-
1
-
-
60849116153
-
Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology
-
Tseng, T.T., Tyler, B.M. and Setubal, J.C. (2009) Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology. BMC Microbiol., 9(Suppl. 1), S2.
-
(2009)
BMC Microbiol.
, vol.9
, Issue.SUPPL. 1
-
-
Tseng, T.T.1
Tyler, B.M.2
Setubal, J.C.3
-
2
-
-
77951629009
-
The 'when and whereabouts' of injected pathogen effectors
-
Rodrigues, C.D. and Enninga, J. (2010) The 'when and whereabouts' of injected pathogen effectors. Nat. Methods, 7, 267-269.
-
(2010)
Nat. Methods
, vol.7
, pp. 267-269
-
-
Rodrigues, C.D.1
Enninga, J.2
-
3
-
-
75749096311
-
Bacterial manipulation of innate immunity to promote infection
-
Diacovich, L. and Gorvel, J.P. (2010) Bacterial manipulation of innate immunity to promote infection. Nat. Rev., 8, 117-128.
-
(2010)
Nat. Rev.
, vol.8
, pp. 117-128
-
-
Diacovich, L.1
Gorvel, J.P.2
-
4
-
-
75949092121
-
Anti-virulence strategies to combat bacteria-mediated disease
-
Rasko, D.A. and Sperandio, V. (2010) Anti-virulence strategies to combat bacteria-mediated disease. Nat. Rev. Drug Discov., 9, 117-128.
-
(2010)
Nat. Rev. Drug Discov.
, vol.9
, pp. 117-128
-
-
Rasko, D.A.1
Sperandio, V.2
-
5
-
-
77950859427
-
Bacterial secretion systems with an emphasis on the chlamydial Type III secretion system
-
Beeckman, D.S. and Vanrompay, D.C. (2010) Bacterial secretion systems with an emphasis on the chlamydial Type III secretion system. Curr. Issues Mol. Biol., 12, 17-41.
-
(2010)
Curr. Issues Mol. Biol.
, vol.12
, pp. 17-41
-
-
Beeckman, D.S.1
Vanrompay, D.C.2
-
6
-
-
58149284564
-
A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000
-
Almeida, N.F., Yan, S., Lindeberg, M., Studholme, D.J., Schneider, D.J., Condon, B., Liu, H., Viana, C.J., Warren, A., Evans, C. et al. (2009) A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Mol. Plant Microbe Interact., 22, 52-62.
-
(2009)
Mol. Plant Microbe Interact.
, vol.22
, pp. 52-62
-
-
Almeida, N.F.1
Yan, S.2
Lindeberg, M.3
Studholme, D.J.4
Schneider, D.J.5
Condon, B.6
Liu, H.7
Viana, C.J.8
Warren, A.9
Evans, C.10
-
7
-
-
38549107537
-
VFDB 2008 release: An enhanced web-based resource for comparative pathogenomics
-
Yang, J., Chen, L., Sun, L., Yu, J. and Jin, Q. (2008) VFDB 2008 release: An enhanced web-based resource for comparative pathogenomics. Nucleic Acids Res., 36, D539-D542.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Yang, J.1
Chen, L.2
Sun, L.3
Yu, J.4
Jin, Q.5
-
8
-
-
77955477942
-
Computational prediction and experimental assessment of secreted/surface proteins from Mycobacterium tuberculosis H37Rv
-
Vizcaino, C., Restrepo-Montoya, D., Rodriguez, D., Nino, L.F., Ocampo, M., Vanegas, M., Reguero, M.T., Martinez, N.L., Patarroyo, M.E. and Patarroyo, M.A. (2010) Computational prediction and experimental assessment of secreted/surface proteins from Mycobacterium tuberculosis H37Rv. PLoS Computat. Biol., 6, e1000824.
-
(2010)
PLoS Computat. Biol.
, vol.6
-
-
Vizcaino, C.1
Restrepo-Montoya, D.2
Rodriguez, D.3
Nino, L.F.4
Ocampo, M.5
Vanegas, M.6
Reguero, M.T.7
Martinez, N.L.8
Patarroyo, M.E.9
Patarroyo, M.A.10
-
9
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
Bendtsen, J.D., Nielsen, H., von Heijne, G. and Brunak, S. (2004) Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol., 340, 783-795.
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
Von Heijne, G.3
Brunak, S.4
-
10
-
-
66349124179
-
Sequence-based prediction of type III secreted proteins
-
Arnold, R., Brandmaier, S., Kleine, F., Tischler, P., Heinz, E., Behrens, S., Niinikoski, A., Mewes, H.W., Horn, M. and Rattei, T. (2009) Sequence-based prediction of type III secreted proteins. PLoS Pathog., 5, e1000376.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Arnold, R.1
Brandmaier, S.2
Kleine, F.3
Tischler, P.4
Heinz, E.5
Behrens, S.6
Niinikoski, A.7
Mewes, H.W.8
Horn, M.9
Rattei, T.10
-
11
-
-
67650151451
-
Prediction of type III secretion signals in genomes of Gram-negative bacteria
-
Lower, M. and Schneider, G. (2009) Prediction of type III secretion signals in genomes of Gram-negative bacteria. PloS one, 4, e5917.
-
(2009)
PloS one
, vol.4
-
-
Lower, M.1
Schneider, G.2
-
12
-
-
66349123567
-
Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems
-
Samudrala, R., Heffron, F. and McDermott, J.E. (2009) Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems. PLoS Pathog., 5, e1000375.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Samudrala, R.1
Heffron, F.2
McDermott, J.E.3
-
13
-
-
60049089360
-
Coxiella type IV secretion and cellular microbiology
-
Voth, D.E. and Heinzen, R.A. (2009) Coxiella type IV secretion and cellular microbiology. Curr. Opin. Microbiol., 12, 74-80.
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 74-80
-
-
Voth, D.E.1
Heinzen, R.A.2
-
14
-
-
10044263696
-
Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity
-
Cazalet, C., Rusniok, C., Bruggemann, H., Zidane, N., Magnier, A., Ma, L., Tichit, M., Jarraud, S., Bouchier, C., Vandenesch, F. et al. (2004) Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity. Nat. Genet., 36, 1165-1173.
-
(2004)
Nat. Genet.
, vol.36
, pp. 1165-1173
-
-
Cazalet, C.1
Rusniok, C.2
Bruggemann, H.3
Zidane, N.4
Magnier, A.5
Ma, L.6
Tichit, M.7
Jarraud, S.8
Bouchier, C.9
Vandenesch, F.10
-
15
-
-
0033057517
-
Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer
-
Ponting, C.P., Aravind, L., Schultz, J., Bork, P. and Koonin, E.V. (1999) Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. J. Mol. Biol., 289, 729-745.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 729-745
-
-
Ponting, C.P.1
Aravind, L.2
Schultz, J.3
Bork, P.4
Koonin, E.V.5
-
16
-
-
46249111623
-
Ankyrin repeat proteins comprise a diverse family of bacterial type IV effectors
-
Pan, X., Luhrmann, A., Satoh, A., Laskowski-Arce, M.A. and Roy, C.R. (2008) Ankyrin repeat proteins comprise a diverse family of bacterial type IV effectors. Science, 320, 1651-1654.
-
(2008)
Science
, vol.320
, pp. 1651-1654
-
-
Pan, X.1
Luhrmann, A.2
Satoh, A.3
Laskowski-Arce, M.A.4
Roy, C.R.5
-
17
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt, K.D., Tatusova, T. and Maglott, D.R. (2007) NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 35, D61-D65.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
18
-
-
75549090603
-
The Pfam protein families database
-
Finn, R.D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J.E., Gavin, O.L., Gunasekaran, P., Ceric, G., Forslund, K. et al. (2010) The Pfam protein families database. Nucleic Acids Res., 38, D211-D222.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
-
19
-
-
75549086850
-
SIMAP-A comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
-
Rattei, T., Tischler, P., Gotz, S., Jehl, M.A., Hoser, J., Arnold, R., Conesa, A. and Mewes, H.W. (2010) SIMAP-a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters. Nucleic Acids Res., 38, D223-D226.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Rattei, T.1
Tischler, P.2
Gotz, S.3
Jehl, M.A.4
Hoser, J.5
Arnold, R.6
Conesa, A.7
Mewes, H.W.8
-
20
-
-
75549085495
-
EggNOG v2.0: Extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations
-
Muller, J., Szklarczyk, D., Julien, P., Letunic, I., Roth, A., Kuhn, M., Powell, S., von Mering, C., Doerks, T., Jensen, L.J. et al. (2010) eggNOG v2.0: Extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. Nucleic Acids Res., 38, D190-D195.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Muller, J.1
Szklarczyk, D.2
Julien, P.3
Letunic, I.4
Roth, A.5
Kuhn, M.6
Powell, S.7
Von Mering, C.8
Doerks, T.9
Jensen, L.J.10
-
21
-
-
75549088687
-
Database resources of the National Center for Biotechnology Information
-
Sayers, E.W., Barrett, T., Benson, D.A., Bolton, E., Bryant, S.H., Canese, K., Chetvernin, V., Church, D.M., Dicuccio, M., Federhen, S. et al. (2010) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 38, D5-D16.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
Canese, K.6
Chetvernin, V.7
Church, D.M.8
Dicuccio, M.9
Federhen, S.10
-
22
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa, M., Goto, S., Furumichi, M., Tanabe, M. and Hirakawa, M. (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res., 38, D355-D360.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
|