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Volumn 14, Issue 6, 2015, Pages 2425-2436

Clusterin glycopeptide variant characterization reveals significant site-specific glycan changes in the plasma of clear cell renal cell carcinoma

Author keywords

Clear cell renal cell carcinoma; clusterin; collision induced dissociation; glycoforms; N glycan; site specific analysis

Indexed keywords

CLUSTERIN; GLYCAN; GLYCOPEPTIDE; LECTIN; POLYSACCHARIDE;

EID: 84930606343     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr501104j     Document Type: Article
Times cited : (22)

References (65)
  • 1
    • 33644657042 scopus 로고    scopus 로고
    • Kidney cancer: Identification of novel targets for therapy
    • Weiss, R. H.; Lin, P. Y. Kidney cancer: identification of novel targets for therapy Kidney Int. 2006, 69, 224-32
    • (2006) Kidney Int. , vol.69 , pp. 224-232
    • Weiss, R.H.1    Lin, P.Y.2
  • 2
    • 0034796962 scopus 로고    scopus 로고
    • The changing natural history of renal cell carcinoma
    • Pantuck, A. J.; Zisman, A.; Belldegrun, A. S. The changing natural history of renal cell carcinoma J. Urol. 2001, 166, 1611-23
    • (2001) J. Urol. , vol.166 , pp. 1611-1623
    • Pantuck, A.J.1    Zisman, A.2    Belldegrun, A.S.3
  • 4
    • 34250903593 scopus 로고    scopus 로고
    • Congenital disorders of glycosylation: CDG-I, CDG-II, and beyond
    • Freeze, H. H. Congenital disorders of glycosylation: CDG-I, CDG-II, and beyond Curr. Mol. Med. 2007, 7, 389-96
    • (2007) Curr. Mol. Med. , vol.7 , pp. 389-396
    • Freeze, H.H.1
  • 5
    • 34247530859 scopus 로고    scopus 로고
    • Virus glycosylation: Role in virulence and immune interactions
    • Vigerust, D. J.; Shepherd, V. L. Virus glycosylation: role in virulence and immune interactions Trends Microbiol. 2007, 15, 211-8
    • (2007) Trends Microbiol. , vol.15 , pp. 211-218
    • Vigerust, D.J.1    Shepherd, V.L.2
  • 6
    • 79957879496 scopus 로고    scopus 로고
    • Cell surface glycan-lectin interactions in tumor metastasis
    • Rambaruth, N. D.; Dwek, M. V. Cell surface glycan-lectin interactions in tumor metastasis Acta Histochem. 2011, 113, 591-600
    • (2011) Acta Histochem. , vol.113 , pp. 591-600
    • Rambaruth, N.D.1    Dwek, M.V.2
  • 7
    • 61849174789 scopus 로고    scopus 로고
    • Glycoproteomics for prostate cancer detection: Changes in serum PSA glycosylation patterns
    • Meany, D. L.; Zhang, Z.; Sokoll, L. J.; Zhang, H.; Chan, D. W. Glycoproteomics for prostate cancer detection: changes in serum PSA glycosylation patterns J. Proteome Res. 2009, 8, 613-9
    • (2009) J. Proteome Res. , vol.8 , pp. 613-619
    • Meany, D.L.1    Zhang, Z.2    Sokoll, L.J.3    Zhang, H.4    Chan, D.W.5
  • 8
    • 0033057177 scopus 로고    scopus 로고
    • The carcinoembryonic antigen (CEA) family: Structures, suggested functions and expression in normal and malignant tissues
    • Hammarstrom, S. The carcinoembryonic antigen (CEA) family: structures, suggested functions and expression in normal and malignant tissues Semin. Cancer Biol. 1999, 9, 67-81
    • (1999) Semin. Cancer Biol. , vol.9 , pp. 67-81
    • Hammarstrom, S.1
  • 10
    • 18444410242 scopus 로고    scopus 로고
    • Quantification and utility of monosialylated alpha-fetoprotein in the diagnosis of hepatocellular carcinoma with nondiagnostic serum total alpha-fetoprotein
    • Poon, T. C.; Mok, T. S.; Chan, A. T.; Chan, C. M.; Leong, V.; Tsui, S. H.; Leung, T. W.; Wong, H. T.; Ho, S. K.; Johnson, P. J. Quantification and utility of monosialylated alpha-fetoprotein in the diagnosis of hepatocellular carcinoma with nondiagnostic serum total alpha-fetoprotein Clin. Chem. 2002, 48, 1021-7
    • (2002) Clin. Chem. , vol.48 , pp. 1021-1027
    • Poon, T.C.1    Mok, T.S.2    Chan, A.T.3    Chan, C.M.4    Leong, V.5    Tsui, S.H.6    Leung, T.W.7    Wong, H.T.8    Ho, S.K.9    Johnson, P.J.10
  • 11
    • 84860239658 scopus 로고    scopus 로고
    • Aberrant glycosylation associated with enzymes as cancer biomarkers
    • Meany, D. L.; Chan, D. W. Aberrant glycosylation associated with enzymes as cancer biomarkers Clin. Proteomics 2011, 8, 7
    • (2011) Clin. Proteomics , vol.8 , pp. 7
    • Meany, D.L.1    Chan, D.W.2
  • 12
    • 79957953469 scopus 로고    scopus 로고
    • 2D-LC analysis of BRP 3 erythropoietin N-glycosylation using anion exchange fractionation and hydrophilic interaction UPLC reveals long poly- N -acetyl lactosamine extensions
    • Bones, J.; McLoughlin, N.; Hilliard, M.; Wynne, K.; Karger, B. L.; Rudd, P. M. 2D-LC analysis of BRP 3 erythropoietin N-glycosylation using anion exchange fractionation and hydrophilic interaction UPLC reveals long poly- N -acetyl lactosamine extensions Anal. Chem. 2011, 83, 4154-62
    • (2011) Anal. Chem. , vol.83 , pp. 4154-4162
    • Bones, J.1    McLoughlin, N.2    Hilliard, M.3    Wynne, K.4    Karger, B.L.5    Rudd, P.M.6
  • 13
    • 76149084829 scopus 로고    scopus 로고
    • GlycoSpectrumScan: Fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA
    • Deshpande, N.; Jensen, P. H.; Packer, N. H.; Kolarich, D. GlycoSpectrumScan: fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA J. Proteome Res. 2010, 9, 1063-75
    • (2010) J. Proteome Res. , vol.9 , pp. 1063-1075
    • Deshpande, N.1    Jensen, P.H.2    Packer, N.H.3    Kolarich, D.4
  • 15
    • 77956014533 scopus 로고    scopus 로고
    • The lectin riddle: Glycoproteins fractionated from complex mixtures have similar glycomic profiles
    • Lee, A.; Nakano, M.; Hincapie, M.; Kolarich, D.; Baker, M. S.; Hancock, W. S.; Packer, N. H. The lectin riddle: glycoproteins fractionated from complex mixtures have similar glycomic profiles OMICS 2010, 14, 487-99
    • (2010) OMICS , vol.14 , pp. 487-499
    • Lee, A.1    Nakano, M.2    Hincapie, M.3    Kolarich, D.4    Baker, M.S.5    Hancock, W.S.6    Packer, N.H.7
  • 16
    • 42149132652 scopus 로고    scopus 로고
    • Site-specific analysis of N-glycans on haptoglobin in sera of patients with pancreatic cancer: A novel approach for the development of tumor markers
    • Nakano, M.; Nakagawa, T.; Ito, T.; Kitada, T.; Hijioka, T.; Kasahara, A.; Tajiri, M.; Wada, Y.; Taniguchi, N.; Miyoshi, E. Site-specific analysis of N-glycans on haptoglobin in sera of patients with pancreatic cancer: a novel approach for the development of tumor markers Int. J. Cancer 2008, 122, 2301-9
    • (2008) Int. J. Cancer , vol.122 , pp. 2301-2309
    • Nakano, M.1    Nakagawa, T.2    Ito, T.3    Kitada, T.4    Hijioka, T.5    Kasahara, A.6    Tajiri, M.7    Wada, Y.8    Taniguchi, N.9    Miyoshi, E.10
  • 18
    • 84857860667 scopus 로고    scopus 로고
    • Semi-automated identification of N-glycopeptides by hydrophilic interaction chromatography, nano-reverse-phase LC-MS/MS, and glycan database search
    • Pompach, P.; Chandler, K. B.; Lan, R.; Edwards, N.; Goldman, R. Semi-automated identification of N-glycopeptides by hydrophilic interaction chromatography, nano-reverse-phase LC-MS/MS, and glycan database search J. Proteome Res. 2012, 11, 1728-40
    • (2012) J. Proteome Res. , vol.11 , pp. 1728-1740
    • Pompach, P.1    Chandler, K.B.2    Lan, R.3    Edwards, N.4    Goldman, R.5
  • 19
    • 84862168794 scopus 로고    scopus 로고
    • Structural analysis of N- and O-glycans released from glycoproteins
    • Jensen, P. H.; Karlsson, N. G.; Kolarich, D.; Packer, N. H. Structural analysis of N- and O-glycans released from glycoproteins Nat. Protoc. 2012, 7, 1299-310
    • (2012) Nat. Protoc. , vol.7 , pp. 1299-1310
    • Jensen, P.H.1    Karlsson, N.G.2    Kolarich, D.3    Packer, N.H.4
  • 20
    • 0026031334 scopus 로고
    • Differential alpha-fetoprotein lectin binding in hepatocellular carcinoma. Diagnostic utility at low serum levels
    • Du, M. Q.; Hutchinson, W. L.; Johnson, P. J.; Williams, R. Differential alpha-fetoprotein lectin binding in hepatocellular carcinoma. Diagnostic utility at low serum levels Cancer 1991, 67, 476-80
    • (1991) Cancer , vol.67 , pp. 476-480
    • Du, M.Q.1    Hutchinson, W.L.2    Johnson, P.J.3    Williams, R.4
  • 21
    • 0025364993 scopus 로고
    • Lectin-reactive profiles of alpha-fetoprotein characterizing hepatocellular carcinoma and related conditions
    • Taketa, K.; Sekiya, C.; Namiki, M.; Akamatsu, K.; Ohta, Y.; Endo, Y.; Kosaka, K. Lectin-reactive profiles of alpha-fetoprotein characterizing hepatocellular carcinoma and related conditions Gastroenterology 1990, 99, 508-18
    • (1990) Gastroenterology , vol.99 , pp. 508-518
    • Taketa, K.1    Sekiya, C.2    Namiki, M.3    Akamatsu, K.4    Ohta, Y.5    Endo, Y.6    Kosaka, K.7
  • 23
    • 84862238705 scopus 로고    scopus 로고
    • Determination of site-specific glycan heterogeneity on glycoproteins
    • Kolarich, D.; Jensen, P. H.; Altmann, F.; Packer, N. H. Determination of site-specific glycan heterogeneity on glycoproteins Nat. Protoc. 2012, 7, 1285-98
    • (2012) Nat. Protoc. , vol.7 , pp. 1285-1298
    • Kolarich, D.1    Jensen, P.H.2    Altmann, F.3    Packer, N.H.4
  • 25
    • 82455188350 scopus 로고    scopus 로고
    • Application of nano-LC-based glycomics towards biomarker discovery
    • Hua, S.; Lebrilla, C.; An, H. J. Application of nano-LC-based glycomics towards biomarker discovery Bioanalysis 2011, 3, 2573-85
    • (2011) Bioanalysis , vol.3 , pp. 2573-2585
    • Hua, S.1    Lebrilla, C.2    An, H.J.3
  • 26
    • 79954616758 scopus 로고    scopus 로고
    • Ultrasensitive characterization of site-specific glycosylation of affinity-purified haptoglobin from lung cancer patient plasma using 10 mum i.D. Porous layer open tubular liquid chromatography-linear ion trap collision-induced dissociation/electron transfer dissociation mass spectrometry
    • Wang, D.; Hincapie, M.; Rejtar, T.; Karger, B. L. Ultrasensitive characterization of site-specific glycosylation of affinity-purified haptoglobin from lung cancer patient plasma using 10 mum i.d. porous layer open tubular liquid chromatography-linear ion trap collision-induced dissociation/electron transfer dissociation mass spectrometry Anal. Chem. 2011, 83, 2029-37
    • (2011) Anal. Chem. , vol.83 , pp. 2029-2037
    • Wang, D.1    Hincapie, M.2    Rejtar, T.3    Karger, B.L.4
  • 27
    • 0020601062 scopus 로고
    • Purification and characterization of a cell-aggregating factor (clusterin), the major glycoprotein in ram rete testis fluid
    • Blaschuk, O.; Burdzy, K.; Fritz, I. B. Purification and characterization of a cell-aggregating factor (clusterin), the major glycoprotein in ram rete testis fluid J. Biol. Chem. 1983, 258, 7714-20
    • (1983) J. Biol. Chem. , vol.258 , pp. 7714-7720
    • Blaschuk, O.1    Burdzy, K.2    Fritz, I.B.3
  • 29
    • 0036223636 scopus 로고    scopus 로고
    • Introducing the clusterin gene into human renal cell carcinoma cells enhances their metastatic potential
    • Miyake, H.; Gleave, M. E.; Arakawa, S.; Kamidono, S.; Hara, I. Introducing the clusterin gene into human renal cell carcinoma cells enhances their metastatic potential J. Urol. 2002, 167, 2203-8
    • (2002) J. Urol. , vol.167 , pp. 2203-2208
    • Miyake, H.1    Gleave, M.E.2    Arakawa, S.3    Kamidono, S.4    Hara, I.5
  • 34
    • 25844444617 scopus 로고    scopus 로고
    • Expression of the secreted form of clusterin protein in renal cell carcinoma as a predictor of disease extension
    • Kurahashi, T.; Muramaki, M.; Yamanaka, K.; Hara, I.; Miyake, H. Expression of the secreted form of clusterin protein in renal cell carcinoma as a predictor of disease extension BJU Int. 2005, 96, 895-9
    • (2005) BJU Int. , vol.96 , pp. 895-899
    • Kurahashi, T.1    Muramaki, M.2    Yamanaka, K.3    Hara, I.4    Miyake, H.5
  • 35
    • 84865368439 scopus 로고    scopus 로고
    • Multidimensional liquid chromatography platform for profiling alterations of clusterin N-glycosylation in the plasma of patients with renal cell carcinoma
    • Tousi, F.; Bones, J.; Iliopoulos, O.; Hancock, W. S.; Hincapie, M. Multidimensional liquid chromatography platform for profiling alterations of clusterin N-glycosylation in the plasma of patients with renal cell carcinoma J. Chromatogr. A 2012, 1256, 121-8
    • (2012) J. Chromatogr. A , vol.1256 , pp. 121-128
    • Tousi, F.1    Bones, J.2    Iliopoulos, O.3    Hancock, W.S.4    Hincapie, M.5
  • 36
    • 84869475601 scopus 로고    scopus 로고
    • The GlycanBuilder and GlycoWorkbench glycoinformatics tools: Updates and new developments
    • Damerell, D.; Ceroni, A.; Maass, K.; Ranzinger, R.; Dell, A.; Haslam, S. M. The GlycanBuilder and GlycoWorkbench glycoinformatics tools: updates and new developments Biol. Chem. 2012, 393, 1357-62
    • (2012) Biol. Chem. , vol.393 , pp. 1357-1362
    • Damerell, D.1    Ceroni, A.2    Maass, K.3    Ranzinger, R.4    Dell, A.5    Haslam, S.M.6
  • 37
    • 0026600180 scopus 로고
    • Clusterin: The intriguing guises of a widely expressed glycoprotein
    • Jenne, D. E.; Tschopp, J. Clusterin: the intriguing guises of a widely expressed glycoprotein Trends Biochem. Sci. 1992, 17, 154-9
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 154-159
    • Jenne, D.E.1    Tschopp, J.2
  • 41
    • 61849164561 scopus 로고    scopus 로고
    • Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry
    • Chen, R.; Jiang, X.; Sun, D.; Han, G.; Wang, F.; Ye, M.; Wang, L.; Zou, H. Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry J. Proteome Res. 2009, 8, 651-61
    • (2009) J. Proteome Res. , vol.8 , pp. 651-661
    • Chen, R.1    Jiang, X.2    Sun, D.3    Han, G.4    Wang, F.5    Ye, M.6    Wang, L.7    Zou, H.8
  • 42
    • 0027586797 scopus 로고
    • Collisional fragmentation of glycopeptides by electrospray ionization LC/MS and LC/MS/MS: Methods for selective detection of glycopeptides in protein digests
    • Huddleston, M. J.; Bean, M. F.; Carr, S. A. Collisional fragmentation of glycopeptides by electrospray ionization LC/MS and LC/MS/MS: methods for selective detection of glycopeptides in protein digests Anal. Chem. 1993, 65, 877-84
    • (1993) Anal. Chem. , vol.65 , pp. 877-884
    • Huddleston, M.J.1    Bean, M.F.2    Carr, S.A.3
  • 43
    • 2642563583 scopus 로고    scopus 로고
    • Selective detection of glycopeptides on ion trap mass spectrometers
    • Sullivan, B.; Addona, T. A.; Carr, S. A. Selective detection of glycopeptides on ion trap mass spectrometers Anal. Chem. 2004, 76, 3112-8
    • (2004) Anal. Chem. , vol.76 , pp. 3112-3118
    • Sullivan, B.1    Addona, T.A.2    Carr, S.A.3
  • 44
    • 0035261661 scopus 로고    scopus 로고
    • GlycoMod-a software tool for determining glycosylation compositions from mass spectrometric data
    • Cooper, C. A.; Gasteiger, E.; Packer, N. H. GlycoMod-a software tool for determining glycosylation compositions from mass spectrometric data Proteomics 2001, 1, 340-9
    • (2001) Proteomics , vol.1 , pp. 340-349
    • Cooper, C.A.1    Gasteiger, E.2    Packer, N.H.3
  • 45
    • 0001270151 scopus 로고
    • The determination of glycopeptides by liquid chromatography/mass spectrometry with collision-induced dissociation
    • Conboy, J. J.; Henion, J. D. The determination of glycopeptides by liquid chromatography/mass spectrometry with collision-induced dissociation J. Am. Soc. Mass Spectrom. 1992, 3, 804-14
    • (1992) J. Am. Soc. Mass Spectrom. , vol.3 , pp. 804-814
    • Conboy, J.J.1    Henion, J.D.2
  • 46
    • 0029134303 scopus 로고
    • Evaluation of glycosylation site heterogeneity and selective identification of glycopeptides in proteolytic digests of bovine alpha 1-acid glycoprotein by mass spectrometry
    • Hunter, A. P.; Games, D. E. Evaluation of glycosylation site heterogeneity and selective identification of glycopeptides in proteolytic digests of bovine alpha 1-acid glycoprotein by mass spectrometry Rapid Commun. Mass Spectrom. 1995, 9, 42-56
    • (1995) Rapid Commun. Mass Spectrom. , vol.9 , pp. 42-56
    • Hunter, A.P.1    Games, D.E.2
  • 47
    • 0027964412 scopus 로고
    • Clusterin: Modulation of complement function
    • Tschopp, J.; French, L. E. Clusterin: modulation of complement function Clin. Exp. Immunol. 1994, 97, 11-4
    • (1994) Clin. Exp. Immunol. , vol.97 , pp. 11-14
    • Tschopp, J.1    French, L.E.2
  • 50
    • 0027490902 scopus 로고
    • Glycoprotein III (clusterin, sulfated glycoprotein 2) in endocrine, nervous, and other tissues: Immunochemical characterization, subcellular localization, and regulation of biosynthesis
    • Laslop, A.; Steiner, H. J.; Egger, C.; Wolkersdorfer, M.; Kapelari, S.; Hogue-Angeletti, R.; Erickson, J. D.; Fischer-Colbrie, R.; Winkler, H. Glycoprotein III (clusterin, sulfated glycoprotein 2) in endocrine, nervous, and other tissues: immunochemical characterization, subcellular localization, and regulation of biosynthesis J. Neurochem. 1993, 61, 1498-505
    • (1993) J. Neurochem. , vol.61 , pp. 1498-1505
    • Laslop, A.1    Steiner, H.J.2    Egger, C.3    Wolkersdorfer, M.4    Kapelari, S.5    Hogue-Angeletti, R.6    Erickson, J.D.7    Fischer-Colbrie, R.8    Winkler, H.9
  • 51
    • 0036829661 scopus 로고    scopus 로고
    • Clusterin/apolipoprotein J in human aging and cancer
    • Trougakos, I. P.; Gonos, E. S. Clusterin/apolipoprotein J in human aging and cancer Int. J. Biochem. Cell Biol. 2002, 34, 1430-48
    • (2002) Int. J. Biochem. Cell Biol. , vol.34 , pp. 1430-1448
    • Trougakos, I.P.1    Gonos, E.S.2
  • 55
    • 84876229155 scopus 로고    scopus 로고
    • Tandem mass spectra of glycan structures enable the multistage mass spectrometric identification of determinants on oligosaccharides
    • Everest-Dass, A. V.; Kolarich, D.; Campbell, M. P.; Packer, N. H. Tandem mass spectra of glycan structures enable the multistage mass spectrometric identification of determinants on oligosaccharides Rapid Commin. Mass Spectrom. 2013, 27, 931-9
    • (2013) Rapid Commin. Mass Spectrom. , vol.27 , pp. 931-939
    • Everest-Dass, A.V.1    Kolarich, D.2    Campbell, M.P.3    Packer, N.H.4
  • 57
    • 0018778002 scopus 로고
    • Partial structure of a membrane glycopeptide from virus-transformed hamster cells
    • Santer, U. V.; Glick, M. C. Partial structure of a membrane glycopeptide from virus-transformed hamster cells Biochemistry 1979, 18, 2533-40
    • (1979) Biochemistry , vol.18 , pp. 2533-2540
    • Santer, U.V.1    Glick, M.C.2
  • 63
    • 33748809567 scopus 로고    scopus 로고
    • Screening of glycosylation patterns in serum using natural glycoprotein microarrays and multi-lectin fluorescence detection
    • Patwa, T. H.; Zhao, J.; Anderson, M. A.; Simeone, D. M.; Lubman, D. M. Screening of glycosylation patterns in serum using natural glycoprotein microarrays and multi-lectin fluorescence detection Anal. Chem. 2006, 78, 6411-21
    • (2006) Anal. Chem. , vol.78 , pp. 6411-6421
    • Patwa, T.H.1    Zhao, J.2    Anderson, M.A.3    Simeone, D.M.4    Lubman, D.M.5
  • 65
    • 34249341648 scopus 로고    scopus 로고
    • Glycoprotein microarrays with multi-lectin detection: Unique lectin binding patterns as a tool for classifying normal, chronic pancreatitis and pancreatic cancer sera
    • Zhao, J.; Patwa, T. H.; Qiu, W.; Shedden, K.; Hinderer, R.; Misek, D. E.; Anderson, M. A.; Simeone, D. M.; Lubman, D. M. Glycoprotein microarrays with multi-lectin detection: unique lectin binding patterns as a tool for classifying normal, chronic pancreatitis and pancreatic cancer sera J. Proteome Res. 2007, 6, 1864-74
    • (2007) J. Proteome Res. , vol.6 , pp. 1864-1874
    • Zhao, J.1    Patwa, T.H.2    Qiu, W.3    Shedden, K.4    Hinderer, R.5    Misek, D.E.6    Anderson, M.A.7    Simeone, D.M.8    Lubman, D.M.9


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