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Volumn 9, Issue 1, 2014, Pages

Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2

Author keywords

Anaerobic lignin degradation; Facultative anaerobe; Tropical forest soil isolate

Indexed keywords


EID: 84971222033     PISSN: None     EISSN: 19443277     Source Type: Journal    
DOI: 10.1186/1944-3277-9-19     Document Type: Article
Times cited : (50)

References (42)
  • 1
    • 64849102149 scopus 로고    scopus 로고
    • Controls on long-term root and leaf litter decomposition in neotropical forests
    • Cusack DF, Chou WW, Yang WH, Harmon ME, Silver WL: Controls on long-term root and leaf litter decomposition in neotropical forests. Glob Chang Biol 2009, 15: 1339-1355. 10.1111/j.1365-2486.2008.01781.x
    • (2009) Glob Chang Biol , vol.15 , pp. 1339-1355
    • Cusack, D.F.1    Chou, W.W.2    Yang, W.H.3    Harmon, M.E.4    Silver, W.L.5
  • 3
    • 0035843176 scopus 로고    scopus 로고
    • An enzymic "latch" on a global carbon store
    • Freeman C, Ostle N, Kang H: An enzymic "latch" on a global carbon store. Nature 2001, 409: 149-49.
    • (2001) Nature , vol.409 , pp. 149-149
    • Freeman, C.1    Ostle, N.2    Kang, H.3
  • 4
    • 0004078066 scopus 로고    scopus 로고
    • Soil microbiology, ecology, and biochemistry
    • New York, NY: Academic Pr
    • Paul EA, Clark FE: Soil microbiology, ecology, and biochemistry. New York, NY: Academic Pr; 1996.
    • (1996)
    • Paul, E.A.1    Clark, F.E.2
  • 5
    • 70350455262 scopus 로고    scopus 로고
    • The prospects of cellulase-producing bacteria for the bioconversion of lignocellulosic biomass
    • Maki M, Leung KT, Qin W: The prospects of cellulase-producing bacteria for the bioconversion of lignocellulosic biomass. Int J Biol Sci 2009, 5: 500-516.
    • (2009) Int J Biol Sci , vol.5 , pp. 500-516
    • Maki, M.1    Leung, K.T.2    Qin, W.3
  • 6
    • 0021350907 scopus 로고
    • Growth yield increase linked to caffeate reduction in Acetobacterium woodii
    • Tschech A, Pfennig N: Growth yield increase linked to caffeate reduction in Acetobacterium woodii. Arch Microbiol 1984, 137: 163-167. 10.1007/BF00414460
    • (1984) Arch Microbiol , vol.137 , pp. 163-167
    • Tschech, A.1    Pfennig, N.2
  • 7
    • 34250150693 scopus 로고
    • Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids
    • Widdel F, Kohring GW, Mayer F: Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. Arch Microbiol 1983, 134: 286-294. 10.1007/BF00407804
    • (1983) Arch Microbiol , vol.134 , pp. 286-294
    • Widdel, F.1    Kohring, G.W.2    Mayer, F.3
  • 8
    • 0030613344 scopus 로고    scopus 로고
    • Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil
    • Janssen PH, Schuhmann A, Morschel E, Rainey FA: Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl Environ Microbiol 1997, 63: 1382.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1382
    • Janssen, P.H.1    Schuhmann, A.2    Morschel, E.3    Rainey, F.A.4
  • 9
    • 0025045135 scopus 로고
    • Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction
    • Wilson KH, Blitchington RB, Greene RC: Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. J Clin Microbiol 1990, 28: 1942-1946.
    • (1990) J Clin Microbiol , vol.28 , pp. 1942-1946
    • Wilson, K.H.1    Blitchington, R.B.2    Greene, R.C.3
  • 10
    • 9144257886 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Bateman A: The Pfam protein families database. Nucleic Acids Res 2004, 32: 138D-141. 10.1093/nar/gkh121
    • (2004) Nucleic Acids Res , vol.32 , pp. 138D-141
    • Bateman, A.1
  • 11
    • 40849089606 scopus 로고    scopus 로고
    • Introduction to the Taxonomic Outline of Bacteria and Archaea (TOBA) Release 7.7. The Taxonomic Outline of Bacteria and
    • Garrity GM, Lilburn TG, Cole JR, Harrison SH, Euzeby J, Tindall BJ: Introduction to the Taxonomic Outline of Bacteria and Archaea (TOBA) Release 7.7. The Taxonomic Outline of Bacteria and. Archaea 2007, 7: 1-5.
    • (2007) Archaea , vol.7 , pp. 1-5
    • Garrity, G.M.1    Lilburn, T.G.2    Cole, J.R.3    Harrison, S.H.4    Euzeby, J.5    Tindall, B.J.6
  • 12
    • 0033984609 scopus 로고    scopus 로고
    • Weighted Neighbor Joining: A Likelihood-Based Approach to Distance-Based Phylogeny Reconstruction
    • Bruno WJ, Socci ND, Halpern AL: Weighted Neighbor Joining: A Likelihood-Based Approach to Distance-Based Phylogeny Reconstruction. Mol Biol Evol 2000, 17: 189-197. 10.1093/oxfordjournals.molbev.a026231
    • (2000) Mol Biol Evol , vol.17 , pp. 189-197
    • Bruno, W.J.1    Socci, N.D.2    Halpern, A.L.3
  • 15
    • 0000685441 scopus 로고    scopus 로고
    • Taxonomic Outline of the Archaea and Bacteria
    • In Bergey's Manual of Systematic Bacteriology, Second Edition. 2nd edition. Edited by: Garrity GM, Boone DR, Castenholz RW. New York: Springer
    • Garrity GM, Holt JG: Taxonomic Outline of the Archaea and Bacteria. In Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 2, Part B. 2nd edition. Edited by: Garrity GM, Boone DR, Castenholz RW. New York: Springer; 2001.
    • (2001) , vol.2
    • Garrity, G.M.1    Holt, J.G.2
  • 16
    • 33646193540 scopus 로고    scopus 로고
    • Phylum XIV: Proteobacteria phyl
    • In Bergey's Manual of Systematic Bacteriology, Second Edition, Part B. 2nd edition. Edited by: Garrity GM, Brenner DJ, Krieg NR, Staley JT. New York: Springer
    • Garrity GM, Bell JA, Lilburn T, Phylum XIV: Proteobacteria phyl. In Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 2, Part B. 2nd edition. Edited by: Garrity GM, Brenner DJ, Krieg NR, Staley JT. New York: Springer; 2005.
    • (2005) , vol.2
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 17
    • 33646193540 scopus 로고    scopus 로고
    • Class III. Gammaproteobacteria class
    • In Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 2, Part B. 2nd edition. Edited by: Garrity GM, Brenner DJ, Krieg NR, Staley JT. New York: Springer
    • Garrity GM, Bell JA, Lilburn T: Class III. Gammaproteobacteria class. In Bergey's Manual of Systematic Bacteriology, Second Edition, Volume 2, Part B. 2nd edition. Edited by: Garrity GM, Brenner DJ, Krieg NR, Staley JT. New York: Springer; 2005.
    • (2005)
    • Garrity, G.M.1    Bell, J.A.2    Lilburn, T.3
  • 19
    • 80054871700 scopus 로고
    • Conservation of the family name Enterobacteriaceae, of the name of the type genus, and designation of the type species OPINION NO. 15
    • Commission J: Conservation of the family name Enterobacteriaceae, of the name of the type genus, and designation of the type species OPINION NO. 15. Int Bull Bacteriol Nomencl Taxon 1958, 8: 73-74.
    • (1958) Int Bull Bacteriol Nomencl Taxon , vol.8 , pp. 73-74
    • Commission, J.1
  • 20
    • 55449089261 scopus 로고    scopus 로고
    • The Genus Klebsiella
    • Edited by: Dr MDP, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E. New York: Springer
    • Brisse S, Grimont F, Grimont PAD: The Genus Klebsiella. In The Prokaryotes. Edited by: Dr MDP, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E. New York: Springer; 2006:159-196.
    • (2006) The Prokaryotes , pp. 159-196
    • Brisse, S.1    Grimont, F.2    Grimont, P.A.D.3
  • 21
    • 0034992487 scopus 로고    scopus 로고
    • Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov
    • Drancourt M, Bollet C, Carta A, Rousselier P: Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov. Int J Syst Evol Microbiol 2001, 51: 925-932. 10.1099/00207713-51-3-925
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 925-932
    • Drancourt, M.1    Bollet, C.2    Carta, A.3    Rousselier, P.4
  • 23
    • 77952423292 scopus 로고    scopus 로고
    • Microbial communities acclimate to recurring changes in soil redox potential status
    • DeAngelis KM, Silver WL, Thompson AW, Firestone MK: Microbial communities acclimate to recurring changes in soil redox potential status. Environ Microbiol 2010, 12: 3137-3149. 10.1111/j.1462-2920.2010.02286.x
    • (2010) Environ Microbiol , vol.12 , pp. 3137-3149
    • DeAngelis, K.M.1    Silver, W.L.2    Thompson, A.W.3    Firestone, M.K.4
  • 26
    • 3142780737 scopus 로고    scopus 로고
    • Solexa Ltd: Pharmacogenomics
    • Bennett S, Solexa Ltd: Pharmacogenomics. 2004, 5: 433-438. 10.1517/14622416.5.4.433
    • (2004) , vol.5 , pp. 433-438
    • Bennett, S.1
  • 27
    • 84876096880 scopus 로고    scopus 로고
    • DUK-A Fast and Efficient Kmer Based Sequence Matching Tool
    • Li M, Copeland A, Han J: DUK-A Fast and Efficient Kmer Based Sequence Matching Tool. 2011.
    • (2011)
    • Li, M.1    Copeland, A.2    Han, J.3
  • 34
    • 58349122104 scopus 로고    scopus 로고
    • Overcoming the anaerobic hurdle in phenotypic microarrays: Generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough
    • Borglin S, Joyner D, Jacobsen J, Mukhopadhyay A, Hazen TC: Overcoming the anaerobic hurdle in phenotypic microarrays: Generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough. J Microbiol Methods 2009, 76: 159-168. 10.1016/j.mimet.2008.10.003
    • (2009) J Microbiol Methods , vol.76 , pp. 159-168
    • Borglin, S.1    Joyner, D.2    Jacobsen, J.3    Mukhopadhyay, A.4    Hazen, T.C.5
  • 35
    • 84895071844 scopus 로고    scopus 로고
    • Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils
    • Woo HL, Hazen TC, Simmons BA, DeAngelis KM: Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils. Syst Appl Microbiol 2014, 37: 60-67. 10.1016/j.syapm.2013.10.001
    • (2014) Syst Appl Microbiol , vol.37 , pp. 60-67
    • Woo, H.L.1    Hazen, T.C.2    Simmons, B.A.3    DeAngelis, K.M.4
  • 36
    • 0033383704 scopus 로고    scopus 로고
    • Characterization of Sphingomonas paucimobilis SYK-6 genes involved in degradation of lignin-related compounds
    • Masai E, Katayama Y, Nishikawa S, Fukuda M: Characterization of Sphingomonas paucimobilis SYK-6 genes involved in degradation of lignin-related compounds. J Ind Microbiol Biotech 1999, 23: 364-373. 10.1038/sj.jim.2900747
    • (1999) J Ind Microbiol Biotech , vol.23 , pp. 364-373
    • Masai, E.1    Katayama, Y.2    Nishikawa, S.3    Fukuda, M.4
  • 37
    • 81355123362 scopus 로고    scopus 로고
    • Pathways for degradation of lignin in bacteria and fungi
    • Bugg TDH, Ahmad M, Hardiman EM, Rahmanpour R: Pathways for degradation of lignin in bacteria and fungi. Nat Prod Rep 2011, 28: 1883-1896. 10.1039/c1np00042j
    • (2011) Nat Prod Rep , vol.28 , pp. 1883-1896
    • Bugg, T.D.H.1    Ahmad, M.2    Hardiman, E.M.3    Rahmanpour, R.4
  • 38
    • 33846485037 scopus 로고    scopus 로고
    • Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds
    • Masai E, Katayama Y, Fukuda M: Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds. Biosci Biotechnol Biochem 2007, 71: 1-15. 10.1271/bbb.60437
    • (2007) Biosci Biotechnol Biochem , vol.71 , pp. 1-15
    • Masai, E.1    Katayama, Y.2    Fukuda, M.3
  • 41
    • 33747333106 scopus 로고
    • Use of dinitrosalicylic acid reagent for determination of reducing sugar
    • Miller GL: Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 1959, 31: 426-428. 10.1021/ac60147a030
    • (1959) Anal Chem , vol.31 , pp. 426-428
    • Miller, G.L.1


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