thermodynamic theory explains the temperature optima of soil microbial processes and high Q10 values at low temperatures. Glob. Change Biol. 20, 3578-3586. doi: 10.1111/gcb.12596.
    • (2014) Glob. Change Biol , vol.20 , pp. 3578-3586
    • Schipper, L.A.1    Hobbs, J.K.2    Rutledge, S.3    Arcus, V.L.4
  • 107
    • 77956406749 scopus 로고    scopus 로고
    • Proteome analysis of fungal and bacterial involvement in leaf litter decomposition
    • Schneider, T., Gerrits, B., Gassmann, R., Schmid, E., Gessner, M. O., Richter, A., et al. (2010). Proteome analysis of fungal and bacterial involvement in leaf litter decomposition. Proteomics 10, 1819-1830. doi: 10.1002/pmic.200900691.
    • (2010) Proteomics , vol.10 , pp. 1819-1830
    • Schneider, T.1    Gerrits, B.2    Gassmann, R.3    Schmid, E.4    Gessner, M.O.5    Richter, A.6
  • 108
    • 84865341467 scopus 로고    scopus 로고
    • Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions
    • Schneider, T., Keiblinger, K. M., Schmid, E., Sterflinger-Gleixner, K., Ellersdorfer, G., Roschitzki, B., et al. (2012). Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. ISME J. 6, 1749-1762. doi: 10.1038/ismej.2012.11.
    • (2012) ISME J , vol.6 , pp. 1749-1762
    • Schneider, T.1    Keiblinger, K.M.2    Schmid, E.3    Sterflinger-Gleixner, K.4    Ellersdorfer, G.5    Roschitzki, B.6
  • 109
    • 85044303384 scopus 로고    scopus 로고
    • Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8
    • Shi, Y., Chai, L., Tang, C., Yang, Z., Zhang, H., Chen, R., et al. (2013). Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8. Biotechnol. Biofuels 6:1. doi: 10.1186/1754-6834-6-1.
    • (2013) Biotechnol. Biofuels , vol.6 , pp. 1
    • Shi, Y.1    Chai, L.2    Tang, C.3    Yang, Z.4    Zhang, H.5    Chen, R.6
  • 110
    • 84878422461 scopus 로고    scopus 로고
    • Long-term warming restructures Arctic tundra without changing net soil carbon storage
    • Sistla, S. A., Moore, J. C., Simpson, R. T., Gough, L., Shaver, G. R., and Schimel, J. P. (2013). Long-term warming restructures Arctic tundra without changing net soil carbon storage. Nature 497, 615-618. doi: 10.1038/nature12129.
    • (2013) Nature , vol.497 , pp. 615-618
    • Sistla, S.A.1    Moore, J.C.2    Simpson, R.T.3    Gough, L.4    Shaver, G.R.5    Schimel, J.P.6
  • 111
    • 84857142827 scopus 로고    scopus 로고
    • Temperature sensitivity of soil enzyme kinetics under N-fertilization in two temperate forests
    • Stone, M., Weiss, M., Goodale, C., Adams, M. B., Fernandez, I. J., German, D. P., et al. (2012). Temperature sensitivity of soil enzyme kinetics under N-fertilization in two temperate forests. Glob. Change Biol. 18, 1173-1184. doi: 10.1111/j.1365-2486.2011.02545.x.
    • (2012) Glob. Change Biol , vol.18 , pp. 1173-1184
    • Stone, M.1    Weiss, M.2    Goodale, C.3    Adams, M.B.4    Fernandez, I.J.5    German, D.P.6
  • 113
    • 63849254954 scopus 로고    scopus 로고
    • Testing the functional significance of microbial community composition
    • Strickland, M., Lauber, C. L., Fierer, N., and Bradford, M. A. (2009). Testing the functional significance of microbial community composition. Ecology 90, 441-451. doi: 10.1890/08-0296.1.
    • (2009) Ecology , vol.90 , pp. 441-451
    • Strickland, M.1    Lauber, C.L.2    Fierer, N.3    Bradford, M.A.4
  • 114
    • 33646699295 scopus 로고    scopus 로고
    • Monitoring subsurface microbial ecology in a sulfate-amended, gasoline-contaminated aquifer
    • Sublette, K., Peacock, A., White, D., Davis, G., Ogles, D., Cook, D., et al. (2006). Monitoring subsurface microbial ecology in a sulfate-amended, gasoline-contaminated aquifer. Groundw. Monit. Remediat. 26, 70-78. doi: 10.1111/j.1745-6592.2006.00072.x.
    • (2006) Groundw. Monit. Remediat , vol.26 , pp. 70-78
    • Sublette, K.1    Peacock, A.2    White, D.3    Davis, G.4    Ogles, D.5    Cook, D.6
  • 115
    • 84865294159 scopus 로고    scopus 로고
    • Isolation of bacterial strains able to metabolize lignin from screening of environmental samples
    • Taylor, C. R., Hardiman, E. M., Ahmad, M., Sainsbury, P. D., Norris, P. R., and Bugg, T. D. (2012). Isolation of bacterial strains able to metabolize lignin from screening of environmental samples. J. Appl. Microbiol. 113, 521-530. doi: 10.1111/j.1365-2672.2012.05352.x.
    • (2012) J. Appl. Microbiol , vol.113 , pp. 521-530
    • Taylor, C.R.1    Hardiman, E.M.2    Ahmad, M.3    Sainsbury, P.D.4    Norris, P.R.5    Bugg, T.D.6
  • 116
    • 0017366945 scopus 로고
    • Decomposition of 14C-labelled lignin and phenols by a Nocardia sp
    • Trojanowski, J., Haider, K., and Sundman, V. (1977). Decomposition of 14C-labelled lignin and phenols by a Nocardia sp. Arch. Microbiol. 114, 149-153. doi: 10.1007/BF00410776.
    • (1977) Arch. Microbiol , vol.114 , pp. 149-153
    • Trojanowski, J.1    Haider, K.2    Sundman, V.3
  • 117
    • 0002196917 scopus 로고
    • Comparing individual means in the analysis of variance
    • Tukey, J. W. (1949). Comparing individual means in the analysis of variance. Biometrics 5, 99-114. doi: 10.2307/3001913.
    • (1949) Biometrics , vol.5 , pp. 99-114
    • Tukey, J.W.1
  • 118
    • 0033166540 scopus 로고    scopus 로고
    • Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis
    • Turner, S., Pryer, K. M., Miao, V. P., and Palmer, J. D. (1999). Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. J. Eukaryot. Microbiol. 46, 327-338. doi: 10.1111/j.1550-7408.1999.tb04612.x.
    • (1999) J. Eukaryot. Microbiol , vol.46 , pp. 327-338
    • Turner, S.1    Pryer, K.M.2    Miao, V.P.3    Palmer, J.D.4
  • 119
    • 78651322088 scopus 로고    scopus 로고
    • Species abundance distributions and richness estimations in fungal metagenomics-lessons learned from community ecology
    • Unterseher, M., Jumpponen, A., Opik, M., Tedersoo, L., Moora, M., Dormann, C. F., et al. (2011). Species abundance distributions and richness estimations in fungal metagenomics-lessons learned from community ecology. Mol. Ecol. 20, 275-285. doi: 10.1111/j.1365-294X.2010.04948.x.
    • (2011) Mol. Ecol , vol.20 , pp. 275-285
    • Unterseher, M.1    Jumpponen, A.2    Opik, M.3    Tedersoo, L.4    Moora, M.5    Dormann, C.F.6
  • 121
    • 80053482798 scopus 로고    scopus 로고
    • "Controls on the temperature sensitivity of soil enzymes: a key driver of in situ enzyme activity rates"
    • (Heidelberg: Springer-Verlag Berlin)
    • Wallenstein, M., Allison, S. D., Ernakovich, J., Steinweg, J. M., and Sinsabaugh, R. (2011). "Controls on the temperature sensitivity of soil enzymes: a key driver of in situ enzyme activity rates," in Soil Enzymology Soil Biology (Heidelberg: Springer-Verlag Berlin), 245-258. Available online at: http://allison.bio.uci.edu/publications/wallenstein2010b.pdf.
    • (2011) Soil Enzymology Soil Biology , pp. 245-258
    • Wallenstein, M.1    Allison, S.D.2    Ernakovich, J.3    Steinweg, J.M.4    Sinsabaugh, R.5
  • 122
    • 34548293679 scopus 로고    scopus 로고
    • Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R. (2007). Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267. doi: 10.1128/AEM.00062-07.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 123
    • 84355166737 scopus 로고    scopus 로고
    • Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
    • Werner, J. J., Koren, O., Hugenholtz, P., DeSantis, T. Z., Walters, W. A., Caporaso, J. G., et al. (2012). Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. ISME J. 6, 94-103. doi: 10.1038/ismej.2011.82.
    • (2012) ISME J , vol.6 , pp. 94-103
    • Werner, J.J.1    Koren, O.2    Hugenholtz, P.3    DeSantis, T.Z.4    Walters, W.A.5    Caporaso, J.G.6
  • 124
    • 84887221497 scopus 로고    scopus 로고
    • Global soil carbon projections are improved by modelling microbial processes
    • Wieder, W. R., Bonan, G. B., and Allison, S. D. (2013). Global soil carbon projections are improved by modelling microbial processes. Nat. Clim. Change 3, 909-912. doi: 10.1038/nclimate1951.
    • (2013) Nat. Clim. Change , vol.3 , pp. 909-912
    • Wieder, W.R.1    Bonan, G.B.2    Allison, S.D.3
  • 125
    • 84872648970 scopus 로고    scopus 로고
    • Demonstrating the in situ biodegradation potential of phenol using bio-sep® bio-traps® and stable isotope probing
    • Williams, N., Hyland, A., Mitchener, R., Sublette, K., Key, K. C., Davis, G., et al. (2013). Demonstrating the in situ biodegradation potential of phenol using bio-sep® bio-traps® and stable isotope probing. Remediat. J. 23, 7-22. doi: 10.1002/rem.21335.
    • (2013) Remediat. J , vol.23 , pp. 7-22
    • Williams, N.1    Hyland, A.2    Mitchener, R.3    Sublette, K.4    Key, K.C.5    Davis, G.6
  • 126
    • 84971222033 scopus 로고    scopus 로고
    • Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2
    • Woo, H. L., Ballor, N. R., Hazen, T. C., Fortney, J. L., Simmons, B., Davenport, K. W., et al. (2014a). Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2. Stand. Genomic Sci. 9:19. doi: 10.1186/1944-3277-9-19.
    • (2014) Stand. Genomic Sci , vol.9 , pp. 19
    • Woo, H.L.1    Ballor, N.R.2    Hazen, T.C.3    Fortney, J.L.4    Simmons, B.5    Davenport, K.W.6
  • 127
    • 84999277845 scopus 로고    scopus 로고
    • Draft genome sequence of the lignin-degrading Burkholderia sp. strain LIG30, isolated from wet tropical forest soil
    • Woo, H. L., Utturkar, S., Klingeman, D., Simmons, B. A., DeAngelis, K. M., Brown, S. D., et al. (2014b). Draft genome sequence of the lignin-degrading Burkholderia sp. strain LIG30, isolated from wet tropical forest soil. Genome Announc. 2:e00637-14. doi: 10.1128/genomeA.00637-14.
    • (2014) Genome Announc , vol.2
    • Woo, H.L.1    Utturkar, S.2    Klingeman, D.3    Simmons, B.A.4    DeAngelis, K.M.5    Brown, S.D.6
  • 128
    • 84892524664 scopus 로고    scopus 로고
    • Isolation of a rice endophytic bacterium, Pantoea sp. Sd-1, with ligninolytic activity and characterization of its rice straw degradation ability
    • Xiong, X. Q., Liao, H. D., Ma, J. S., Liu, X. M., Zhang, L. Y., Shi, X. W., et al. (2014). Isolation of a rice endophytic bacterium, Pantoea sp. Sd-1, with ligninolytic activity and characterization of its rice straw degradation ability. Lett. Appl. Microbiol. 58, 123-129. doi: 10.1111/lam.12163.
    • (2014) Lett. Appl. Microbiol , vol.58 , pp. 123-129
    • Xiong, X.Q.1    Liao, H.D.2    Ma, J.S.3    Liu, X.M.4    Zhang, L.Y.5    Shi, X.W.6
  • 129
    • 84869502393 scopus 로고    scopus 로고
    • Long-term experimental warming decreased labile soil organic carbon in a tallgrass prairie
    • Xu, X., Sherry, R., Niu, S., Zhou, J., and Luo, Y. (2012). Long-term experimental warming decreased labile soil organic carbon in a tallgrass prairie. Plant Soil 361, 307-315. doi: 10.1007/s11104-012-1265-9.
    • (2012) Plant Soil , vol.361 , pp. 307-315
    • Xu, X.1    Sherry, R.2    Niu, S.3    Zhou, J.4    Luo, Y.5
  • 130
    • 77952955505 scopus 로고    scopus 로고
    • Kinetic and thermodynamic parameters of B-glucosidase immobilized on various colloidal particles from a paddy soil
    • Yan, J., Pan, G., Ding, C., and Quan, G. (2010). Kinetic and thermodynamic parameters of B-glucosidase immobilized on various colloidal particles from a paddy soil. Colloids Surf. B Biointerfaces 79, 298-303. doi: 10.1016/j.colsurfb.2010.04.015.
    • (2010) Colloids Surf. B Biointerfaces , vol.79 , pp. 298-303
    • Yan, J.1    Pan, G.2    Ding, C.3    Quan, G.4
  • 131
    • 84861607586 scopus 로고    scopus 로고
    • Warming and increased precipitation frequency on the Colorado Plateau: implications for biological soil crusts and soil processes
    • Zelikova, T. J., Housman, D. C., Grote, E. E., Neher, D. A., and Belnap, J. (2012). Warming and increased precipitation frequency on the Colorado Plateau: implications for biological soil crusts and soil processes. Plant Soil 355, 265-282. doi: 10.1007/s11104-011-1097-z.
    • (2012) Plant Soil , vol.355 , pp. 265-282
    • Zelikova, T.J.1    Housman, D.C.2    Grote, E.E.3    Neher, D.A.4    Belnap, J.5


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