-
1
-
-
0033779765
-
Single-molecule imaging of EGFR signalling on the surface of living cells
-
Sako Y, Minoghchi S, Yanagida T. Single-molecule imaging of EGFR signalling on the surface of living cells. Nat Cell Biol. 2000;2:168-72.
-
(2000)
Nat Cell Biol
, vol.2
, pp. 168-172
-
-
Sako, Y.1
Minoghchi, S.2
Yanagida, T.3
-
2
-
-
78649927344
-
Superresolution imaging of chemical synapses in the brain
-
Dani A, Huang B, Bergan J, Dulac C, Zhuang X. Superresolution imaging of chemical synapses in the brain. Neuron. 2010;68:843-56.
-
(2010)
Neuron
, vol.68
, pp. 843-856
-
-
Dani, A.1
Huang, B.2
Bergan, J.3
Dulac, C.4
Zhuang, X.5
-
3
-
-
77249114260
-
Variability in gene expression underlies incomplete penetrance
-
Raj A, Rifkin SA, Andersen E, van Oudenaarden A. Variability in gene expression underlies incomplete penetrance. Nature. 2010;463:913-8.
-
(2010)
Nature
, vol.463
, pp. 913-918
-
-
Raj, A.1
Rifkin, S.A.2
Andersen, E.3
Oudenaarden, A.4
-
4
-
-
53349161901
-
Imaging individual mRNA molecules using multiple singly labeled probes
-
Raj A, van den Bogaard P, Rifkin SA, van Oudenaarden A, Tyagi S. Imaging individual mRNA molecules using multiple singly labeled probes. Nat Methods. 2008;5:877-9.
-
(2008)
Nat Methods
, vol.5
, pp. 877-879
-
-
Raj, A.1
Bogaard, P.2
Rifkin, S.A.3
Oudenaarden, A.4
Tyagi, S.5
-
5
-
-
84873801555
-
Systematic identification of signal-activated stochastic gene regulation
-
Neuert G, Munsky B, Tan RZ, Teytelman L, Khammash M, van Oudenaarden A. Systematic identification of signal-activated stochastic gene regulation. Science. 2013;339:584-7.
-
(2013)
Science
, vol.339
, pp. 584-587
-
-
Neuert, G.1
Munsky, B.2
Tan, R.Z.3
Teytelman, L.4
Khammash, M.5
Oudenaarden, A.6
-
6
-
-
84857395611
-
Single-cell analysis reveals that Noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment
-
Bumgarner SL, Neuert G, Voight BF, Symbor-Nagrabska A, Grisafi P, van Oudenaarden A, et al. Single-cell analysis reveals that Noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment. Mol Cell. 2012;45:470-82.
-
(2012)
Mol Cell
, vol.45
, pp. 470-482
-
-
Bumgarner, S.L.1
Neuert, G.2
Voight, B.F.3
Symbor-Nagrabska, A.4
Grisafi, P.5
Oudenaarden, A.6
-
7
-
-
67650328126
-
Imaging transcription in living cells
-
Darzacq X, Yao J, Larson DR, Causse SZ, Bosanac L, de Turris V, et al. Imaging transcription in living cells. Annu Rev Biophys. 2009;38:173-96.
-
(2009)
Annu Rev Biophys
, vol.38
, pp. 173-196
-
-
Darzacq, X.1
Yao, J.2
Larson, D.R.3
Causse, S.Z.4
Bosanac, L.5
Turris, V.6
-
9
-
-
84887876822
-
Feedback control of gene expression variability in the Caenorhabditis elegans Wnt pathway
-
Ji N, Middelkoop TC, Mentink RA, Betist MC, Tonegawa S, Mooijman D, et al. Feedback control of gene expression variability in the Caenorhabditis elegans Wnt pathway. Cell. 2013;155:869-80.
-
(2013)
Cell
, vol.155
, pp. 869-880
-
-
Ji, N.1
Middelkoop, T.C.2
Mentink, R.A.3
Betist, M.C.4
Tonegawa, S.5
Mooijman, D.6
-
10
-
-
84872415180
-
Robustness and Epistasis in the C. elegans vulval signaling network revealed by pathway dosage modulation
-
Barkoulas M, van Zon JS, Milloz J, van Oudenaarden A, Félix M-A. Robustness and Epistasis in the C. elegans vulval signaling network revealed by pathway dosage modulation. Dev Cell. 2013;24:64-75.
-
(2013)
Dev Cell
, vol.24
, pp. 64-75
-
-
Barkoulas, M.1
Zon, J.S.2
Milloz, J.3
Oudenaarden, A.4
Félix, M.-A.5
-
11
-
-
84863202666
-
Single-cell systems biology by super-resolution imaging and combinatorial labeling
-
Lubeck E, Cai L. Single-cell systems biology by super-resolution imaging and combinatorial labeling. Nat Methods. 2012;9:743-8.
-
(2012)
Nat Methods
, vol.9
, pp. 743-748
-
-
Lubeck, E.1
Cai, L.2
-
12
-
-
84902108866
-
The rhino-deadlock-cutoff complex licenses Noncanonical transcription of dual-strand piRNA clusters in Drosophila
-
Mohn F, Sienski G, Handler D, Brennecke J. The rhino-deadlock-cutoff complex licenses Noncanonical transcription of dual-strand piRNA clusters in Drosophila. Cell. 2014;157:1364-79.
-
(2014)
Cell
, vol.157
, pp. 1364-1379
-
-
Mohn, F.1
Sienski, G.2
Handler, D.3
Brennecke, J.4
-
13
-
-
84902965988
-
Differential expression of Galectin-1 and Galectin-3 in canine non-malignant and malignant mammary tissues and in progression to metastases in mammary tumors
-
Oliveira JTD, Matos AJD, Barros R, Ribeiro C, Chen A, Hespanhol V, et al. Differential expression of Galectin-1 and Galectin-3 in canine non-malignant and malignant mammary tissues and in progression to metastases in mammary tumors. Anticancer Res. 2014;34:2211-21.
-
(2014)
Anticancer Res
, vol.34
, pp. 2211-2221
-
-
Oliveira, J.T.D.1
Matos, A.J.D.2
Barros, R.3
Ribeiro, C.4
Chen, A.5
Hespanhol, V.6
-
14
-
-
84874893549
-
Placental specific mrna in the maternal circulation are globally dysregulated in pregnancies complicated by fetal growth restriction
-
Whitehead CL, Walker SP, Ye L, Mendis S, Kaitu'u-Lino TJ, Lappas M, et al. Placental specific mrna in the maternal circulation are globally dysregulated in pregnancies complicated by fetal growth restriction. J Clin Endocrinol Metab. 2013;98:E429-36.
-
(2013)
J Clin Endocrinol Metab
, vol.98
, pp. E429-E436
-
-
Whitehead, C.L.1
Walker, S.P.2
Ye, L.3
Mendis, S.4
Kaitu'u-Lino, T.J.5
Lappas, M.6
-
15
-
-
84857228854
-
Identifying fluorescently labeled single molecules in image stacks using machine learning
-
Rifkin SA. Identifying fluorescently labeled single molecules in image stacks using machine learning. Methods Mol Biol. 2011;772:329-48.
-
(2011)
Methods Mol Biol
, vol.772
, pp. 329-348
-
-
Rifkin, S.A.1
-
16
-
-
84875724143
-
FISH-quant: automatic counting of transcripts in 3D FISH images
-
Mueller F, Senecal A, Tantale K, Marie-Nelly H, Ly N, Collin O, et al. FISH-quant: automatic counting of transcripts in 3D FISH images. Nat Methods. 2013;10:277-8.
-
(2013)
Nat Methods
, vol.10
, pp. 277-278
-
-
Mueller, F.1
Senecal, A.2
Tantale, K.3
Marie-Nelly, H.4
Ly, N.5
Collin, O.6
-
17
-
-
84888414498
-
Visualization and analysis of mRNA molecules using fluorescence in situ hybridization in Saccharomyces cerevisiae
-
McIsaac RS, Silverman SJ, Parsons L, Xu P, Briehof R, McClean MN, et al. Visualization and analysis of mRNA molecules using fluorescence in situ hybridization in Saccharomyces cerevisiae. J Vis Exp. 2013;76:e50382.
-
(2013)
J Vis Exp
, vol.76
, pp. e50382
-
-
McIsaac, R.S.1
Silverman, S.J.2
Parsons, L.3
Xu, P.4
Briehof, R.5
McClean, M.N.6
-
18
-
-
85028230272
-
-
Version 7.10.0 (R2010a). Natick, Massachusetts: The MathWorks Inc.
-
MATLAB. Version 7.10.0 (R2010a). Natick, Massachusetts: The MathWorks Inc.; 2010.
-
(2010)
-
-
-
19
-
-
0035478854
-
Random forests
-
Breiman L. Random forests. Mach Learn. 2001;45:5-32.
-
(2001)
Mach Learn
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
20
-
-
0003684449
-
-
2nd ed. New York, NY: Springer
-
Hastie T, Tibshirani R, Friedman J. The elements of statistical learning: data mining, inference, and prediction. 2nd ed. New York, NY: Springer; 2011.
-
(2011)
The elements of statistical learning: data mining, inference, and prediction
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
24
-
-
84907612592
-
Towards a consolidation of worldwide journal rankings - a classification using random forests and aggregate rating via data envelopment analysis
-
Tüselmann H, Sinkovics RR, Pishchulov G. Towards a consolidation of worldwide journal rankings - a classification using random forests and aggregate rating via data envelopment analysis. Omega. 2015;51:11-23.
-
(2015)
Omega
, vol.51
, pp. 11-23
-
-
Tüselmann, H.1
Sinkovics, R.R.2
Pishchulov, G.3
-
25
-
-
38449114584
-
Random forests for classification in ecology
-
Cutler DR, Edwards TC, Beard KH, Cutler A, Hess KT, Gibson J, et al. Random forests for classification in ecology. Ecology. 2007;88:2783-92.
-
(2007)
Ecology
, vol.88
, pp. 2783-2792
-
-
Cutler, D.R.1
Edwards, T.C.2
Beard, K.H.3
Cutler, A.4
Hess, K.T.5
Gibson, J.6
-
26
-
-
84861730860
-
Random forests for genomic data analysis
-
Chen X, Ishwaran H. Random forests for genomic data analysis. Genomics. 2012;99:323-9.
-
(2012)
Genomics
, vol.99
, pp. 323-329
-
-
Chen, X.1
Ishwaran, H.2
-
27
-
-
77958064179
-
Mining data with random forests: a survey and results of new tests
-
Verikas A, Gelzinis A, Bacauskiene M. Mining data with random forests: a survey and results of new tests. Pattern Recogn. 2011;44:330-49.
-
(2011)
Pattern Recogn
, vol.44
, pp. 330-349
-
-
Verikas, A.1
Gelzinis, A.2
Bacauskiene, M.3
-
28
-
-
84884905386
-
Random forests for real time 3D face analysis
-
Fanelli G, Dantone M, Gall J, Fossati A, Gool LV. Random forests for real time 3D face analysis. Int J Comput Vis. 2012;101:437-58.
-
(2012)
Int J Comput Vis
, vol.101
, pp. 437-458
-
-
Fanelli, G.1
Dantone, M.2
Gall, J.3
Fossati, A.4
Gool, L.V.5
-
29
-
-
84867880438
-
An introduction to random forests for multi-class object detection
-
In: Dellaert F, Frahm J-M, Pollefeys M, Leal-Taixé L, Rosenhahn B, editors. Heidelberg: Springer
-
Gall J, Razavi N, Gool LV. An introduction to random forests for multi-class object detection. In: Dellaert F, Frahm J-M, Pollefeys M, Leal-Taixé L, Rosenhahn B, editors. Outdoor and large-scale real-world scene analysis. Heidelberg: Springer; 2012. p. 243-63.
-
(2012)
Outdoor and large-scale real-world scene analysis
, pp. 243-263
-
-
Gall, J.1
Razavi, N.2
Gool, L.V.3
-
30
-
-
0042346121
-
Tree induction for probability-based ranking
-
Provost F, Domingos P. Tree induction for probability-based ranking. Mach Learn. 2003;52:199-215.
-
(2003)
Mach Learn
, vol.52
, pp. 199-215
-
-
Provost, F.1
Domingos, P.2
-
31
-
-
84855764322
-
Probability machines: consistent probability estimation using nonparametric learning machines
-
Malley JD, Kruppa J, Dasgupta A, Malley KG, Ziegler A. Probability machines: consistent probability estimation using nonparametric learning machines. Methods Inf Med. 2012;51:74-81.
-
(2012)
Methods Inf Med
, vol.51
, pp. 74-81
-
-
Malley, J.D.1
Kruppa, J.2
Dasgupta, A.3
Malley, K.G.4
Ziegler, A.5
-
32
-
-
84860701629
-
Analysis of a random forests model
-
Biau G. Analysis of a random forests model. J Mach Learn Res. 2012;13:1063-95.
-
(2012)
J Mach Learn Res
, vol.13
, pp. 1063-1095
-
-
Biau, G.1
-
33
-
-
84878300417
-
Consumer credit risk: individual probability estimates using machine learning
-
Kruppa J, Schwarz A, Arminger G, Ziegler A. Consumer credit risk: individual probability estimates using machine learning. Expert Syst Appl. 2013;40:5125-31.
-
(2013)
Expert Syst Appl
, vol.40
, pp. 5125-5131
-
-
Kruppa, J.1
Schwarz, A.2
Arminger, G.3
Ziegler, A.4
-
34
-
-
84867401885
-
Calibrating classifier scores into probabilities
-
In: Decker PDR, Lenz PDH-J, editors. Heidelberg: Springer
-
Gebel M, Weihs C. Calibrating classifier scores into probabilities. In: Decker PDR, Lenz PDH-J, editors. Advances in data analysis. Heidelberg: Springer; 2007. p. 141-8.
-
(2007)
Advances in data analysis
, pp. 141-148
-
-
Gebel, M.1
Weihs, C.2
-
37
-
-
0003243224
-
Probabilistic outputs for support vector machines and comparisons to regularized likelihood methods
-
Cambridge: MIT Press
-
Platt JC. Probabilistic outputs for support vector machines and comparisons to regularized likelihood methods. In: Advances in Large Margin Classifiers. Cambridge: MIT Press; 1999. p. 61-74.
-
(1999)
Advances in Large Margin Classifiers
, pp. 61-74
-
-
Platt, J.C.1
-
40
-
-
56349092327
-
Standard errors for bagged and random forest estimators
-
Sexton J, Laake P. Standard errors for bagged and random forest estimators. Comput Stat Data Anal. 2009;53:801-11.
-
(2009)
Comput Stat Data Anal
, vol.53
, pp. 801-811
-
-
Sexton, J.1
Laake, P.2
-
41
-
-
84902788102
-
Confidence intervals for random forests: the jackknife and the infinitesimal jackknife
-
Wager S, Hastie T, Efron B. Confidence intervals for random forests: the jackknife and the infinitesimal jackknife. J Mach Learn Res. 2014;15:1625-51.
-
(2014)
J Mach Learn Res
, vol.15
, pp. 1625-1651
-
-
Wager, S.1
Hastie, T.2
Efron, B.3
-
42
-
-
77951101695
-
Transcript counting in single cells reveals dynamics of rDNA transcription
-
Tan RZ, van Oudenaarden A. Transcript counting in single cells reveals dynamics of rDNA transcription. Mol Syst Biol. 2010; doi:10.1038/msb.2010.14.
-
(2010)
Mol Syst Biol
-
-
Tan, R.Z.1
van Oudenaarden, A.2
-
43
-
-
84861170964
-
Single-mRNA counting using fluorescent in situ hybridization in budding yeast
-
Trcek T, Chao JA, Larson DR, Park HY, Zenklusen D, Shenoy SM, et al. Single-mRNA counting using fluorescent in situ hybridization in budding yeast. Nat Protoc. 2012;7:408-19.
-
(2012)
Nat Protoc
, vol.7
, pp. 408-419
-
-
Trcek, T.1
Chao, J.A.2
Larson, D.R.3
Park, H.Y.4
Zenklusen, D.5
Shenoy, S.M.6
-
44
-
-
0036231415
-
Precise nanometer localization analysis for individual fluorescent probes
-
Thompson RE, Larson DR, Webb WW. Precise nanometer localization analysis for individual fluorescent probes. Biophys J. 2002;82:2775-83.
-
(2002)
Biophys J
, vol.82
, pp. 2775-2783
-
-
Thompson, R.E.1
Larson, D.R.2
Webb, W.W.3
-
45
-
-
57149101122
-
Single-RNA counting reveals alternative modes of gene expression in yeast
-
Zenklusen D, Larson DR, Singer RH. Single-RNA counting reveals alternative modes of gene expression in yeast. Nat Struct Mol Biol. 2008;15:1263-71.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 1263-1271
-
-
Zenklusen, D.1
Larson, D.R.2
Singer, R.H.3
|