Genome sequence of the biocontrol agent Pantoea vagans strain C9-1

Journal of Bacteriology

Volumn 192, Issue 24, 2010, Pages 6486-6487

  Smits, Theo H M ^a   Rezzonico, Fabio ^a   Kamber, Tim ^a   Goesmann, Alexander ^b   Ishimaru, Carol A ^c   Stockwell, Virginia O ^d   Frey, Jürg E ^a   Duffy, Brion ^a  

^a Plant Protection Division   (Switzerland)

^b BIELEFELD UNIVERSITY   (Germany)

^c OREGON STATE UNIVERSITY   (United States)

^d UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APPLE; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; ENTEROBACTERIACEAE; EPIPHYTE; ERWINIA AMYLOVORA; FIRE BLIGHT; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PANTOEA AGGLOMERANS; PANTOEA VAGANS; PEAR; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

BACTERIAL PROTEINS; ERWINIA AMYLOVORA; GENE EXPRESSION REGULATION, BACTERIAL; GENOME, BACTERIAL; MALUS; MOLECULAR SEQUENCE DATA; PANTOEA; PEST CONTROL, BIOLOGICAL; PLANT DISEASES; PYRUS;

ENTEROBACTERIACEAE; ERWINIA AMYLOVORA; MALUS X DOMESTICA; NEGIBACTERIA; PANTOEA; PANTOEA AGGLOMERANS; PYRUS;

EID: 78649670864     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01122-10     Document Type: Article

References (14)

1. Badger, J. H., and G. J. Olsen. 1999. CRITICA: coding region identification tool invoking comparative analysis. Mol. Biol. Evol. 16:512-524.
2. Barash, I., and S. Manulis-Sasson. 2009. Recent evolution of bacterial pathogens: the gall-forming Pantoea agglomerans case. Annu. Rev. Phytopathol. 47:133-152.
3. De Maayer, P., W. Y. Chan, S. N. Venter, I. K. Toth, P. R. J. Birch, F. Joubert, and T. A. Coutinho. 2010. Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. J. Bacteriol. 192:2936-2937.
4. Guo, M., S. Manulis, H. Mor, and I. Barash. 2002. The presence of diverse IS elements and an avrPphD homologue that acts as a virulence factor on the pathogenicity plasmid of Erwinia herbicola pv. gypsophilae. Mol. Plant Microbe Interact. 15:709-716.
5. Ishimaru, C. A., E. J. Klos, and R. R. Brubaker. 1988. Multiple antibiotic production by Erwinia herbicola. Phytopathology 78:746-750.
6. Johnson, K. B., and V. O. Stockwell. 1998. Management of fire blight: a case study in microbial ecology. Annu. Rev. Phytopathol. 36:227-248.
7. Kanehisa, M., S. Goto, S. Kawashima, and A. Nakaya. 2002. The KEGG databases at GenomeNet. Nucleic Acids Res. 30:42-46.
8. McHardy, A. C., A. Goesmann, A. Pühler, and F. Meyer. 2004. Development of joint application strategies for two microbial gene finders. Bioinformatics 20:1622-1631.
9. Meyer, F., A. Goesmann, A. C. McHardy, D. Bartels, T. Bekel, J. Clausen, J. Kalinowski, B. Linke, O. Rupp, R. Giegerich, and A. Pühler. 2003. GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Res. 31:2187-2195.
10. Rezzonico, F., T. H. M. Smits, E. Montesinos, J. E. Frey, and B. Duffy. 2009. Genotypic comparison of Pantoea agglomerans plant and clinical strains to address biosafety and taxonomic issues. BMC Microbiol. 9:204.
11. Salzberg, S. L., A. L. Delcher, S. Kasif, and O. White. 1998. Microbial gene identification using interpolated Markov models. Nucleic Acids Res. 26:544-548.
12. T and comparative genomic insights into plant pathogenicity. BMC Genomics 11:2.
13. Smits, T. H. M., F. Rezzonico, T. Kamber, J. Blom, A. Goesmann, J. E. Frey, and B. Duffy. 2010. Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp. Mol. Plant Microbe Interact. 23:384-393.
14. Toth, I. K., L. Pritchard, and P. J. R. Birch. 2006. Comparative genomics reveals what makes an enterobacterial plant pathogen. Annu. Rev. Phytopathol. 44:305-336.