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Volumn 6, Issue MAY, 2015, Pages

The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements

Author keywords

Comparative genomics; Pantoea ananatis; Plant growth promotion; Seed endophyte

Indexed keywords

CHEMOTAXIS METHYL ACCEPTING RECEPTOR; CHEMOTAXIS PROTEIN; FLAGELLAR ASSEMBLY PROTEIN; FORKHEAD TRANSCRIPTION FACTOR; PHOSPHATASE; PROTEIN; PROTON COUPLED FOLATE TRANSPORTER; RNA 16S; TRIACYLGLYCEROL LIPASE; UNCLASSIFIED DRUG; XYLAN ENDO 1, 3 BETA XYLOSIDASE;

EID: 84931262258     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.00440     Document Type: Article
Times cited : (73)

References (62)
  • 1
    • 79961109150 scopus 로고    scopus 로고
    • BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
    • Alikhan, N.-F., Petty, N., Ben Zakour, N., and Beatson, S. (2011). BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 12:402. doi: 10.1186/1471-2164-12-402.
    • (2011) BMC Genomics , vol.12 , pp. 402
    • Alikhan, N.-F.1    Petty, N.2    Ben Zakour, N.3    Beatson, S.4
  • 2
    • 0033861662 scopus 로고    scopus 로고
    • A new leaf blotch disease of sudangrass caused by Pantoea ananas and Pantoea stewartii
    • Azad, H., Holmes, G., and Cooksey, D. (2000). A new leaf blotch disease of sudangrass caused by Pantoea ananas and Pantoea stewartii. Plant Dis. 84, 973-979. doi: 10.1094/PDIS.2000.84.9.973.
    • (2000) Plant Dis , vol.84 , pp. 973-979
    • Azad, H.1    Holmes, G.2    Cooksey, D.3
  • 3
    • 0032900737 scopus 로고    scopus 로고
    • CRITICA: coding region identification tool invoking comparative analysis
    • Badger, J. H., and Olsen, G. J. (1999). CRITICA: coding region identification tool invoking comparative analysis. Mol. Biol. Evol. 16, 512-524. doi: 10.1093/oxfordjournals.molbev.a026133.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 512-524
    • Badger, J.H.1    Olsen, G.J.2
  • 4
    • 34250235511 scopus 로고
    • Survival ofXanthomonas campestris pv.vesictoria in pepper seeds and roots in symptomless and dry leaves in non-host plants and in the soil
    • Bashan, Y., Diab, S., and Okon, Y. (1982). Survival ofXanthomonas campestris pv.vesictoria in pepper seeds and roots in symptomless and dry leaves in non-host plants and in the soil. Plant Soil 68, 161-170. doi: 10.1007/BF02373702.
    • (1982) Plant Soil , vol.68 , pp. 161-170
    • Bashan, Y.1    Diab, S.2    Okon, Y.3
  • 5
    • 78650639976 scopus 로고    scopus 로고
    • Comparative analysis of defence responses induced by the endophytic plant growth-promoting rhizobacterium Burkholderia phytofirmans strain PsJN and the non-host bacterium Pseudomonas syringae pv. pisi in grapevine cell suspensions
    • Bordiec, S., Paquis, S., Lacroix, H., Dhondt, S., Ait Barka, E., Kauffmann, S., et al. (2011). Comparative analysis of defence responses induced by the endophytic plant growth-promoting rhizobacterium Burkholderia phytofirmans strain PsJN and the non-host bacterium Pseudomonas syringae pv. pisi in grapevine cell suspensions. J. Exp. Bot. 62, 595-603. doi: 10.1093/jxb/erq291.
    • (2011) J. Exp. Bot , vol.62 , pp. 595-603
    • Bordiec, S.1    Paquis, S.2    Lacroix, H.3    Dhondt, S.4    Ait Barka, E.5    Kauffmann, S.6
  • 6
    • 84862907986 scopus 로고    scopus 로고
    • Complete genome sequence of the rice pathogen Pantoea ananatis strain PA13
    • Choi, O., Lim, J. Y., Seo, Y. S., Hwang, I., and Kim, J. (2012). Complete genome sequence of the rice pathogen Pantoea ananatis strain PA13. J. Bacteriol. 194, 531. doi: 10.1128/JB.06450-11.
    • (2012) J. Bacteriol , vol.194 , pp. 531
    • Choi, O.1    Lim, J.Y.2    Seo, Y.S.3    Hwang, I.4    Kim, J.5
  • 7
    • 79960602562 scopus 로고    scopus 로고
    • Endophytes of grapevine flowers, berries, and seeds: identification of cultivable bacteria, comparison with other plant parts, and visualization of niches of colonization
    • Compant, S., Mitter, B., Colli-Mull, J. G., Gangl, H., and Sessitsch, A. (2011). Endophytes of grapevine flowers, berries, and seeds: identification of cultivable bacteria, comparison with other plant parts, and visualization of niches of colonization. Microb. Ecol. 62, 188-197. doi: 10.1007/s00248-011-9883-y.
    • (2011) Microb. Ecol , vol.62 , pp. 188-197
    • Compant, S.1    Mitter, B.2    Colli-Mull, J.G.3    Gangl, H.4    Sessitsch, A.5
  • 8
    • 0024371122 scopus 로고
    • Genetic and physiological relationships among the miaA gene, 2-methylthio-N6-(delta 2-isopentenyl)-adenosine tRNA modification, and spontaneous mutagenesis in Escherichia coli K-12
    • Connolly, D. M., and Winkler, M. E. (1989). Genetic and physiological relationships among the miaA gene, 2-methylthio-N6-(delta 2-isopentenyl)-adenosine tRNA modification, and spontaneous mutagenesis in Escherichia coli K-12. J. Bacteriol. 171, 3233-3246.
    • (1989) J. Bacteriol , vol.171 , pp. 3233-3246
    • Connolly, D.M.1    Winkler, M.E.2
  • 9
    • 78649823406 scopus 로고    scopus 로고
    • First report of pathogenicity of Pantoea ananatis in sorghum (Sorghum bicolor) in Brazil
    • Cota, L., Costa, R., Silva, D., Parreira, D., Lana, U., and Casela, C. (2010). First report of pathogenicity of Pantoea ananatis in sorghum (Sorghum bicolor) in Brazil. Australas. Plant Dis. Notes 5, 120-122. doi: 10.1071/DN10044.
    • (2010) Australas. Plant Dis. Notes , vol.5 , pp. 120-122
    • Cota, L.1    Costa, R.2    Silva, D.3    Parreira, D.4    Lana, U.5    Casela, C.6
  • 10
    • 12344274791 scopus 로고    scopus 로고
    • An unusual stem necrosis of rice caused by Pantoea ananas and the first record of this pathogen on rice in Australia
    • Cother, E., Reinke, R., Mckenzie, C., Lanoiselet, V., and Noble, D. (2004). An unusual stem necrosis of rice caused by Pantoea ananas and the first record of this pathogen on rice in Australia. Australas. Plant Pathol. 33, 495-503. doi: 10.1071/AP04053.
    • (2004) Australas. Plant Pathol , vol.33 , pp. 495-503
    • Cother, E.1    Reinke, R.2    Mckenzie, C.3    Lanoiselet, V.4    Noble, D.5
  • 11
    • 64949188611 scopus 로고    scopus 로고
    • Pantoea ananatis: an unconventional plant pathogen
    • Coutinho, T. A., and Venter, S. N. (2009). Pantoea ananatis: an unconventional plant pathogen. Mol. Plant Pathol. 10, 325-335. doi: 10.1111/j.1364-3703.2009.00542.x.
    • (2009) Mol. Plant Pathol , vol.10 , pp. 325-335
    • Coutinho, T.A.1    Venter, S.N.2
  • 12
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: multiple alignment of conserved genomic sequences with rearrangements
    • Darling, A., Mau, B., Blattner, F., and Perna, N. (2004). Mauve: multiple alignment of conserved genomic sequences with rearrangements. Genome Res. 14, 1394-1403. doi: 10.1101/gr.2289704.
    • (2004) Genome Res , vol.14 , pp. 1394-1403
    • Darling, A.1    Mau, B.2    Blattner, F.3    Perna, N.4
  • 13
    • 34147132825 scopus 로고    scopus 로고
    • Identifying bacterial genes and endosymbiont DNA with Glimmer
    • Delcher, A. L., Bratke, K. A., Powers, E. C., and Salzberg, S. L. (2007). Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23, 673-679. doi: 10.1093/bioinformatics/btm009.
    • (2007) Bioinformatics , vol.23 , pp. 673-679
    • Delcher, A.L.1    Bratke, K.A.2    Powers, E.C.3    Salzberg, S.L.4
  • 14
    • 84868697465 scopus 로고    scopus 로고
    • The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification
    • De Maayer, P., Chan, W., Blom, J., Venter, S., Duffy, B., Smith, T., et al. (2012a). The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification. BMC Genomics 13:625. doi: 10.1186/1471-2164-13-625.
    • (2012) BMC Genomics , vol.13 , pp. 625
    • De Maayer, P.1    Chan, W.2    Blom, J.3    Venter, S.4    Duffy, B.5    Smith, T.6
  • 15
    • 84857966041 scopus 로고    scopus 로고
    • Complete genome sequence of clinical isolate Pantoea ananatis LMG5342
    • De Maayer, P., Chan, W., Rezzonico, F., Buhlmann, A., Venter, S., Blom, J., et al. (2012b). Complete genome sequence of clinical isolate Pantoea ananatis LMG5342. J. Bacteriol. 194, 1615-1616. doi: 10.1128/JB.06715-11.
    • (2012) J. Bacteriol , vol.194 , pp. 1615-1616
    • De Maayer, P.1    Chan, W.2    Rezzonico, F.3    Buhlmann, A.4    Venter, S.5    Blom, J.6
  • 16
    • 77952555419 scopus 로고    scopus 로고
    • Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback
    • De Maayer, P., Chan, W., Venter, S., Toth, I., Birch, P., Joubert, F., et al. (2010). Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. J. Bacteriol. 192, 2936-2937. doi: 10.1128/JB.00060-10.
    • (2010) J. Bacteriol , vol.192 , pp. 2936-2937
    • De Maayer, P.1    Chan, W.2    Venter, S.3    Toth, I.4    Birch, P.5    Joubert, F.6
  • 17
    • 84902681502 scopus 로고    scopus 로고
    • Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts
    • De Maayer, P., Chan, W. Y., Rubagotti, E., Venter, S. N., Toth, I. K., Birch, P. R., et al. (2014). Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts. BMC Genomics 15:404. doi: 10.1186/1471-2164-15-404.
    • (2014) BMC Genomics , vol.15 , pp. 404
    • De Maayer, P.1    Chan, W.Y.2    Rubagotti, E.3    Venter, S.N.4    Toth, I.K.5    Birch, P.R.6
  • 18
    • 82055181715 scopus 로고    scopus 로고
    • Comparative genomics of the type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins
    • De Maayer, P., Venter, S., Kamber, T., Duffy, B., Coutinho, T., and Smits, T. (2011). Comparative genomics of the type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. BMC Genomics 12:e576. doi: 10.1186/1471-2164-12-576.
    • (2011) BMC Genomics , vol.12
    • De Maayer, P.1    Venter, S.2    Kamber, T.3    Duffy, B.4    Coutinho, T.5    Smits, T.6
  • 19
    • 1842376275 scopus 로고    scopus 로고
    • The modified nucleoside 2-methylthio-N6-isopentenyladenosine in tRNA of Shigella flexneri is required for expression of virulence genes
    • Durand, J. M., Bjork, G. R., Kuwae, A., Yoshikawa, M., and Sasakawa, C. (1997). The modified nucleoside 2-methylthio-N6-isopentenyladenosine in tRNA of Shigella flexneri is required for expression of virulence genes. J. Bacteriol. 179, 5777-5782.
    • (1997) J. Bacteriol , vol.179 , pp. 5777-5782
    • Durand, J.M.1    Bjork, G.R.2    Kuwae, A.3    Yoshikawa, M.4    Sasakawa, C.5
  • 20
    • 84871786739 scopus 로고    scopus 로고
    • New secreted toxin and immunity proteins encoded within the Type VI secretion system gene cluster of Serratia marcescens
    • English, G., Trunk, K., Rao, V., Srikannathasan, V., Hunter, W., and Coulthurst, S. (2012). New secreted toxin and immunity proteins encoded within the Type VI secretion system gene cluster of Serratia marcescens. Mol. Microbiol. 86, 921-936. doi: 10.1111/mmi.12028.
    • (2012) Mol. Microbiol , vol.86 , pp. 921-936
    • English, G.1    Trunk, K.2    Rao, V.3    Srikannathasan, V.4    Hunter, W.5    Coulthurst, S.6
  • 21
    • 0032436996 scopus 로고    scopus 로고
    • Surface protein adhesins of Staphylococcus aureus
    • Foster, T. J., and Hook, M. (1998). Surface protein adhesins of Staphylococcus aureus. Trends Microbiol. 6, 484-488. doi: 10.1016/S0966-842X(98)01400-0.
    • (1998) Trends Microbiol , vol.6 , pp. 484-488
    • Foster, T.J.1    Hook, M.2
  • 23
    • 0001652650 scopus 로고    scopus 로고
    • First report of a leaf blight, seed stalk rot, and bulb decay of onion by pantoea ananas in Georgia
    • Gitaitis, R. D., and Gay, J. D. (1997). First report of a leaf blight, seed stalk rot, and bulb decay of onion by pantoea ananas in Georgia. Plant Dis. 81, 1096-1096. doi: 10.1094/PDIS.1997.81.9.1096C.
    • (1997) Plant Dis , vol.81 , pp. 1096-1096
    • Gitaitis, R.D.1    Gay, J.D.2
  • 26
    • 84856265086 scopus 로고    scopus 로고
    • The complete genome sequence of Pantoea ananatis AJ13355, an organism with great biotechnological potential
    • Hara, Y., Kadotani, N., Izui, H., Katashkina, J., Kuvaeva, T., Andreeva, I., et al. (2012). The complete genome sequence of Pantoea ananatis AJ13355, an organism with great biotechnological potential. Appl. Microbiol. Biotechnol. 93, 331-341. doi: 10.1007/s00253-011-3713-5.
    • (2012) Appl. Microbiol. Biotechnol , vol.93 , pp. 331-341
    • Hara, Y.1    Kadotani, N.2    Izui, H.3    Katashkina, J.4    Kuvaeva, T.5    Andreeva, I.6
  • 27
    • 84857149042 scopus 로고    scopus 로고
    • Dynamics of seed-borne rice endophytes on early plant growth stages
    • Hardoim, P. R., Hardoim, C. C., Van Overbeek, L. S., and Van Elsas, J. D. (2012). Dynamics of seed-borne rice endophytes on early plant growth stages. PLoS ONE 7:e30438. doi: 10.1371/journal.pone.0030438.
    • (2012) PLoS ONE , vol.7
    • Hardoim, P.R.1    Hardoim, C.C.2    Van Overbeek, L.S.3    Van Elsas, J.D.4
  • 28
    • 77952299957 scopus 로고    scopus 로고
    • Prodigal: prokaryotic gene recognition and translation initiation site identification
    • Hyatt, D., Chen, G. L., Locascio, P. F., Land, M. L., Larimer, F. W., and Hauser, L. J. (2010). Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. doi: 10.1186/1471-2105-11-119.
    • (2010) BMC Bioinformatics , vol.11 , pp. 119
    • Hyatt, D.1    Chen, G.L.2    Locascio, P.F.3    Land, M.L.4    Larimer, F.W.5    Hauser, L.J.6
  • 29
    • 78651330433 scopus 로고    scopus 로고
    • Effective-a database of predicted secreted bacterial proteins
    • Jehl, M. A., Arnold, R., and Rattei, T. (2011). Effective-a database of predicted secreted bacterial proteins. Nucleic Acids Res. 39, D591-D595. doi: 10.1093/nar/gkq1154.
    • (2011) Nucleic Acids Res , vol.39 , pp. D591-D595
    • Jehl, M.A.1    Arnold, R.2    Rattei, T.3
  • 30
    • 38549177928 scopus 로고    scopus 로고
    • eggNOG: automated construction and annotation of orthologous groups of genes
    • Jensen, L. J., Julien, P., Kuhn, M., Von Mering, C., Muller, J., Doerks, T., et al. (2008). eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Res. 36, D250-D254. doi: 10.1093/nar/gkm796.
    • (2008) Nucleic Acids Res , vol.36 , pp. D250-D254
    • Jensen, L.J.1    Julien, P.2    Kuhn, M.3    Von Mering, C.4    Muller, J.5    Doerks, T.6
  • 31
    • 79958030351 scopus 로고    scopus 로고
    • Conservation and diversity of seed associated endophytes in Zea across boundaries of evolution, ethnography and ecology
    • Johnston-Monje, D., and Raizada, M. N. (2011). Conservation and diversity of seed associated endophytes in Zea across boundaries of evolution, ethnography and ecology. PLoS ONE 6:e20396. doi: 10.1371/journal.pone.0020396.
    • (2011) PLoS ONE , vol.6
    • Johnston-Monje, D.1    Raizada, M.N.2
  • 32
    • 84863507534 scopus 로고    scopus 로고
    • Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data
    • Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., et al. (2012). Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647-1649. doi: 10.1093/bioinformatics/bts199.
    • (2012) Bioinformatics , vol.28 , pp. 1647-1649
    • Kearse, M.1    Moir, R.2    Wilson, A.3    Stones-Havas, S.4    Cheung, M.5    Sturrock, S.6
  • 33
    • 84862933544 scopus 로고    scopus 로고
    • Draft genome sequence of Pantoea ananatis B1-9, a nonpathogenic plant growth-promoting bacterium
    • Kim, H. J., Lee, J. H., Kang, B. R., Rong, X., Mcspadden Gardener, B. B., Ji, H. J., et al. (2012). Draft genome sequence of Pantoea ananatis B1-9, a nonpathogenic plant growth-promoting bacterium. J. Bacteriol. 194, 729. doi: 10.1128/JB.06484-11.
    • (2012) J. Bacteriol , vol.194 , pp. 729
    • Kim, H.J.1    Lee, J.H.2    Kang, B.R.3    Rong, X.4    Mcspadden Gardener, B.B.5    Ji, H.J.6
  • 34
    • 84874893415 scopus 로고    scopus 로고
    • Symptoms of fern distortion syndrome resulting from inoculation with opportunistic endophytic fluorescent Pseudomonas spp
    • Kloepper, J. W., Mcinroy, J. A., Liu, K., and Hu, C.-H. (2013). Symptoms of fern distortion syndrome resulting from inoculation with opportunistic endophytic fluorescent Pseudomonas spp. PLoS ONE 8:e58531. doi: 10.1371/journal.pone.0058531.
    • (2013) PLoS ONE , vol.8
    • Kloepper, J.W.1    Mcinroy, J.A.2    Liu, K.3    Hu, C.-H.4
  • 36
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: identification of ortholog groups for eukaryotic genomes
    • Li, L., Stoeckert, C. J. Jr., and Roos, D. S. (2003). OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189. doi: 10.1101/gr.1224503.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 37
    • 40749124938 scopus 로고    scopus 로고
    • Prophinder: a computational tool for prophage prediction in prokaryotic genomes
    • Lima-Mendez, G., Van Helden, J., Toussaint, A., and Leplae, R. (2008). Prophinder: a computational tool for prophage prediction in prokaryotic genomes. Bioinformatics 24, 863-865. doi: 10.1093/bioinformatics/btn043.
    • (2008) Bioinformatics , vol.24 , pp. 863-865
    • Lima-Mendez, G.1    Van Helden, J.2    Toussaint, A.3    Leplae, R.4
  • 38
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and Eddy, S. R. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 0955-0964. doi: 10.1093/nar/25.5.0955.
    • (1997) Nucleic Acids Res , vol.25 , pp. 0955-0964
    • Lowe, T.M.1    Eddy, S.R.2
  • 39
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: new solutions for gene finding
    • Lukashin, A., and Borodovsky, M. (1998). GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26, 1107-1115. doi: 10.1093/nar/26.4.1107.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1107-1115
    • Lukashin, A.1    Borodovsky, M.2
  • 41
    • 85027953783 scopus 로고    scopus 로고
    • The endophyte Enterobacter sp. FD17: a maize growth enhancer selected based on rigorous testing of plant beneficial traits and colonization characteristics
    • Naveed, M., Mitter, B., Yousaf, S., Pastar, M., Afzal, M., and Sessitsch, A. (2014). The endophyte Enterobacter sp. FD17: a maize growth enhancer selected based on rigorous testing of plant beneficial traits and colonization characteristics. Biol. Fertil. Soils 50, 249-262. doi: 10.1007/s00374-013-0854-y.
    • (2014) Biol. Fertil. Soils , vol.50 , pp. 249-262
    • Naveed, M.1    Mitter, B.2    Yousaf, S.3    Pastar, M.4    Afzal, M.5    Sessitsch, A.6
  • 42
    • 1842562406 scopus 로고    scopus 로고
    • The Yersinia adhesin YadA collagen-binding domain structure is a novel left-handed parallel β-roll
    • Nummelin, H., Merckel, M. C., Leo, J. C., Lankinen, H., Skurnik, M., and Goldman, A. (2004). The Yersinia adhesin YadA collagen-binding domain structure is a novel left-handed parallel β-roll. EMBO J. 23, 701-711. doi: 10.1038/sj.emboj.7600100.
    • (2004) EMBO J , vol.23 , pp. 701-711
    • Nummelin, H.1    Merckel, M.C.2    Leo, J.C.3    Lankinen, H.4    Skurnik, M.5    Goldman, A.6
  • 43
    • 0034992125 scopus 로고    scopus 로고
    • Detection of a bacterium associated with a leaf spot disease of maize in Brazil
    • Paccola-Meirelles, L. D., Ferreira, A. S., Meirelles, W. F., Marriel, I. E., and Casela, C. R. (2001). Detection of a bacterium associated with a leaf spot disease of maize in Brazil. J. Phytopathol. 149, 275-279. doi: 10.1046/j.1439-0434.2001.00614.x.
    • (2001) J. Phytopathol , vol.149 , pp. 275-279
    • Paccola-Meirelles, L.D.1    Ferreira, A.S.2    Meirelles, W.F.3    Marriel, I.E.4    Casela, C.R.5
  • 45
    • 33744468520 scopus 로고    scopus 로고
    • Bacterial endophytes of the wildflower Crocus albiflorus analyzed by characterization of isolates and by a cultivation-independent approach
    • Reiter, B., and Sessitsch, A. (2006). Bacterial endophytes of the wildflower Crocus albiflorus analyzed by characterization of isolates and by a cultivation-independent approach. Can. J. Microbiol. 52, 140-149. doi: 10.1139/w05-109.
    • (2006) Can. J. Microbiol , vol.52 , pp. 140-149
    • Reiter, B.1    Sessitsch, A.2
  • 46
    • 34848927921 scopus 로고    scopus 로고
    • Isolation of bacterial endophytes from germinated maize kernels
    • Rijavec, T., Lapanje, A., Dermastia, M., and Rupnik, M. (2007). Isolation of bacterial endophytes from germinated maize kernels. Can. J. Microbiol. 53, 802-808. doi: 10.1139/W07-048.
    • (2007) Can. J. Microbiol , vol.53 , pp. 802-808
    • Rijavec, T.1    Lapanje, A.2    Dermastia, M.3    Rupnik, M.4
  • 47
    • 33646249963 scopus 로고    scopus 로고
    • Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover
    • Ryan, R. P., Fouhy, Y., Lucey, J. F., Crossman, L. C., Spiro, S., He, Y.-W., et al. (2006a). Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover. Proc. Natl. Acad. Sci. U.S.A. 103, 6712-6717. doi: 10.1073/pnas.0600345103.
    • (2006) Proc. Natl. Acad. Sci. U.S.A , vol.103 , pp. 6712-6717
    • Ryan, R.P.1    Fouhy, Y.2    Lucey, J.F.3    Crossman, L.C.4    Spiro, S.5    He, Y.-W.6
  • 48
    • 33845400857 scopus 로고    scopus 로고
    • Cyclic Di-GMP signaling in bacteria: recent advances and new puzzles
    • Ryan, R. P., Fouhy, Y., Lucey, J. F., and Dow, J. M. (2006b). Cyclic Di-GMP signaling in bacteria: recent advances and new puzzles. J. Bacteriol. 188, 8327-8334. doi: 10.1128/JB.01079-06.
    • (2006) J. Bacteriol , vol.188 , pp. 8327-8334
    • Ryan, R.P.1    Fouhy, Y.2    Lucey, J.F.3    Dow, J.M.4
  • 49
    • 84857745267 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Sayers, E. W., Barrett, T., Benson, D. A., Bolton, E., Bryant, S. H., Canese, K., et al. (2012). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40, D13-D25. doi: 10.1093/nar/gkr1184.
    • (2012) Nucleic Acids Res , vol.40 , pp. D13-D25
    • Sayers, E.W.1    Barrett, T.2    Benson, D.A.3    Bolton, E.4    Bryant, S.H.5    Canese, K.6
  • 50
    • 0001132773 scopus 로고
    • Bacterial fruitlet brown-rot of pineapple in the Philippines
    • Serrano, F. (1928). Bacterial fruitlet brown-rot of pineapple in the Philippines. Phil. J. Sci. 36, 271-305.
    • (1928) Phil. J. Sci , vol.36 , pp. 271-305
    • Serrano, F.1
  • 51
    • 84878859385 scopus 로고    scopus 로고
    • Evaluation of the roles played by Hcp and VgrG type 6 secretion system effectors in Aeromonas hydrophila SSU pathogenesis
    • Sha, J., Rosenzweig, J., Kozlova, E., Wang, S., Erova, T., Kirtley, M., et al. (2013). Evaluation of the roles played by Hcp and VgrG type 6 secretion system effectors in Aeromonas hydrophila SSU pathogenesis. Microbiology 159, 1120-1135. doi: 10.1099/mic.0.063495-0.
    • (2013) Microbiology , vol.159 , pp. 1120-1135
    • Sha, J.1    Rosenzweig, J.2    Kozlova, E.3    Wang, S.4    Erova, T.5    Kirtley, M.6
  • 52
    • 84895498715 scopus 로고    scopus 로고
    • Comparative genomics of type VI secretion systems in strains of Pantoea ananatis from different environments
    • Shyntum, D., Venter, S., Moleleki, L., Toth, I., and Coutinho, T. (2014). Comparative genomics of type VI secretion systems in strains of Pantoea ananatis from different environments. BMC Genomics 15:163. doi: 10.1186/1471-2164-15-163.
    • (2014) BMC Genomics , vol.15 , pp. 163
    • Shyntum, D.1    Venter, S.2    Moleleki, L.3    Toth, I.4    Coutinho, T.5
  • 53
  • 54
    • 0011901529 scopus 로고
    • Effect of tobacco mosaic virus and bacterial infections on occurrence of graywall of tomato (Erwinia ananas)
    • Stall, R. E., Alexander, L. J., and Hall, C. B. (1969). Effect of tobacco mosaic virus and bacterial infections on occurrence of graywall of tomato (Erwinia ananas). Fla State Hort. Soc. Proc 81, 157-161.
    • (1969) Fla State Hort. Soc. Proc , vol.81 , pp. 157-161
    • Stall, R.E.1    Alexander, L.J.2    Hall, C.B.3
  • 56
    • 14644438364 scopus 로고    scopus 로고
    • Circular genome visualization and exploration using CGView
    • Stothard, P., and Wishart, D. S. (2005). Circular genome visualization and exploration using CGView. Bioinformatics 21, 537-539. doi: 10.1093/bioinformatics/bti054.
    • (2005) Bioinformatics , vol.21 , pp. 537-539
    • Stothard, P.1    Wishart, D.S.2
  • 57
    • 58149191270 scopus 로고    scopus 로고
    • The universal protein resource (UniProt)
    • Uniprot consortium. (2009). The universal protein resource (UniProt) Nucleic Acids Res. 37, D169-D174. doi: 10.1093/nar/gkn664.
    • (2009) Nucleic Acids Res , vol.37 , pp. D169-D174
  • 58
    • 71249083945 scopus 로고    scopus 로고
    • Type VI secretion modulates quorum sensing and stress response in Vibrio anguillarum
    • Weber, B., Hasic, M., Chen, C., Wai, S., and Milton, D. (2009). Type VI secretion modulates quorum sensing and stress response in Vibrio anguillarum. Environ. Microbiol. 11, 3018-3028. doi: 10.1111/j.1462-2920.2009.02005.x.
    • (2009) Environ. Microbiol , vol.11 , pp. 3018-3028
    • Weber, B.1    Hasic, M.2    Chen, C.3    Wai, S.4    Milton, D.5
  • 59
    • 0000786454 scopus 로고
    • Isolation and characterization of strains of Erwinia ananas from honeydew melons
    • Wells, J., Sheng, W., Ceponis, M., and Chen, T. (1987). Isolation and characterization of strains of Erwinia ananas from honeydew melons. Phytopathol 77, 511-514. doi: 10.1094/Phyto-77-511.
    • (1987) Phytopathol , vol.77 , pp. 511-514
    • Wells, J.1    Sheng, W.2    Ceponis, M.3    Chen, T.4
  • 60
    • 0028836170 scopus 로고
    • Endophyte: the evolution of a term, and clarification of its use and definition
    • Wilson, D. (1995). Endophyte: the evolution of a term, and clarification of its use and definition. Oikos 73, 274-276. doi: 10.2307/3545919.
    • (1995) Oikos , vol.73 , pp. 274-276
    • Wilson, D.1
  • 61
    • 84859242353 scopus 로고    scopus 로고
    • Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
    • Wu, M., and Scott, A. J. (2012). Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2. Bioinformatics 28, 1033-1034. doi: 10.1093/bioinformatics/bts079.
    • (2012) Bioinformatics , vol.28 , pp. 1033-1034
    • Wu, M.1    Scott, A.J.2
  • 62
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan-an integration platform for the signature-recognition methods in InterPro
    • Zdobnov, E., and Apweiler, R. (2001). InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17, 847-848. doi: 10.1093/bioinformatics/17.9.847.
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.1    Apweiler, R.2


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