메뉴 건너뛰기




Volumn 24, Issue 11, 2015, Pages 2820-2837

Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance

Author keywords

adaptation; environmental variation; mitochondria; mitonuclear; oxidative phosphorylation system; selection

Indexed keywords

AVES; EOPSALTRIA AUSTRALIS; EOPSALTRIA GRISEOGULARIS;

EID: 84930082783     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.13203     Document Type: Article
Times cited : (112)

References (115)
  • 1
    • 0034897709 scopus 로고    scopus 로고
    • Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
    • Anisimova M, Bielawski JP, Yang Z, (2001) Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Molecular Biology and Evolution, 18, 1585-1592.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1585-1592
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 2
    • 78650007030 scopus 로고    scopus 로고
    • Genetic architecture of metabolic rate: environment specific epistasis between mitochondrial and nuclear genes in an insect
    • Arnqvist G, Dowling DK, Eady P, et al,. (2010) Genetic architecture of metabolic rate: environment specific epistasis between mitochondrial and nuclear genes in an insect. Evolution, 64, 3354-3363.
    • (2010) Evolution , vol.64 , pp. 3354-3363
    • Arnqvist, G.1    Dowling, D.K.2    Eady, P.3
  • 3
    • 84902313999 scopus 로고    scopus 로고
    • Adaptive synonymous mutations in an experimentally evolved Pseudomonas fluorescens population
    • Bailey SF, Hinz A, Kassen R, (2014) Adaptive synonymous mutations in an experimentally evolved Pseudomonas fluorescens population. Nature Communications, 5, 4076.
    • (2014) Nature Communications , vol.5 , pp. 4076
    • Bailey, S.F.1    Hinz, A.2    Kassen, R.3
  • 4
    • 34347326060 scopus 로고    scopus 로고
    • Mitochondrial DNA variation is associated with measurable differences in life-history traits and mitochondrial metabolism in Drosophila simulans
    • Ballard JWO, Melvin RG, Katewa SD, Maas K, (2007) Mitochondrial DNA variation is associated with measurable differences in life-history traits and mitochondrial metabolism in Drosophila simulans. Evolution, 61, 1735-1747.
    • (2007) Evolution , vol.61 , pp. 1735-1747
    • Ballard, J.W.O.1    Melvin, R.G.2    Katewa, S.D.3    Maas, K.4
  • 6
    • 84933498486 scopus 로고
    • Heredity and variation in modern lights
    • (ed. Seward A.C.), Cambridge University Press, Cambridge
    • Bateson W, (1909) Heredity and variation in modern lights. In: Darwin and Modern Science (ed., Seward AC,), pp. 85-101. Cambridge University Press, Cambridge
    • (1909) Darwin and Modern Science , pp. 85-101
    • Bateson, W.1
  • 7
    • 67149146192 scopus 로고    scopus 로고
    • Evolutionary pressure on mitochondrial cytochrome b is consistent with a role of CytbI7T affecting longevity during caloric restriction
    • Beckstead WA, Ebbert MT, Rowe MJ, McClellan DA, (2009) Evolutionary pressure on mitochondrial cytochrome b is consistent with a role of CytbI7T affecting longevity during caloric restriction. PLoS One, 4, e5836.
    • (2009) PLoS One , vol.4
    • Beckstead, W.A.1    Ebbert, M.T.2    Rowe, M.J.3    McClellan, D.A.4
  • 9
    • 79955577378 scopus 로고    scopus 로고
    • The coupling hypothesis: why genome scans may fail to map local adaptation genes
    • Bierne N, Welch J, Loire E, Bonhomme F, David P, (2011) The coupling hypothesis: why genome scans may fail to map local adaptation genes. Molecular Ecology, 20, 2044-2072.
    • (2011) Molecular Ecology , vol.20 , pp. 2044-2072
    • Bierne, N.1    Welch, J.2    Loire, E.3    Bonhomme, F.4    David, P.5
  • 10
    • 84867580162 scopus 로고    scopus 로고
    • A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities?
    • Burton RS, Barreto FS, (2012) A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities? Molecular Ecology, 21, 4942-4957.
    • (2012) Molecular Ecology , vol.21 , pp. 4942-4957
    • Burton, R.S.1    Barreto, F.S.2
  • 12
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17, 540-552.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 540-552
    • Castresana, J.1
  • 13
    • 84910657559 scopus 로고    scopus 로고
    • Integrating evolutionary and functional tests of adaptive hypotheses: a case study of altitudinal differentiation in hemoglobin function in an Andean sparrow, Zonotrichia capensis
    • Cheviron ZA, Natarajan C, Projecto-Garcia J, et al,. (2014) Integrating evolutionary and functional tests of adaptive hypotheses: a case study of altitudinal differentiation in hemoglobin function in an Andean sparrow, Zonotrichia capensis. Molecular Biology and Evolution, 31, 2948-2962.
    • (2014) Molecular Biology and Evolution , vol.31 , pp. 2948-2962
    • Cheviron, Z.A.1    Natarajan, C.2    Projecto-Garcia, J.3
  • 15
    • 84867301515 scopus 로고    scopus 로고
    • Predicting the functional effect of amino acid substitutions and indels
    • Choi Y, Sims GE, Murphy S, Miller JR, Chan AP, (2012) Predicting the functional effect of amino acid substitutions and indels. PLoS One, 7, e46688.
    • (2012) PLoS One , vol.7
    • Choi, Y.1    Sims, G.E.2    Murphy, S.3    Miller, J.R.4    Chan, A.P.5
  • 16
    • 77951726798 scopus 로고    scopus 로고
    • Speciation through cytonuclear incompatibility: insights from yeast and implications for higher eukaryotes
    • Chou JY, Leu JY, (2010) Speciation through cytonuclear incompatibility: insights from yeast and implications for higher eukaryotes. BioEssays, 32, 401-411.
    • (2010) BioEssays , vol.32 , pp. 401-411
    • Chou, J.Y.1    Leu, J.Y.2
  • 17
    • 80055110784 scopus 로고    scopus 로고
    • Mitochondrial and nuclear DNA phylogenies reveal a complex evolutionary history in the Australasian robins (Passeriformes: Petroicidae)
    • Christidis L, Irestedt M, Rowe D, Boles WE, Norman JA, (2011) Mitochondrial and nuclear DNA phylogenies reveal a complex evolutionary history in the Australasian robins (Passeriformes: Petroicidae). Molecular Phylogenetics and Evolution, 61, 726-738.
    • (2011) Molecular Phylogenetics and Evolution , vol.61 , pp. 726-738
    • Christidis, L.1    Irestedt, M.2    Rowe, D.3    Boles, W.E.4    Norman, J.A.5
  • 18
    • 84870524101 scopus 로고    scopus 로고
    • Rapid characterization of mitochondrial genome rearrangements in Australian songbirds using next-generation sequencing technology
    • Cooke GM, King AG, Johnson RN, Boles WE, Major RE, (2012) Rapid characterization of mitochondrial genome rearrangements in Australian songbirds using next-generation sequencing technology. Journal of Heredity, 103, 882-886.
    • (2012) Journal of Heredity , vol.103 , pp. 882-886
    • Cooke, G.M.1    King, A.G.2    Johnson, R.N.3    Boles, W.E.4    Major, R.E.5
  • 19
    • 33748947179 scopus 로고    scopus 로고
    • The role of mitochondrial respiration in physiological and evolutionary adaptation
    • Das J, (2006) The role of mitochondrial respiration in physiological and evolutionary adaptation. BioEssays, 28, 890-901.
    • (2006) BioEssays , vol.28 , pp. 890-901
    • Das, J.1
  • 20
    • 77957233168 scopus 로고    scopus 로고
    • Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
    • Delport W, Poon AF, Frost SD, Pond SLK, (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics, 26, 2455-2457.
    • (2010) Bioinformatics , vol.26 , pp. 2455-2457
    • Delport, W.1    Poon, A.F.2    Frost, S.D.3    Pond, S.L.K.4
  • 21
    • 0001232092 scopus 로고
    • Studies on hybrid sterility. II. Localization of sterility factors in Drosophila pseudoobscura hybrids
    • Dobzhansky T, (1936) Studies on hybrid sterility. II. Localization of sterility factors in Drosophila pseudoobscura hybrids. Genetics, 21, 113.
    • (1936) Genetics , vol.21 , pp. 113
    • Dobzhansky, T.1
  • 22
    • 84859855727 scopus 로고    scopus 로고
    • A species assemblage approach to comparative phylogeography of birds in southern Australia
    • Dolman G, Joseph L, (2012) A species assemblage approach to comparative phylogeography of birds in southern Australia. Ecology and Evolution, 2, 354-369.
    • (2012) Ecology and Evolution , vol.2 , pp. 354-369
    • Dolman, G.1    Joseph, L.2
  • 23
    • 84923072124 scopus 로고    scopus 로고
    • Evolutionary history of birds across southern Australia: structure, history and taxonomic implications of mitochondrial DNA diversity in an ecologically diverse suite of species
    • Dolman G, Joseph L, (2015) Evolutionary history of birds across southern Australia: structure, history and taxonomic implications of mitochondrial DNA diversity in an ecologically diverse suite of species. Emu, 115, 35-48.
    • (2015) Emu , vol.115 , pp. 35-48
    • Dolman, G.1    Joseph, L.2
  • 24
    • 33846479810 scopus 로고    scopus 로고
    • Intergenomic epistasis for fitness: within-population interactions between cytoplasmic and nuclear genes in Drosophila melanogaster
    • Dowling DK, Friberg U, Hailer F, Arnqvist G, (2007) Intergenomic epistasis for fitness: within-population interactions between cytoplasmic and nuclear genes in Drosophila melanogaster. Genetics, 175, 235-244.
    • (2007) Genetics , vol.175 , pp. 235-244
    • Dowling, D.K.1    Friberg, U.2    Hailer, F.3    Arnqvist, G.4
  • 25
    • 51449123384 scopus 로고    scopus 로고
    • Evolutionary implications of non-neutral mitochondrial genetic variation
    • Dowling DK, Friberg U, Lindell J, (2008) Evolutionary implications of non-neutral mitochondrial genetic variation. Trends in Ecology and Evolution, 23, 546-554.
    • (2008) Trends in Ecology and Evolution , vol.23 , pp. 546-554
    • Dowling, D.K.1    Friberg, U.2    Lindell, J.3
  • 27
    • 80052068980 scopus 로고    scopus 로고
    • Structure of the membrane domain of respiratory complex I
    • Efremov RG, Sazanov LA, (2011) Structure of the membrane domain of respiratory complex I. Nature, 476, 414-420.
    • (2011) Nature , vol.476 , pp. 414-420
    • Efremov, R.G.1    Sazanov, L.A.2
  • 28
    • 40749097777 scopus 로고    scopus 로고
    • Genetic basis of fitness differences in natural populations
    • Ellegren H, Sheldon BC, (2008) Genetic basis of fitness differences in natural populations. Nature, 452, 169-175.
    • (2008) Nature , vol.452 , pp. 169-175
    • Ellegren, H.1    Sheldon, B.C.2
  • 30
    • 13444305420 scopus 로고    scopus 로고
    • Nonshivering thermogenesis capacity associated to mitochondrial DNA haplotypes and gender in the greater white-toothed shrew, Crocidura russula
    • Fontanillas P, Depraz A, Giorgi MS, Perrin N, (2005) Nonshivering thermogenesis capacity associated to mitochondrial DNA haplotypes and gender in the greater white-toothed shrew, Crocidura russula. Molecular Ecology, 14, 661-670.
    • (2005) Molecular Ecology , vol.14 , pp. 661-670
    • Fontanillas, P.1    Depraz, A.2    Giorgi, M.S.3    Perrin, N.4
  • 31
    • 79551484061 scopus 로고    scopus 로고
    • Positive selection on the killer whale mitogenome
    • Foote AD, Morin PA, Durban JW, et al,. (2011) Positive selection on the killer whale mitogenome. Biology Letters, 7, 116-118.
    • (2011) Biology Letters , vol.7 , pp. 116-118
    • Foote, A.D.1    Morin, P.A.2    Durban, J.W.3
  • 32
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu Y-X, (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.-X.1
  • 33
    • 84865156005 scopus 로고    scopus 로고
    • Comparative genomics reveals adaptive protein evolution and a possible cytonuclear incompatibility between European and American Eels
    • Gagnaire P-A, Normandeau E, Bernatchez L, (2012) Comparative genomics reveals adaptive protein evolution and a possible cytonuclear incompatibility between European and American Eels. Molecular Biology and Evolution, 29, 2909-2919.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 2909-2919
    • Gagnaire, P.-A.1    Normandeau, E.2    Bernatchez, L.3
  • 34
    • 70350771134 scopus 로고    scopus 로고
    • Mitochondrial DNA as a marker of molecular diversity: a reappraisal
    • Galtier N, Nabholz B, Glemin S, Hurst GDD, (2009) Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Molecular Ecology, 18, 4541-4550.
    • (2009) Molecular Ecology , vol.18 , pp. 4541-4550
    • Galtier, N.1    Nabholz, B.2    Glemin, S.3    Hurst, G.D.D.4
  • 35
    • 80053239735 scopus 로고    scopus 로고
    • Positive Darwinian selection in the piston that powers proton pumps in complex I of the mitochondria of Pacific salmon
    • Garvin MR, Bielawski JP, Gharrett AJ, (2011) Positive Darwinian selection in the piston that powers proton pumps in complex I of the mitochondria of Pacific salmon. PLoS One, 6, e24127.
    • (2011) PLoS One , vol.6
    • Garvin, M.R.1    Bielawski, J.P.2    Gharrett, A.J.3
  • 37
    • 60649104806 scopus 로고    scopus 로고
    • Molecular evolution of cytochrome b in high- and low-altitude deer mice (genus Peromyscus)
    • Gering EJ, Opazo JC, Storz JF, (2008) Molecular evolution of cytochrome b in high- and low-altitude deer mice (genus Peromyscus). Heredity, 102, 226-235.
    • (2008) Heredity , vol.102 , pp. 226-235
    • Gering, E.J.1    Opazo, J.C.2    Storz, J.F.3
  • 38
    • 77955364142 scopus 로고    scopus 로고
    • Unmasking the causes of multifactorial disorders: OXPHOS differences between mitochondrial haplogroups
    • Gõmez-Durán A, Pacheu-Grau D, Lõpez-Gallardo E, et al,. (2010) Unmasking the causes of multifactorial disorders: OXPHOS differences between mitochondrial haplogroups. Human Molecular Genetics, 19, 3343-3353.
    • (2010) Human Molecular Genetics , vol.19 , pp. 3343-3353
    • Gõmez-Durán, A.1    Pacheu-Grau, D.2    Lõpez-Gallardo, E.3
  • 39
    • 77955379360 scopus 로고
    • Sex ratio and unisexual sterility in hybrid animals
    • Haldane JB, (1922) Sex ratio and unisexual sterility in hybrid animals. Journal of Genetics, 12, 101-109.
    • (1922) Journal of Genetics , vol.12 , pp. 101-109
    • Haldane, J.B.1
  • 40
    • 84862121975 scopus 로고    scopus 로고
    • Fine-scale effects of habitat loss and fragmentation despite large-scale gene flow for some regionally declining woodland bird species
    • Harrisson KA, Pavlova A, Amos JN, et al,. (2012) Fine-scale effects of habitat loss and fragmentation despite large-scale gene flow for some regionally declining woodland bird species. Landscape Ecology, 27, 813-827.
    • (2012) Landscape Ecology , vol.27 , pp. 813-827
    • Harrisson, K.A.1    Pavlova, A.2    Amos, J.N.3
  • 41
    • 0037150708 scopus 로고    scopus 로고
    • Climate warming and disease risks for terrestrial and marine biota
    • Harvell CD, Mitchell CE, Ward JR, et al,. (2002) Climate warming and disease risks for terrestrial and marine biota. Science, 296, 2158-2162.
    • (2002) Science , vol.296 , pp. 2158-2162
    • Harvell, C.D.1    Mitchell, C.E.2    Ward, J.R.3
  • 42
    • 84887096294 scopus 로고    scopus 로고
    • Pleiotropic effects of a mitochondrial-nuclear incompatibility depend upon the accelerating effect of temperature in Drosophila
    • Hoekstra LA, Siddiq MA, Montooth KL, (2013) Pleiotropic effects of a mitochondrial-nuclear incompatibility depend upon the accelerating effect of temperature in Drosophila. Genetics, 195, 1129-1139.
    • (2013) Genetics , vol.195 , pp. 1129-1139
    • Hoekstra, L.A.1    Siddiq, M.A.2    Montooth, K.L.3
  • 43
    • 20444373261 scopus 로고    scopus 로고
    • Evidence for a robust sex-specific trade-off between cold resistance and starvation resistance in Drosophila melanogaster
    • Hoffmann AA, Hallas R, Anderson AR, Telonis-Scott M, (2005) Evidence for a robust sex-specific trade-off between cold resistance and starvation resistance in Drosophila melanogaster. Journal of Evolutionary Biology, 18, 804-810.
    • (2005) Journal of Evolutionary Biology , vol.18 , pp. 804-810
    • Hoffmann, A.A.1    Hallas, R.2    Anderson, A.R.3    Telonis-Scott, M.4
  • 44
    • 84902544205 scopus 로고    scopus 로고
    • Distinguishing the effects of selection from demographic history in the genetic variation of two sister passerines based on mitochondrial-nuclear comparison
    • Hung C, Zink R, (2014) Distinguishing the effects of selection from demographic history in the genetic variation of two sister passerines based on mitochondrial-nuclear comparison. Heredity, 113, 42-51.
    • (2014) Heredity , vol.113 , pp. 42-51
    • Hung, C.1    Zink, R.2
  • 45
    • 0032479524 scopus 로고    scopus 로고
    • Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex
    • Iwata S, Lee JW, Okada K, et al,. (1998) Complete structure of the 11-subunit bovine mitochondrial cytochrome bc1 complex. Science, 281, 64-71.
    • (1998) Science , vol.281 , pp. 64-71
    • Iwata, S.1    Lee, J.W.2    Okada, K.3
  • 46
    • 58149191272 scopus 로고    scopus 로고
    • tRNAdb 2009: compilation of tRNA sequences and tRNA genes
    • Jühling F, Mörl M, Hartmann RK, et al,. (2009) tRNAdb 2009: compilation of tRNA sequences and tRNA genes. Nucleic Acids Research, 37, D159-D162.
    • (2009) Nucleic Acids Research , vol.37 , pp. D159-D162
    • Jühling, F.1    Mörl, M.2    Hartmann, R.K.3
  • 47
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Ki Kuma, Miyata T, (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059-3066.
    • (2002) Nucleic Acids Research , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Ki, K.3    Miyata, T.4
  • 48
    • 9944247694 scopus 로고    scopus 로고
    • Conceptual issues in local adaptation
    • Kawecki TJ, Ebert D, (2004) Conceptual issues in local adaptation. Ecology Letters, 7, 1225-1241.
    • (2004) Ecology Letters , vol.7 , pp. 1225-1241
    • Kawecki, T.J.1    Ebert, D.2
  • 49
    • 84855843936 scopus 로고    scopus 로고
    • Temperature stress increases hybrid incompatibilities in the parasitic wasp genus Nasonia
    • Koevoets T, Van de Zande L, Beukeboom L, (2012) Temperature stress increases hybrid incompatibilities in the parasitic wasp genus Nasonia. Journal of Evolutionary Biology, 25, 304-316.
    • (2012) Journal of Evolutionary Biology , vol.25 , pp. 304-316
    • Koevoets, T.1    Van De Zande, L.2    Beukeboom, L.3
  • 50
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
    • Krogh A, Larsson B, Von Heijne G, Sonnhammer EL, (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. Journal of Molecular Biology, 305, 567-580.
    • (2001) Journal of Molecular Biology , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.4
  • 51
    • 84861380450 scopus 로고    scopus 로고
    • PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses
    • Lanfear R, Calcott B, Ho SY, Guindon S, (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution, 29, 1695-1701.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 1695-1701
    • Lanfear, R.1    Calcott, B.2    Ho, S.Y.3    Guindon, S.4
  • 52
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li H, Handsaker B, Wysoker A, et al,. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 53
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 54
    • 0034611678 scopus 로고    scopus 로고
    • Towards a molecular understanding of adaptive thermogenesis
    • Lowell BB, Spiegelman BM, (2000) Towards a molecular understanding of adaptive thermogenesis. Nature, 404, 652-660.
    • (2000) Nature , vol.404 , pp. 652-660
    • Lowell, B.B.1    Spiegelman, B.M.2
  • 55
    • 67949103531 scopus 로고    scopus 로고
    • Multi-locus phylogeny clarifies the systematics of the Australo-Papuan robins (Family Petroicidae, Passeriformes)
    • Loynes K, Joseph L, Keogh JS, (2009) Multi-locus phylogeny clarifies the systematics of the Australo-Papuan robins (Family Petroicidae, Passeriformes). Molecular Phylogenetics and Evolution, 53, 212-219.
    • (2009) Molecular Phylogenetics and Evolution , vol.53 , pp. 212-219
    • Loynes, K.1    Joseph, L.2    Keogh, J.S.3
  • 56
    • 0030209597 scopus 로고    scopus 로고
    • The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies
    • Lunt D, Zhang DX, Szymura J, Hewltt O, (1996) The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies. Insect Molecular Biology, 5, 153-165.
    • (1996) Insect Molecular Biology , vol.5 , pp. 153-165
    • Lunt, D.1    Zhang, D.X.2    Szymura, J.3    Hewltt, O.4
  • 57
    • 67149090802 scopus 로고    scopus 로고
    • Collapse of an avifauna: climate change appears to exacerbate habitat loss and degradation
    • Mac Nally R, Bennett AF, Thomson JR, et al,. (2009) Collapse of an avifauna: climate change appears to exacerbate habitat loss and degradation. Diversity and Distributions, 15, 720-730.
    • (2009) Diversity and Distributions , vol.15 , pp. 720-730
    • Mac Nally, R.1    Bennett, A.F.2    Thomson, J.R.3
  • 58
    • 0034830861 scopus 로고    scopus 로고
    • Influence of remnant and landscape attributes on Australian woodland bird communities
    • Major RE, Christie FJ, Gowing G, (2001) Influence of remnant and landscape attributes on Australian woodland bird communities. Biological Conservation, 102, 47-66.
    • (2001) Biological Conservation , vol.102 , pp. 47-66
    • Major, R.E.1    Christie, F.J.2    Gowing, G.3
  • 59
    • 84888637186 scopus 로고    scopus 로고
    • Nature's inordinate fondness for metabolic enzymes: why metabolic enzyme loci are so frequently targets of selection
    • Marden JH, (2013) Nature's inordinate fondness for metabolic enzymes: why metabolic enzyme loci are so frequently targets of selection. Molecular Ecology, 22, 5743-5764.
    • (2013) Molecular Ecology , vol.22 , pp. 5743-5764
    • Marden, J.H.1
  • 60
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin D, Rybicki E, (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics, 16, 562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 61
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: a flexible and fast computer program for analyzing recombination
    • Martin DP, Lemey P, Lott M, et al,. (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics, 26, 2462-2463.
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1    Lemey, P.2    Lott, M.3
  • 63
    • 0034982702 scopus 로고    scopus 로고
    • Estimating the influence of selection on the variable amino acid sites of the cytochrome b protein functional domains
    • McClellan DA, McCracken KG, (2001) Estimating the influence of selection on the variable amino acid sites of the cytochrome b protein functional domains. Molecular Biology and Evolution, 18, 917-925.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 917-925
    • McClellan, D.A.1    McCracken, K.G.2
  • 64
    • 14544300682 scopus 로고    scopus 로고
    • Physicochemical evolution and molecular adaptation of the cetacean and artiodactyl cytochrome b proteins
    • McClellan D, Palfreyman E, Smith M, et al,. (2005) Physicochemical evolution and molecular adaptation of the cetacean and artiodactyl cytochrome b proteins. Molecular Biology and Evolution, 22, 437-455.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 437-455
    • McClellan, D.1    Palfreyman, E.2    Smith, M.3
  • 65
    • 34249062487 scopus 로고    scopus 로고
    • Positive and negative selection on the mitochondrial genome
    • Meiklejohn CD, Montooth KL, Rand DM, (2007) Positive and negative selection on the mitochondrial genome. Trends in Genetics, 23, 259-263.
    • (2007) Trends in Genetics , vol.23 , pp. 259-263
    • Meiklejohn, C.D.1    Montooth, K.L.2    Rand, D.M.3
  • 66
    • 84873512878 scopus 로고    scopus 로고
    • An incompatibility between a mitochondrial tRNA and its nuclear-encoded tRNA synthetase compromises development and fitness in Drosophila
    • Meiklejohn CD, Holmbeck MA, Siddiq MA, et al,. (2013) An incompatibility between a mitochondrial tRNA and its nuclear-encoded tRNA synthetase compromises development and fitness in Drosophila. PLoS Genetics, 9, e1003238.
    • (2013) PLoS Genetics , vol.9
    • Meiklejohn, C.D.1    Holmbeck, M.A.2    Siddiq, M.A.3
  • 67
    • 84901847712 scopus 로고    scopus 로고
    • The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression
    • Melo-Ferreira J, Vilela J, Fonseca MM, et al,. (2014) The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression. Genome Biology and Evolution, 6, 886-896.
    • (2014) Genome Biology and Evolution , vol.6 , pp. 886-896
    • Melo-Ferreira, J.1    Vilela, J.2    Fonseca, M.M.3
  • 68
    • 80054716508 scopus 로고    scopus 로고
    • Structural and functional role of bases 32 and 33 in the anticodon loop of yeast mitochondrial tRNAIle
    • Montanari A, De Luca C, Di Micco P, et al,. (2011) Structural and functional role of bases 32 and 33 in the anticodon loop of yeast mitochondrial tRNAIle. RNA, 17, 1983-1996.
    • (2011) RNA , vol.17 , pp. 1983-1996
    • Montanari, A.1    De Luca, C.2    Di Micco, P.3
  • 69
    • 67650340725 scopus 로고    scopus 로고
    • Comparative genomics of Drosophila mtDNA: novel features of conservation and change across functional domains and lineages
    • Montooth KL, Abt DN, Hofmann JW, Rand DM, (2009) Comparative genomics of Drosophila mtDNA: novel features of conservation and change across functional domains and lineages. Journal of Molecular Evolution, 69, 94-114.
    • (2009) Journal of Molecular Evolution , vol.69 , pp. 94-114
    • Montooth, K.L.1    Abt, D.N.2    Hofmann, J.W.3    Rand, D.M.4
  • 70
    • 0002101476 scopus 로고
    • Isolating mechanisms, evolution and temperature
    • Muller H, (1942) Isolating mechanisms, evolution and temperature. Biological Symposium, 6, 71-125.
    • (1942) Biological Symposium , vol.6 , pp. 71-125
    • Muller, H.1
  • 71
    • 84864605220 scopus 로고    scopus 로고
    • Detecting individual sites subject to episodic diversifying selection
    • Murrell B, Wertheim JO, Moola S, et al,. (2012) Detecting individual sites subject to episodic diversifying selection. PLoS Genetics, 8, e1002764.
    • (2012) PLoS Genetics , vol.8
    • Murrell, B.1    Wertheim, J.O.2    Moola, S.3
  • 72
    • 84876522258 scopus 로고    scopus 로고
    • FUBAR: a fast, unconstrained bayesian approximation for inferring selection
    • Murrell B, Moola S, Mabona A, et al,. (2013) FUBAR: a fast, unconstrained bayesian approximation for inferring selection. Molecular Biology and Evolution, 30, 1196-1205.
    • (2013) Molecular Biology and Evolution , vol.30 , pp. 1196-1205
    • Murrell, B.1    Moola, S.2    Mabona, A.3
  • 73
    • 0004275709 scopus 로고
    • Columbia University Press, Columbia, New York
    • Nei M, (1987) Molecular Evolutionary Genetics. Columbia University Press, Columbia, New York.
    • (1987) Molecular Evolutionary Genetics
    • Nei, M.1
  • 74
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T, (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution, 3, 418-426.
    • (1986) Molecular Biology and Evolution , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 75
    • 84862903304 scopus 로고    scopus 로고
    • Mitochondrial-nuclear interactions and accelerated compensatory evolution: evidence from the primate cytochrome c oxidase complex
    • Osada N, Akashi H, (2012) Mitochondrial-nuclear interactions and accelerated compensatory evolution: evidence from the primate cytochrome c oxidase complex. Molecular Biology and Evolution, 29, 337-346.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 337-346
    • Osada, N.1    Akashi, H.2
  • 76
    • 51749093550 scopus 로고    scopus 로고
    • Comparative analysis of mitochondrial genomes in Bombina (Anura; Bombinatoridae)
    • Pabijan M, Spolsky C, Uzzell T, Szymura JM, (2008) Comparative analysis of mitochondrial genomes in Bombina (Anura; Bombinatoridae). Journal of Molecular Biology, 67, 246-256.
    • (2008) Journal of Molecular Biology , vol.67 , pp. 246-256
    • Pabijan, M.1    Spolsky, C.2    Uzzell, T.3    Szymura, J.M.4
  • 77
    • 84888834488 scopus 로고    scopus 로고
    • Perched at the mito-nuclear crossroads: divergent mitochondrial lineages correlate with environment in the face of ongoing nuclear gene flow in an Australian bird
    • Pavlova A, Amos JN, Joseph L, et al,. (2013) Perched at the mito-nuclear crossroads: divergent mitochondrial lineages correlate with environment in the face of ongoing nuclear gene flow in an Australian bird. Evolution, 67, 3412-3428.
    • (2013) Evolution , vol.67 , pp. 3412-3428
    • Pavlova, A.1    Amos, J.N.2    Joseph, L.3
  • 79
    • 84887020874 scopus 로고    scopus 로고
    • Diet influences the intake target and mitochondrial functions of Drosophila melanogaster males
    • Pichaud N, Messmer M, Correa CC, Ballard JWO, (2013b) Diet influences the intake target and mitochondrial functions of Drosophila melanogaster males. Mitochondrion, 13, 817-822.
    • (2013) Mitochondrion , vol.13 , pp. 817-822
    • Pichaud, N.1    Messmer, M.2    Correa, C.C.3    Ballard, J.W.O.4
  • 80
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
    • Pond SLK, Frost SD, (2005) Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics, 21, 2531-2533.
    • (2005) Bioinformatics , vol.21 , pp. 2531-2533
    • Pond, S.L.K.1    Frost, S.D.2
  • 81
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: computer simulations
    • Posada D, Crandall KA, (2001) Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proceedings of the National Academy of Sciences, 98, 13757-13762.
    • (2001) Proceedings of the National Academy of Sciences , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 82
    • 57749192046 scopus 로고    scopus 로고
    • Speciation through evolution of sex-linked genes
    • Qvarnström A, Bailey RI, (2009) Speciation through evolution of sex-linked genes. Heredity, 102, 4-15.
    • (2009) Heredity , vol.102 , pp. 4-15
    • Qvarnström, A.1    Bailey, R.I.2
  • 84
    • 84922973650 scopus 로고    scopus 로고
    • Nutritional composition of the preferred prey of insectivorous birds: popularity reflects quality
    • Razeng E, Watson DM, (2014) Nutritional composition of the preferred prey of insectivorous birds: popularity reflects quality. Journal of Avian Biology, 46, 89-96.
    • (2014) Journal of Avian Biology , vol.46 , pp. 89-96
    • Razeng, E.1    Watson, D.M.2
  • 85
    • 84860595791 scopus 로고    scopus 로고
    • Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
    • Rohland N, Reich D, (2012) Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture. Genome Research, 22, 939-946.
    • (2012) Genome Research , vol.22 , pp. 939-946
    • Rohland, N.1    Reich, D.2
  • 86
    • 0033525924 scopus 로고    scopus 로고
    • Oxidative phosphorylation at the fin de siecle
    • Saraste M, (1999) Oxidative phosphorylation at the fin de siecle. Science, 283, 1488-1493.
    • (1999) Science , vol.283 , pp. 1488-1493
    • Saraste, M.1
  • 87
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Sawyer S, (1989) Statistical tests for detecting gene conversion. Molecular Biology and Evolution, 6, 526-538.
    • (1989) Molecular Biology and Evolution , vol.6 , pp. 526-538
    • Sawyer, S.1
  • 88
    • 78650426170 scopus 로고    scopus 로고
    • Molecular evolution of cytochrome c oxidase underlies high-altitude adaptation in the bar-headed goose
    • Scott GR, Schulte PM, Egginton S, et al,. (2011) Molecular evolution of cytochrome c oxidase underlies high-altitude adaptation in the bar-headed goose. Molecular Biology and Evolution, 28, 351-363.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 351-363
    • Scott, G.R.1    Schulte, P.M.2    Egginton, S.3
  • 91
    • 84901823342 scopus 로고    scopus 로고
    • Signatures of natural selection in the mitochondrial genomes of Tachycineta swallows and their implications for latitudinal patterns of the 'pace of life'
    • Stager M, Cerasale DJ, Dor R, Winkler DW, Cheviron ZA, (2014) Signatures of natural selection in the mitochondrial genomes of Tachycineta swallows and their implications for latitudinal patterns of the 'pace of life'. Gene, 546, 104-111.
    • (2014) Gene , vol.546 , pp. 104-111
    • Stager, M.1    Cerasale, D.J.2    Dor, R.3    Winkler, D.W.4    Cheviron, Z.A.5
  • 92
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis A, (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312-1313.
    • (2014) Bioinformatics , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 93
    • 84879396104 scopus 로고    scopus 로고
    • Avian erythrocytes have functional mitochondria, opening novel perspectives for birds as animal models in the study of ageing
    • Stier A, Bize P, Schull Q, et al,. (2013) Avian erythrocytes have functional mitochondria, opening novel perspectives for birds as animal models in the study of ageing. Frontiers in Zoology, 10, 33.
    • (2013) Frontiers in Zoology , vol.10 , pp. 33
    • Stier, A.1    Bize, P.2    Schull, Q.3
  • 94
    • 0030014298 scopus 로고    scopus 로고
    • The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites
    • Tajima F, (1996) The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites. Genetics, 143, 1457-1465.
    • (1996) Genetics , vol.143 , pp. 1457-1465
    • Tajima, F.1
  • 95
    • 84871378760 scopus 로고    scopus 로고
    • Whole mitochondrial genome scan for population structure and selection in the Atlantic herring
    • Teacher AG, André C, Merilä J, Wheat CW, (2012) Whole mitochondrial genome scan for population structure and selection in the Atlantic herring. BMC Evolutionary Biology, 12, 248.
    • (2012) BMC Evolutionary Biology , vol.12 , pp. 248
    • Teacher, A.G.1    André, C.2    Merilä, J.3    Wheat, C.W.4
  • 98
    • 84864413626 scopus 로고    scopus 로고
    • The biogeography of mitochondrial and nuclear discordance in animals
    • Toews DP, Brelsford A, (2012) The biogeography of mitochondrial and nuclear discordance in animals. Molecular Ecology, 21, 3907-3930.
    • (2012) Molecular Ecology , vol.21 , pp. 3907-3930
    • Toews, D.P.1    Brelsford, A.2
  • 99
    • 84890877335 scopus 로고    scopus 로고
    • Migration, mitochondria, and the yellow-rumped warbler
    • Toews DP, Mandic M, Richards JG, Irwin DE, (2014) Migration, mitochondria, and the yellow-rumped warbler. Evolution, 68, 241-255.
    • (2014) Evolution , vol.68 , pp. 241-255
    • Toews, D.P.1    Mandic, M.2    Richards, J.G.3    Irwin, D.E.4
  • 100
    • 79960616388 scopus 로고    scopus 로고
    • The evolution of mitochondrial genomes in subterranean caviomorph rodents: adaptation against a background of purifying selection
    • Tomasco IH, Lessa EP, (2011) The evolution of mitochondrial genomes in subterranean caviomorph rodents: adaptation against a background of purifying selection. Molecular Phylogenetics and Evolution, 61, 64-70.
    • (2011) Molecular Phylogenetics and Evolution , vol.61 , pp. 64-70
    • Tomasco, I.H.1    Lessa, E.P.2
  • 101
    • 84893807839 scopus 로고    scopus 로고
    • Evidence for Mito-nuclear and sex-linked reproductive barriers between the hybrid Italian sparrow and its parent species
    • Trier CN, Hermansen JS, Sætre G-P, Bailey RI, (2014) Evidence for Mito-nuclear and sex-linked reproductive barriers between the hybrid Italian sparrow and its parent species. PLoS Genetics, 10, e1004075.
    • (2014) PLoS Genetics , vol.10
    • Trier, C.N.1    Hermansen, J.S.2    Sætre, G.-P.3    Bailey, R.I.4
  • 102
    • 0029942862 scopus 로고    scopus 로고
    • The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å
    • Tsukihara T, Aoyama H, Yamashita E, et al,. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å. Science, 272, 1136-1144.
    • (1996) Science , vol.272 , pp. 1136-1144
    • Tsukihara, T.1    Aoyama, H.2    Yamashita, E.3
  • 103
    • 35248880386 scopus 로고    scopus 로고
    • Mitochondrial DNA recombination in a free-ranging Australian lizard
    • Ujvari B, Dowton M, Madsen T, (2007) Mitochondrial DNA recombination in a free-ranging Australian lizard. Biology Letters, 3, 189-192.
    • (2007) Biology Letters , vol.3 , pp. 189-192
    • Ujvari, B.1    Dowton, M.2    Madsen, T.3
  • 104
    • 84877753222 scopus 로고    scopus 로고
    • Nocturnal light environments influence color vision and signatures of selection on the OPN1SW opsin gene in nocturnal lemurs
    • Veilleux CC, Louis EE, Bolnick DA, (2013) Nocturnal light environments influence color vision and signatures of selection on the OPN1SW opsin gene in nocturnal lemurs. Molecular Biology and Evolution, 30, 1420-1437.
    • (2013) Molecular Biology and Evolution , vol.30 , pp. 1420-1437
    • Veilleux, C.C.1    Louis, E.E.2    Bolnick, D.A.3
  • 105
    • 23844558266 scopus 로고    scopus 로고
    • A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine
    • Wallace DC, (2005) A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine. Annual Review of Genetics, 39, 359.
    • (2005) Annual Review of Genetics , vol.39 , pp. 359
    • Wallace, D.C.1
  • 106
    • 79955437094 scopus 로고    scopus 로고
    • A productivity-based explanation for woodland bird declines: poorer soils yield less food
    • Watson DM, (2011) A productivity-based explanation for woodland bird declines: poorer soils yield less food. Emu, 111, 10-18.
    • (2011) Emu , vol.111 , pp. 10-18
    • Watson, D.M.1
  • 108
    • 18744396970 scopus 로고    scopus 로고
    • Physiological adaptation in desert birds
    • Williams JB, Tieleman BI, (2005) Physiological adaptation in desert birds. BioScience, 55, 416-425.
    • (2005) BioScience , vol.55 , pp. 416-425
    • Williams, J.B.1    Tieleman, B.I.2
  • 109
    • 0346743541 scopus 로고    scopus 로고
    • Impact of disease-related mitochondrial mutations on tRNA structure and function
    • Wittenhagen LM, Kelley SO, (2003) Impact of disease-related mitochondrial mutations on tRNA structure and function. Trends in Biochemical Sciences, 28, 605-611.
    • (2003) Trends in Biochemical Sciences , vol.28 , pp. 605-611
    • Wittenhagen, L.M.1    Kelley, S.O.2
  • 111
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z, (1998) Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Molecular Biology and Evolution, 15, 568-573.
    • (1998) Molecular Biology and Evolution , vol.15 , pp. 568-573
    • Yang, Z.1
  • 112
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution, 24, 1586-1591.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 113
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z, Nielsen R, Goldman N, Pedersen A-MK, (2000) Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics, 155, 431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.-M.K.4
  • 114
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WS, Nielsen R, (2005) Bayes empirical Bayes inference of amino acid sites under positive selection. Molecular Biology and Evolution, 22, 1107-1118.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 115
    • 0033946992 scopus 로고    scopus 로고
    • Food shortage in small fragments: evidence from an area-sensitive passerine
    • Zanette L, Doyle P, Trémont SM, (2000) Food shortage in small fragments: evidence from an area-sensitive passerine. Ecology, 81, 1654-1666.
    • (2000) Ecology , vol.81 , pp. 1654-1666
    • Zanette, L.1    Doyle, P.2    Trémont, S.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.