메뉴 건너뛰기




Volumn 29, Issue 6, 2015, Pages 525-539

Computational and biophysical approaches to protein-protein interaction inhibition of Plasmodium falciparum AMA1/RON2 complex

Author keywords

Apicomplexa parasites; Fluorescence anisotropy based assay; Invasion; Malaria; Plasmodium falciparum AMA1 RON2 interaction; Virtual screening

Indexed keywords

ANISOTROPY; CRYSTAL STRUCTURE; DIGITAL LIBRARIES; FLUORESCENCE; LIBRARIES; PEPTIDES;

EID: 84930872420     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-015-9842-7     Document Type: Article
Times cited : (16)

References (71)
  • 2
    • 84879677704 scopus 로고    scopus 로고
    • Epidemiology: Resistance mapping in malaria
    • 1:CAS:528:DC%2BC3sXhtVWgtrzK
    • Bright AT, Winzeler EA (2013) Epidemiology: resistance mapping in malaria. Nature 498(7455):446-447. doi: 10.1038/498446b
    • (2013) Nature , vol.498 , Issue.7455 , pp. 446-447
    • Bright, A.T.1    Winzeler, E.A.2
  • 3
    • 0017879439 scopus 로고
    • Erythrocyte entry by malarial parasites. A moving junction between erythrocyte and parasite
    • 1:STN:280:DyaE1c7psVeitg%3D%3D
    • Aikawa M, Miller LH, Johnson J, Rabbege J (1978) Erythrocyte entry by malarial parasites. A moving junction between erythrocyte and parasite. J Cell Biol 77(1):72-82
    • (1978) J Cell Biol , vol.77 , Issue.1 , pp. 72-82
    • Aikawa, M.1    Miller, L.H.2    Johnson, J.3    Rabbege, J.4
  • 4
    • 79955948463 scopus 로고    scopus 로고
    • The moving junction of apicomplexan parasites: A key structure for invasion
    • 1:CAS:528:DC%2BC3MXmslWqtrs%3D
    • Besteiro S, Dubremetz JF, Lebrun M (2011) The moving junction of apicomplexan parasites: a key structure for invasion. Cell Microbiol 13(6):797-805. doi: 10.1111/j.1462-5822.2011.01597.x
    • (2011) Cell Microbiol , vol.13 , Issue.6 , pp. 797-805
    • Besteiro, S.1    Dubremetz, J.F.2    Lebrun, M.3
  • 6
    • 59249104006 scopus 로고    scopus 로고
    • Rhoptry neck protein RON2 forms a complex with microneme protein AMA1 in Plasmodium falciparum merozoites
    • 1:CAS:528:DC%2BD1MXhsFKmtLg%3D
    • Cao J, Kaneko O, Thongkukiatkul A, Tachibana M, Otsuki H, Gao Q, Tsuboi T, Torii M (2009) Rhoptry neck protein RON2 forms a complex with microneme protein AMA1 in Plasmodium falciparum merozoites. Parasitol Int 58(1):29-35. doi: 10.1016/j.parint.2008.09.005
    • (2009) Parasitol Int , vol.58 , Issue.1 , pp. 29-35
    • Cao, J.1    Kaneko, O.2    Thongkukiatkul, A.3    Tachibana, M.4    Otsuki, H.5    Gao, Q.6    Tsuboi, T.7    Torii, M.8
  • 7
    • 60349121591 scopus 로고    scopus 로고
    • Export of a Toxoplasma gondii rhoptry neck protein complex at the host cell membrane to form the moving junction during invasion
    • Besteiro S, Michelin A, Poncet J, Dubremetz JF, Lebrun M (2009) Export of a Toxoplasma gondii rhoptry neck protein complex at the host cell membrane to form the moving junction during invasion. PLoS Pathog 5(2):e1000309. doi: 10.1371/journal.ppat.1000309
    • (2009) PLoS Pathog , vol.5 , Issue.2 , pp. 1000309
    • Besteiro, S.1    Michelin, A.2    Poncet, J.3    Dubremetz, J.F.4    Lebrun, M.5
  • 9
    • 79952234824 scopus 로고    scopus 로고
    • The C-terminus of Toxoplasma RON2 provides the crucial link between AMA1 and the host-associated invasion complex
    • 1:CAS:528:DC%2BC3MXisVertbw%3D
    • Tyler JS, Boothroyd JC (2011) The C-terminus of Toxoplasma RON2 provides the crucial link between AMA1 and the host-associated invasion complex. PLoS Pathog 7(2):e1001282. doi: 10.1371/journal.ppat.1001282
    • (2011) PLoS Pathog , vol.7 , Issue.2 , pp. 1001282
    • Tyler, J.S.1    Boothroyd, J.C.2
  • 12
    • 84898545498 scopus 로고    scopus 로고
    • Conditional expression of apical membrane antigen 1 in Plasmodium falciparum shows it is required for erythrocyte invasion by merozoites
    • 1:CAS:528:DC%2BC2cXmtFSls7g%3D
    • Yap A, Azevedo MF, Gilson PR, Weiss GE, O'Neill MT, Wilson DW, Crabb BS, Cowman AF (2014) Conditional expression of apical membrane antigen 1 in Plasmodium falciparum shows it is required for erythrocyte invasion by merozoites. Cell Microbiol 16(5):642-656. doi: 10.1111/cmi.12287
    • (2014) Cell Microbiol , vol.16 , Issue.5 , pp. 642-656
    • Yap, A.1    Azevedo, M.F.2    Gilson, P.R.3    Weiss, G.E.4    O'Neill, M.T.5    Wilson, D.W.6    Crabb, B.S.7    Cowman, A.F.8
  • 14
    • 77952007992 scopus 로고    scopus 로고
    • Interaction between Plasmodium falciparum apical membrane antigen 1 and the rhoptry neck protein complex defines a key step in the erythrocyte invasion process of malaria parasites
    • 1:CAS:528:DC%2BC3cXlsVOhtr0%3D
    • Richard D, MacRaild CA, Riglar DT, Chan JA, Foley M, Baum J, Ralph SA, Norton RS, Cowman AF (2010) Interaction between Plasmodium falciparum apical membrane antigen 1 and the rhoptry neck protein complex defines a key step in the erythrocyte invasion process of malaria parasites. J Biol Chem 285(19):14815-14822. doi: 10.1074/jbc.M109.080770
    • (2010) J Biol Chem , vol.285 , Issue.19 , pp. 14815-14822
    • Richard, D.1    Macraild, C.A.2    Riglar, D.T.3    Chan, J.A.4    Foley, M.5    Baum, J.6    Ralph, S.A.7    Norton, R.S.8    Cowman, A.F.9
  • 16
    • 79960668340 scopus 로고    scopus 로고
    • Host cell invasion by apicomplexan parasites: Insights from the co-structure of AMA1 with a RON2 peptide
    • 1:CAS:528:DC%2BC3MXovF2muro%3D
    • Tonkin ML, Roques M, Lamarque MH, Pugniere M, Douguet D, Crawford J, Lebrun M, Boulanger MJ (2011) Host cell invasion by apicomplexan parasites: insights from the co-structure of AMA1 with a RON2 peptide. Science 333(6041):463-467. doi: 10.1126/science.1204988
    • (2011) Science , vol.333 , Issue.6041 , pp. 463-467
    • Tonkin, M.L.1    Roques, M.2    Lamarque, M.H.3    Pugniere, M.4    Douguet, D.5    Crawford, J.6    Lebrun, M.7    Boulanger, M.J.8
  • 18
    • 84875484319 scopus 로고    scopus 로고
    • New targets for drug discovery against malaria
    • 1:CAS:528:DC%2BC3sXmtVentL0%3D
    • Santos G, Torres NV (2013) New targets for drug discovery against malaria. PLoS One 8(3):e59968. doi: 10.1371/journal.pone.0059968
    • (2013) PLoS One , vol.8 , Issue.3 , pp. 59968
    • Santos, G.1    Torres, N.V.2
  • 19
    • 80051699901 scopus 로고    scopus 로고
    • Apical membrane antigen 1 as an anti-malarial drug target
    • 1:CAS:528:DC%2BC3MXhtV2gsL3I
    • Macraild CA, Anders RF, Foley M, Norton RS (2011) Apical membrane antigen 1 as an anti-malarial drug target. Curr Top Med Chem 11(16):2039-2047
    • (2011) Curr Top Med Chem , vol.11 , Issue.16 , pp. 2039-2047
    • Macraild, C.A.1    Anders, R.F.2    Foley, M.3    Norton, R.S.4
  • 20
    • 38349117119 scopus 로고    scopus 로고
    • Apical membrane antigen 1: A malaria vaccine candidate in review
    • 1:CAS:528:DC%2BD1cXhsV2jsrk%3D
    • Remarque EJ, Faber BW, Kocken CH, Thomas AW (2008) Apical membrane antigen 1: a malaria vaccine candidate in review. Trends Parasitol 24(2):74-84. doi: 10.1016/j.pt.2007.12.002
    • (2008) Trends Parasitol , vol.24 , Issue.2 , pp. 74-84
    • Remarque, E.J.1    Faber, B.W.2    Kocken, C.H.3    Thomas, A.W.4
  • 21
    • 84904288773 scopus 로고    scopus 로고
    • Immunization with a functional protein complex required for erythrocyte invasion protects against lethal malaria
    • 1:CAS:528:DC%2BC2cXhtVaisrfF
    • Srinivasan P, Ekanem E, Diouf A, Tonkin ML, Miura K, Boulanger MJ, Long CA, Narum DL, Miller LH (2014) Immunization with a functional protein complex required for erythrocyte invasion protects against lethal malaria. Proc Natl Acad Sci USA 111(28):10311-10316. doi: 10.1073/pnas.1409928111
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.28 , pp. 10311-10316
    • Srinivasan, P.1    Ekanem, E.2    Diouf, A.3    Tonkin, M.L.4    Miura, K.5    Boulanger, M.J.6    Long, C.A.7    Narum, D.L.8    Miller, L.H.9
  • 25
    • 84930866051 scopus 로고    scopus 로고
    • Bioinformatic identification of peptidomimetic-based inhibitors against Plasmodium falciparum antigen AMA1
    • Alam A (2014) Bioinformatic identification of peptidomimetic-based inhibitors against Plasmodium falciparum antigen AMA1. Malar Res Treat 2014:642391. doi: 10.1155/2014/642391
    • (2014) Malar Res Treat , vol.2014 , pp. 642391
    • Alam, A.1
  • 26
    • 84857712365 scopus 로고    scopus 로고
    • Protein-protein interaction inhibitors get into the groove
    • 1:CAS:528:DC%2BC38XivFygsL0%3D
    • Mullard A (2012) Protein-protein interaction inhibitors get into the groove. Nat Rev Drug Discov 11(3):173-175. doi: 10.1038/nrd3680
    • (2012) Nat Rev Drug Discov , vol.11 , Issue.3 , pp. 173-175
    • Mullard, A.1
  • 27
    • 52649083344 scopus 로고    scopus 로고
    • Discovery of ABT-263, a Bcl-family protein inhibitor: Observations on targeting a large protein-protein interaction
    • 1:CAS:528:DC%2BD1MXkvFCmsLg%3D
    • Wendt MD (2008) Discovery of ABT-263, a Bcl-family protein inhibitor: observations on targeting a large protein-protein interaction. Expert Opin Drug Discov 3(9):1123-1143. doi: 10.1517/17460441.3.9.1123
    • (2008) Expert Opin Drug Discov , vol.3 , Issue.9 , pp. 1123-1143
    • Wendt, M.D.1
  • 28
    • 70450169243 scopus 로고    scopus 로고
    • Inhibition of protein-protein interactions using designed molecules
    • 1:CAS:528:DC%2BD1MXhsVanurrN
    • Wilson AJ (2009) Inhibition of protein-protein interactions using designed molecules. Chem Soc Rev 38(12):3289-3300. doi: 10.1039/b807197g
    • (2009) Chem Soc Rev , vol.38 , Issue.12 , pp. 3289-3300
    • Wilson, A.J.1
  • 29
    • 84884587933 scopus 로고    scopus 로고
    • IPPI-DB: A manually curated and interactive database of small non-peptide inhibitors of protein-protein interactions
    • 1:CAS:528:DC%2BC3sXpt12jur4%3D
    • Labbe CM, Laconde G, Kuenemann MA, Villoutreix BO, Sperandio O (2013) iPPI-DB: a manually curated and interactive database of small non-peptide inhibitors of protein-protein interactions. Drug Discov Today 18(19-20):958-968. doi: 10.1016/j.drudis.2013.05.003
    • (2013) Drug Discov Today , vol.18 , Issue.19-20 , pp. 958-968
    • Labbe, C.M.1    Laconde, G.2    Kuenemann, M.A.3    Villoutreix, B.O.4    Sperandio, O.5
  • 30
    • 84897621963 scopus 로고    scopus 로고
    • Structure-based approach to improve a small-molecule inhibitor by the use of a competitive peptide ligand
    • 1:CAS:528:DC%2BC2cXhs1Cqtrk%3D
    • Ono K, Takeuchi K, Ueda H, Morita Y, Tanimura R, Shimada I, Takahashi H (2014) Structure-based approach to improve a small-molecule inhibitor by the use of a competitive peptide ligand. Angew Chem Int Ed Engl 53(10):2597-2601. doi: 10.1002/anie.201310749
    • (2014) Angew Chem Int Ed Engl , vol.53 , Issue.10 , pp. 2597-2601
    • Ono, K.1    Takeuchi, K.2    Ueda, H.3    Morita, Y.4    Tanimura, R.5    Shimada, I.6    Takahashi, H.7
  • 31
    • 84857584191 scopus 로고    scopus 로고
    • Winning the arms race by improving drug discovery against mutating targets
    • 1:CAS:528:DC%2BC3MXhsVSks73O
    • Anderson AC (2012) Winning the arms race by improving drug discovery against mutating targets. ACS Chem Biol 7(2):278-288. doi: 10.1021/cb200394t
    • (2012) ACS Chem Biol , vol.7 , Issue.2 , pp. 278-288
    • Anderson, A.C.1
  • 32
    • 77949743743 scopus 로고    scopus 로고
    • Atomic analysis of protein-protein interfaces with known inhibitors: The 2P2I database
    • Bourgeas R, Basse MJ, Morelli X, Roche P (2010) Atomic analysis of protein-protein interfaces with known inhibitors: the 2P2I database. PLoS One 5(3):e9598. doi: 10.1371/journal.pone.0009598
    • (2010) PLoS One , vol.5 , Issue.3 , pp. 9598
    • Bourgeas, R.1    Basse, M.J.2    Morelli, X.3    Roche, P.4
  • 34
    • 24644523245 scopus 로고    scopus 로고
    • Structure of AMA1 from Plasmodium falciparum reveals a clustering of polymorphisms that surround a conserved hydrophobic pocket
    • 1:CAS:528:DC%2BD2MXhtVWktLbI
    • Bai T, Becker M, Gupta A, Strike P, Murphy VJ, Anders RF, Batchelor AH (2005) Structure of AMA1 from Plasmodium falciparum reveals a clustering of polymorphisms that surround a conserved hydrophobic pocket. Proc Natl Acad Sci USA 102(36):12736-12741. doi: 10.1073/pnas.0501808102
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.36 , pp. 12736-12741
    • Bai, T.1    Becker, M.2    Gupta, A.3    Strike, P.4    Murphy, V.J.5    Anders, R.F.6    Batchelor, A.H.7
  • 35
    • 37349008490 scopus 로고    scopus 로고
    • Structure of the malaria antigen AMA1 in complex with a growth-inhibitory antibody
    • 1:CAS:528:DC%2BD2sXhtFKmt7zO
    • Coley AM, Gupta A, Murphy VJ, Bai T, Kim H, Foley M, Anders RF, Batchelor AH (2007) Structure of the malaria antigen AMA1 in complex with a growth-inhibitory antibody. PLoS Pathog 3(9):1308-1319. doi: 10.1371/journal.ppat.0030138
    • (2007) PLoS Pathog , vol.3 , Issue.9 , pp. 1308-1319
    • Coley, A.M.1    Gupta, A.2    Murphy, V.J.3    Bai, T.4    Kim, H.5    Foley, M.6    Anders, R.F.7    Batchelor, A.H.8
  • 37
    • 77952015851 scopus 로고    scopus 로고
    • Structural characterization of apical membrane antigen 1 (AMA1) from Toxoplasma gondii
    • 1:CAS:528:DC%2BC3cXlslSqtrs%3D
    • Crawford J, Tonkin ML, Grujic O, Boulanger MJ (2010) Structural characterization of apical membrane antigen 1 (AMA1) from Toxoplasma gondii. J Biol Chem 285(20):15644-15652. doi: 10.1074/jbc.M109.092619
    • (2010) J Biol Chem , vol.285 , Issue.20 , pp. 15644-15652
    • Crawford, J.1    Tonkin, M.L.2    Grujic, O.3    Boulanger, M.J.4
  • 38
    • 84873051813 scopus 로고    scopus 로고
    • Babesia divergens and Neospora caninum apical membrane antigen 1 structures reveal selectivity and plasticity in apicomplexan parasite host cell invasion
    • 1:CAS:528:DC%2BC38XhvVeksrvE
    • Tonkin ML, Crawford J, Lebrun ML, Boulanger MJ (2013) Babesia divergens and Neospora caninum apical membrane antigen 1 structures reveal selectivity and plasticity in apicomplexan parasite host cell invasion. Protein Sci 22(1):114-127. doi: 10.1002/pro.2193
    • (2013) Protein Sci , vol.22 , Issue.1 , pp. 114-127
    • Tonkin, M.L.1    Crawford, J.2    Lebrun, M.L.3    Boulanger, M.J.4
  • 40
  • 41
    • 79952205663 scopus 로고    scopus 로고
    • Peptide inhibitors of the malaria surface protein, apical membrane antigen 1: Identification of key binding residues
    • 1:CAS:528:DC%2BC3MXitlKrtrs%3D
    • Lee EF, Yao S, Sabo JK, Fairlie WD, Stevenson RA, Harris KS, Anders RF, Foley M, Norton RS (2011) Peptide inhibitors of the malaria surface protein, apical membrane antigen 1: identification of key binding residues. Biopolymers 95(5):354-364. doi: 10.1002/bip.21582
    • (2011) Biopolymers , vol.95 , Issue.5 , pp. 354-364
    • Lee, E.F.1    Yao, S.2    Sabo, J.K.3    Fairlie, W.D.4    Stevenson, R.A.5    Harris, K.S.6    Anders, R.F.7    Foley, M.8    Norton, R.S.9
  • 42
    • 84860538154 scopus 로고    scopus 로고
    • Structural biology and drug discovery for protein-protein interactions
    • 1:CAS:528:DC%2BC38XlsFCkt70%3D
    • Jubb H, Higueruelo AP, Winter A, Blundell TL (2012) Structural biology and drug discovery for protein-protein interactions. Trends Pharmacol Sci 33(5):241-248. doi: 10.1016/j.tips.2012.03.006
    • (2012) Trends Pharmacol Sci , vol.33 , Issue.5 , pp. 241-248
    • Jubb, H.1    Higueruelo, A.P.2    Winter, A.3    Blundell, T.L.4
  • 43
    • 84875436143 scopus 로고    scopus 로고
    • Inhibition of alpha-helix-mediated protein-protein interactions using designed molecules
    • 1:CAS:528:DC%2BC3sXislWms7c%3D
    • Azzarito V, Long K, Murphy NS, Wilson AJ (2013) Inhibition of alpha-helix-mediated protein-protein interactions using designed molecules. Nat Chem 5(3):161-173. doi: 10.1038/nchem.1568
    • (2013) Nat Chem , vol.5 , Issue.3 , pp. 161-173
    • Azzarito, V.1    Long, K.2    Murphy, N.S.3    Wilson, A.J.4
  • 44
    • 0033773937 scopus 로고    scopus 로고
    • Fluorescence polarization and anisotropy in high throughput screening: Perspectives and primer
    • 1:CAS:528:DC%2BD3cXosFSlsL8%3D
    • Owicki JC (2000) Fluorescence polarization and anisotropy in high throughput screening: perspectives and primer. J Biomol Screen 5(5):297-306
    • (2000) J Biomol Screen , vol.5 , Issue.5 , pp. 297-306
    • Owicki, J.C.1
  • 45
    • 77951983007 scopus 로고    scopus 로고
    • Drug- and lead-likeness, target class, and molecular diversity analysis of 7.9 million commercially available organic compounds provided by 29 suppliers
    • 1:CAS:528:DC%2BC3cXjsFSksrY%3D
    • Chuprina A, Lukin O, Demoiseaux R, Buzko A, Shivanyuk A (2010) Drug- and lead-likeness, target class, and molecular diversity analysis of 7.9 million commercially available organic compounds provided by 29 suppliers. J Chem Inform Model 50(4):470-479. doi: 10.1021/ci900464s
    • (2010) J Chem Inform Model , vol.50 , Issue.4 , pp. 470-479
    • Chuprina, A.1    Lukin, O.2    Demoiseaux, R.3    Buzko, A.4    Shivanyuk, A.5
  • 46
    • 84861729758 scopus 로고    scopus 로고
    • E-Drug 3D: 3D structure collections dedicated to drug repurposing and fragment-based drug design
    • 1:CAS:528:DC%2BC38Xns1Sltr4%3D
    • Pihan E, Colliandre L, Guichou JF, Douguet D (2012) e-Drug 3D: 3D structure collections dedicated to drug repurposing and fragment-based drug design. Bioinformatics 28(11):1540-1541. doi: 10.1093/bioinformatics/bts186
    • (2012) Bioinformatics , vol.28 , Issue.11 , pp. 1540-1541
    • Pihan, E.1    Colliandre, L.2    Guichou, J.F.3    Douguet, D.4
  • 47
    • 77951986384 scopus 로고    scopus 로고
    • Conformer generation with OMEGA: Algorithm and validation using high quality structures from the Protein Databank and Cambridge Structural Database
    • 1:CAS:528:DC%2BC3cXjtlaisrY%3D
    • Hawkins PC, Skillman AG, Warren GL, Ellingson BA, Stahl MT (2010) Conformer generation with OMEGA: algorithm and validation using high quality structures from the Protein Databank and Cambridge Structural Database. J Chem Inform Model 50(4):572-584. doi: 10.1021/ci100031x
    • (2010) J Chem Inform Model , vol.50 , Issue.4 , pp. 572-584
    • Hawkins, P.C.1    Skillman, A.G.2    Warren, G.L.3    Ellingson, B.A.4    Stahl, M.T.5
  • 48
    • 31444452744 scopus 로고
    • Automatic generation of 3D-atomic coordinates for organic molecules
    • 1:CAS:528:DyaK3sXmtlCn
    • Gasteiger J, Rudolph C, Sadowski J (1990) Automatic generation of 3D-atomic coordinates for organic molecules. Tetrahedron Comput Method 3:537-547
    • (1990) Tetrahedron Comput Method , vol.3 , pp. 537-547
    • Gasteiger, J.1    Rudolph, C.2    Sadowski, J.3
  • 49
    • 52049125711 scopus 로고    scopus 로고
    • Pharao: Pharmacophore alignment and optimization
    • 1:CAS:528:DC%2BD1cXhtFCgur%2FE
    • Taminau J, Thijs G, De Winter H (2008) Pharao: pharmacophore alignment and optimization. J Mol Graph Model 27(2):161-169. doi: 10.1016/j.jmgm.2008.04.003
    • (2008) J Mol Graph Model , vol.27 , Issue.2 , pp. 161-169
    • Taminau, J.1    Thijs, G.2    De Winter, H.3
  • 50
    • 79959746008 scopus 로고    scopus 로고
    • Pharmer: Efficient and exact pharmacophore search
    • 1:CAS:528:DC%2BC3MXmvFSltL4%3D
    • Koes DR, Camacho CJ (2011) Pharmer: efficient and exact pharmacophore search. J Chem Inform Model 51(6):1307-1314. doi: 10.1021/ci200097m
    • (2011) J Chem Inform Model , vol.51 , Issue.6 , pp. 1307-1314
    • Koes, D.R.1    Camacho, C.J.2
  • 51
    • 79959947612 scopus 로고    scopus 로고
    • Swimming into peptidomimetic chemical space using pepMMsMIMIC
    • 1:CAS:528:DC%2BC3MXosVOmsrw%3D (Web Server issue)
    • Floris M, Masciocchi J, Fanton M, Moro S (2011) Swimming into peptidomimetic chemical space using pepMMsMIMIC. Nucleic Acids Res 39:W261-269. doi: 10.1093/nar/gkr287 (Web Server issue)
    • (2011) Nucleic Acids Res , vol.39 , pp. 261-269
    • Floris, M.1    Masciocchi, J.2    Fanton, M.3    Moro, S.4
  • 52
    • 62449330667 scopus 로고    scopus 로고
    • Empirical scoring functions for advanced protein-ligand docking with PLANTS
    • 1:CAS:528:DC%2BD1MXisVSquw%3D%3D
    • Korb O, Stutzle T, Exner TE (2009) Empirical scoring functions for advanced protein-ligand docking with PLANTS. J Chem Inform Model 49(1):84-96. doi: 10.1021/ci800298z
    • (2009) J Chem Inform Model , vol.49 , Issue.1 , pp. 84-96
    • Korb, O.1    Stutzle, T.2    Exner, T.E.3
  • 53
    • 0033614004 scopus 로고    scopus 로고
    • Asparagine and glutamine: Using hydrogen atom contacts in the choice of side-chain amide orientation
    • 1:CAS:528:DyaK1MXhtV2ht7g%3D
    • Word JM, Lovell SC, Richardson JS, Richardson DC (1999) Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. J Mol Biol 285(4):1735-1747. doi: 10.1006/jmbi.1998.2401
    • (1999) J Mol Biol , vol.285 , Issue.4 , pp. 1735-1747
    • Word, J.M.1    Lovell, S.C.2    Richardson, J.S.3    Richardson, D.C.4
  • 54
    • 77954282775 scopus 로고    scopus 로고
    • E-LEA3D: A computational-aided drug design web server
    • 1:CAS:528:DC%2BC3cXotVSqur0%3D (Web Server issue)
    • Douguet D (2010) e-LEA3D: a computational-aided drug design web server. Nucleic Acids Res 38:W615-621. doi: 10.1093/nar/gkq322 (Web Server issue)
    • (2010) Nucleic Acids Res , vol.38 , pp. 615-621
    • Douguet, D.1
  • 55
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
    • 1:CAS:528:DyaK2MXltVCgtLc%3D
    • Wallace AC, Laskowski RA, Thornton JM (1995) LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Protein Eng 8(2):127-134
    • (1995) Protein Eng , vol.8 , Issue.2 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 57
    • 15744363198 scopus 로고    scopus 로고
    • Refolding, purification, and crystallization of apical membrane antigen 1 from Plasmodium falciparum
    • 1:CAS:528:DC%2BD2MXivV2iur4%3D
    • Gupta A, Bai T, Murphy V, Strike P, Anders RF, Batchelor AH (2005) Refolding, purification, and crystallization of apical membrane antigen 1 from Plasmodium falciparum. Protein Expr Purif 41(1):186-198. doi: 10.1016/j.pep.2005.01.005
    • (2005) Protein Expr Purif , vol.41 , Issue.1 , pp. 186-198
    • Gupta, A.1    Bai, T.2    Murphy, V.3    Strike, P.4    Anders, R.F.5    Batchelor, A.H.6
  • 58
    • 44849083214 scopus 로고    scopus 로고
    • Novel analytic criteria and effective plate designs for quality control in genome-scale RNAi screens
    • 1:CAS:528:DC%2BD1cXotlCms7Y%3D
    • Zhang XD (2008) Novel analytic criteria and effective plate designs for quality control in genome-scale RNAi screens. J Biomol Screen 13(5):363-377. doi: 10.1177/1087057108317062
    • (2008) J Biomol Screen , vol.13 , Issue.5 , pp. 363-377
    • Zhang, X.D.1
  • 59
    • 0015861774 scopus 로고
    • Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction
    • 1:CAS:528:DyaE2cXhtVGgs7c%3D
    • Cheng Y, Prusoff WH (1973) Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction. Biochem Pharmacol 22(23):3099-3108
    • (1973) Biochem Pharmacol , vol.22 , Issue.23 , pp. 3099-3108
    • Cheng, Y.1    Prusoff, W.H.2
  • 60
    • 0018001339 scopus 로고
    • Simultaneous analysis of families of sigmoidal curves: Application to bioassay, radioligand assay, and physiological dose-response curves
    • 1:CAS:528:DyaE1cXlslGrtrw%3D
    • DeLean A, Munson PJ, Rodbard D (1978) Simultaneous analysis of families of sigmoidal curves: application to bioassay, radioligand assay, and physiological dose-response curves. Am J Physiol 235(2):E97-E102
    • (1978) Am J Physiol , vol.235 , Issue.2 , pp. 97-E102
    • Delean, A.1    Munson, P.J.2    Rodbard, D.3
  • 63
    • 33646242741 scopus 로고    scopus 로고
    • Assessing the scaffold diversity of screening libraries
    • 1:CAS:528:DC%2BD28XlvFSntg%3D%3D
    • Krier M, Bret G, Rognan D (2006) Assessing the scaffold diversity of screening libraries. J Chem Inform Model 46(2):512-524. doi: 10.1021/ci050352v
    • (2006) J Chem Inform Model , vol.46 , Issue.2 , pp. 512-524
    • Krier, M.1    Bret, G.2    Rognan, D.3
  • 64
    • 33749628876 scopus 로고    scopus 로고
    • Managing, profiling and analyzing a library of 2.6 million compounds gathered from 32 chemical providers
    • 1:CAS:528:DC%2BD28Xht1GrtLvL
    • Monge A, Arrault A, Marot C, Morin-Allory L (2006) Managing, profiling and analyzing a library of 2.6 million compounds gathered from 32 chemical providers. Mol Divers 10(3):389-403. doi: 10.1007/s11030-006-9033-5
    • (2006) Mol Divers , vol.10 , Issue.3 , pp. 389-403
    • Monge, A.1    Arrault, A.2    Marot, C.3    Morin-Allory, L.4
  • 65
    • 84879189895 scopus 로고    scopus 로고
    • The open access malaria box: A drug discovery catalyst for neglected diseases
    • 1:CAS:528:DC%2BC3sXhtVCms7zI
    • Spangenberg T, Burrows JN, Kowalczyk P, McDonald S, Wells TN, Willis P (2013) The open access malaria box: a drug discovery catalyst for neglected diseases. PLoS One 8(6):e62906. doi: 10.1371/journal.pone.0062906
    • (2013) PLoS One , vol.8 , Issue.6 , pp. 62906
    • Spangenberg, T.1    Burrows, J.N.2    Kowalczyk, P.3    McDonald, S.4    Wells, T.N.5    Willis, P.6
  • 66
    • 77649233664 scopus 로고    scopus 로고
    • Rationalizing the chemical space of protein-protein interaction inhibitors
    • 1:CAS:528:DC%2BC3cXjtFyns70%3D
    • Sperandio O, Reynes CH, Camproux AC, Villoutreix BO (2010) Rationalizing the chemical space of protein-protein interaction inhibitors. Drug Discov Today 15(5-6):220-229. doi: 10.1016/j.drudis.2009.11.007
    • (2010) Drug Discov Today , vol.15 , Issue.5-6 , pp. 220-229
    • Sperandio, O.1    Reynes, C.H.2    Camproux, A.C.3    Villoutreix, B.O.4
  • 67
    • 83055176741 scopus 로고    scopus 로고
    • Synergy of the antiretroviral protease inhibitor indinavir and chloroquine against malaria parasites in vitro and in vivo
    • Li X, He Z, Chen L, Li Y, Li Q, Zhao S, Tao Z, Hu W, Qin L, Chen X (2011) Synergy of the antiretroviral protease inhibitor indinavir and chloroquine against malaria parasites in vitro and in vivo. Parasitol Res 109(6):1519-1524. doi: 10.1007/s00436-011-2427-z
    • (2011) Parasitol Res , vol.109 , Issue.6 , pp. 1519-1524
    • Li, X.1    He, Z.2    Chen, L.3    Li, Y.4    Li, Q.5    Zhao, S.6    Tao, Z.7    Hu, W.8    Qin, L.9    Chen, X.10
  • 68
    • 0033003760 scopus 로고    scopus 로고
    • A simple statistical parameter for use in evaluation and validation of high throughput screening assays
    • Zhang JH, Chung TD, Oldenburg KR (1999) A simple statistical parameter for use in evaluation and validation of high throughput screening assays. J Biomol Screen 4(2):67-73
    • (1999) J Biomol Screen , vol.4 , Issue.2 , pp. 67-73
    • Zhang, J.H.1    Chung, T.D.2    Oldenburg, K.R.3
  • 69
    • 70349756972 scopus 로고    scopus 로고
    • Atomic interactions and profile of small molecules disrupting protein-protein interfaces: The TIMBAL database
    • 1:CAS:528:DC%2BD1MXhtlehu7vP
    • Higueruelo AP, Schreyer A, Bickerton GR, Pitt WR, Groom CR, Blundell TL (2009) Atomic interactions and profile of small molecules disrupting protein-protein interfaces: the TIMBAL database. Chem Biol Drug Des 74(5):457-467. doi: 10.1111/j.1747-0285.2009.00889.x
    • (2009) Chem Biol Drug des , vol.74 , Issue.5 , pp. 457-467
    • Higueruelo, A.P.1    Schreyer, A.2    Bickerton, G.R.3    Pitt, W.R.4    Groom, C.R.5    Blundell, T.L.6
  • 70


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.