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Volumn 48, Issue 9, 2015, Pages 609-616

Comparison of different DNA binding fluorescent dyes for applications of high-resolution melting analysis

Author keywords

Fluorescent dyes; Genotyping; High resolution melting; HRM; Screening

Indexed keywords

FLUORESCENT DYE; DNA;

EID: 84929945470     PISSN: 00099120     EISSN: 18732933     Source Type: Journal    
DOI: 10.1016/j.clinbiochem.2015.01.010     Document Type: Article
Times cited : (29)

References (35)
  • 1
    • 0031568919 scopus 로고    scopus 로고
    • Product differentiation by analysis of DNA melting curves during the polymerase chain reaction
    • Ririe K.M., Rasmussen R.P., Wittwer C.T. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal Biochem 1997, 245:154-160.
    • (1997) Anal Biochem , vol.245 , pp. 154-160
    • Ririe, K.M.1    Rasmussen, R.P.2    Wittwer, C.T.3
  • 3
    • 34249877249 scopus 로고    scopus 로고
    • Simultaneous mutation scanning and genotyping by high-resolution DNA melting analysis
    • Montgomery J., Wittwer C.T., Palais R., Zhou L. Simultaneous mutation scanning and genotyping by high-resolution DNA melting analysis. Nat Protoc 2007, 2:59-66.
    • (2007) Nat Protoc , vol.2 , pp. 59-66
    • Montgomery, J.1    Wittwer, C.T.2    Palais, R.3    Zhou, L.4
  • 4
    • 0037371570 scopus 로고    scopus 로고
    • Amplicon melting analysis with labeled primers: a closed-tube method for differentiating homozygotes and heterozygotes
    • Gundry C.N., Vandersteen J.G., Reed G.H., Pryor R.J., Chen J., Wittwer C.T. Amplicon melting analysis with labeled primers: a closed-tube method for differentiating homozygotes and heterozygotes. Clin Chem 2003, 49:396-406.
    • (2003) Clin Chem , vol.49 , pp. 396-406
    • Gundry, C.N.1    Vandersteen, J.G.2    Reed, G.H.3    Pryor, R.J.4    Chen, J.5    Wittwer, C.T.6
  • 6
    • 3042651880 scopus 로고    scopus 로고
    • Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons
    • Liew M., Pryor R., Palais R., Meadows C., Erali M., Lyon E., et al. Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons. Clin Chem 2004, 50:1156-1164.
    • (2004) Clin Chem , vol.50 , pp. 1156-1164
    • Liew, M.1    Pryor, R.2    Palais, R.3    Meadows, C.4    Erali, M.5    Lyon, E.6
  • 7
    • 43849098381 scopus 로고    scopus 로고
    • Detection of alpha-thalassemia-1 Southeast Asian type using real-time gap-PCR with SYBR Green1 and high resolution melting analysis
    • Pornprasert S., Phusua A., Suanta S., Saetung R., Sanguansermsri T. Detection of alpha-thalassemia-1 Southeast Asian type using real-time gap-PCR with SYBR Green1 and high resolution melting analysis. Eur J Haematol 2008, 80:510-514.
    • (2008) Eur J Haematol , vol.80 , pp. 510-514
    • Pornprasert, S.1    Phusua, A.2    Suanta, S.3    Saetung, R.4    Sanguansermsri, T.5
  • 8
    • 58149387544 scopus 로고    scopus 로고
    • Detection and identification of beta-thalassemia 3.5kb deletion by SYBR Green1 and high resolution melting analysis
    • Prathomtanapong P., Pornprasert S., Phusua A., Suanta S., Saetung R., Sanguansermsri T. Detection and identification of beta-thalassemia 3.5kb deletion by SYBR Green1 and high resolution melting analysis. Eur J Haematol 2009, 82:159-160.
    • (2009) Eur J Haematol , vol.82 , pp. 159-160
    • Prathomtanapong, P.1    Pornprasert, S.2    Phusua, A.3    Suanta, S.4    Saetung, R.5    Sanguansermsri, T.6
  • 9
    • 73549086050 scopus 로고    scopus 로고
    • High-resolution melting analysis for genotyping of the myotonic dystrophy type 1 associated Alu insertion/deletion polymorphism
    • Radvansky J., Resko P., Surovy M., Minarik G., Ficek A., Kadasi L. High-resolution melting analysis for genotyping of the myotonic dystrophy type 1 associated Alu insertion/deletion polymorphism. Anal Biochem 2010, 398:126-128.
    • (2010) Anal Biochem , vol.398 , pp. 126-128
    • Radvansky, J.1    Resko, P.2    Surovy, M.3    Minarik, G.4    Ficek, A.5    Kadasi, L.6
  • 10
    • 4644245816 scopus 로고    scopus 로고
    • Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis
    • Reed G.H., Wittwer C.T. Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis. Clin Chem 2004, 50:1748-1754.
    • (2004) Clin Chem , vol.50 , pp. 1748-1754
    • Reed, G.H.1    Wittwer, C.T.2
  • 11
    • 3242794909 scopus 로고    scopus 로고
    • Detection of c-kit-activating mutations in gastrointestinal stromal tumors by high-resolution amplicon melting analysis
    • Willmore C., Holden J.A., Zhou L., Tripp S., Wittwer C.T., Layfield L.J. Detection of c-kit-activating mutations in gastrointestinal stromal tumors by high-resolution amplicon melting analysis. Am J Clin Pathol 2004, 122:206-216.
    • (2004) Am J Clin Pathol , vol.122 , pp. 206-216
    • Willmore, C.1    Holden, J.A.2    Zhou, L.3    Tripp, S.4    Wittwer, C.T.5    Layfield, L.J.6
  • 12
    • 3242813606 scopus 로고    scopus 로고
    • High-resolution DNA melting curve analysis to establish HLA genotypic identity
    • Zhou L., Vandersteen J., Wang L., Fuller T., Taylor M., Palais B., et al. High-resolution DNA melting curve analysis to establish HLA genotypic identity. Tissue Antigens 2004, 64:156-164.
    • (2004) Tissue Antigens , vol.64 , pp. 156-164
    • Zhou, L.1    Vandersteen, J.2    Wang, L.3    Fuller, T.4    Taylor, M.5    Palais, B.6
  • 13
    • 35648969073 scopus 로고    scopus 로고
    • Methylation-sensitive high-resolution melting-curve analysis of the SNRPN gene as a diagnostic screen for Prader-Willi and Angelman syndromes
    • White H.E., Hall V.J., Cross N.C. Methylation-sensitive high-resolution melting-curve analysis of the SNRPN gene as a diagnostic screen for Prader-Willi and Angelman syndromes. Clin Chem 2007, 53:1960-1962.
    • (2007) Clin Chem , vol.53 , pp. 1960-1962
    • White, H.E.1    Hall, V.J.2    Cross, N.C.3
  • 14
    • 4344610322 scopus 로고    scopus 로고
    • High-resolution melting analysis for detection of internal tandem duplications
    • Vaughn C.P., Elenitoba-Johnson K.S. High-resolution melting analysis for detection of internal tandem duplications. J Mol Diagn 2004, 6:211-216.
    • (2004) J Mol Diagn , vol.6 , pp. 211-216
    • Vaughn, C.P.1    Elenitoba-Johnson, K.S.2
  • 15
    • 84879550576 scopus 로고    scopus 로고
    • The origin of the giant liver fluke, Fascioloides magna (Trematoda: Fasciolidae) from Croatia determined by high-resolution melting screening of mitochondrial cox1 haplotypes
    • Bazsalovicsova E., Kralova-Hromadova I., Radvanszky J., Beck R. The origin of the giant liver fluke, Fascioloides magna (Trematoda: Fasciolidae) from Croatia determined by high-resolution melting screening of mitochondrial cox1 haplotypes. Parasitol Res 2013, 112:2661-2666.
    • (2013) Parasitol Res , vol.112 , pp. 2661-2666
    • Bazsalovicsova, E.1    Kralova-Hromadova, I.2    Radvanszky, J.3    Beck, R.4
  • 16
    • 78751566455 scopus 로고    scopus 로고
    • Development of high-resolution melting (HRM) analysis for population studies of Fascioloides magna (Trematoda: Fasciolidae), the giant liver fluke of ruminants
    • Radvansky J., Bazsalovicsova E., Kralova-Hromadova I., Minarik G., Kadasi L. Development of high-resolution melting (HRM) analysis for population studies of Fascioloides magna (Trematoda: Fasciolidae), the giant liver fluke of ruminants. Parasitol Res 2011, 108:201-209.
    • (2011) Parasitol Res , vol.108 , pp. 201-209
    • Radvansky, J.1    Bazsalovicsova, E.2    Kralova-Hromadova, I.3    Minarik, G.4    Kadasi, L.5
  • 17
    • 80053443652 scopus 로고    scopus 로고
    • The use of melting curves as a novel approach for validation of real-time PCR instruments
    • Von Keyserling H., Bergmann T., Wiesel M., Kaufmann A.M. The use of melting curves as a novel approach for validation of real-time PCR instruments. Biotechniques 2011, 51:179-184.
    • (2011) Biotechniques , vol.51 , pp. 179-184
    • Von Keyserling, H.1    Bergmann, T.2    Wiesel, M.3    Kaufmann, A.M.4
  • 18
    • 33644548649 scopus 로고    scopus 로고
    • Amplicon DNA melting analysis for mutation scanning and genotyping: cross-platform comparison of instruments and dyes
    • Herrmann M.G., Durtschi J.D., Bromley L.K., Wittwer C.T., Voelkerding K.V. Amplicon DNA melting analysis for mutation scanning and genotyping: cross-platform comparison of instruments and dyes. Clin Chem 2006, 52:494-503.
    • (2006) Clin Chem , vol.52 , pp. 494-503
    • Herrmann, M.G.1    Durtschi, J.D.2    Bromley, L.K.3    Wittwer, C.T.4    Voelkerding, K.V.5
  • 19
    • 84878869497 scopus 로고    scopus 로고
    • High-resolution melt analysis to detect sequence variations in highly homologous gene regions: application to CYP2B6
    • Twist G.P., Gaedigk R., Leeder J.S., Gaedigk A. High-resolution melt analysis to detect sequence variations in highly homologous gene regions: application to CYP2B6. Pharmacogenomics 2013, 14:913-922.
    • (2013) Pharmacogenomics , vol.14 , pp. 913-922
    • Twist, G.P.1    Gaedigk, R.2    Leeder, J.S.3    Gaedigk, A.4
  • 20
    • 33846641709 scopus 로고    scopus 로고
    • High resolution melting analysis for the rapid and sensitive detection of mutations in clinical samples: KRAS codon 12 and 13 mutations in non-small cell lung cancer
    • Krypuy M., Newnham G.M., Thomas D.M., Conron M., Dobrovic A. High resolution melting analysis for the rapid and sensitive detection of mutations in clinical samples: KRAS codon 12 and 13 mutations in non-small cell lung cancer. BMC Cancer 2006, 6:295.
    • (2006) BMC Cancer , vol.6 , pp. 295
    • Krypuy, M.1    Newnham, G.M.2    Thomas, D.M.3    Conron, M.4    Dobrovic, A.5
  • 21
    • 84866135069 scopus 로고    scopus 로고
    • Rapid identification of heterozygous and homozygous hemoglobin constant spring by SYTO9 with a high resolution melting analysis
    • Pornprasert S., Sitthichai P., Waneesorn J., Kongthai K., Singboottra P. Rapid identification of heterozygous and homozygous hemoglobin constant spring by SYTO9 with a high resolution melting analysis. Clin Lab 2012, 58:829-833.
    • (2012) Clin Lab , vol.58 , pp. 829-833
    • Pornprasert, S.1    Sitthichai, P.2    Waneesorn, J.3    Kongthai, K.4    Singboottra, P.5
  • 22
    • 84871505141 scopus 로고    scopus 로고
    • Development of a high resolution melting method for genotyping of risk HLA-DQA1 and PLA2R1 alleles and ethnic distribution of these risk alleles
    • Cui G., Zhang L., Xu Y., Cianflone K., Ding H., Wang D.W. Development of a high resolution melting method for genotyping of risk HLA-DQA1 and PLA2R1 alleles and ethnic distribution of these risk alleles. Gene 2013, 514:125-130.
    • (2013) Gene , vol.514 , pp. 125-130
    • Cui, G.1    Zhang, L.2    Xu, Y.3    Cianflone, K.4    Ding, H.5    Wang, D.W.6
  • 23
    • 57749189098 scopus 로고    scopus 로고
    • Influencing factors of dsDNA dye (high-resolution) melting curves and improved genotype call based on thermodynamic considerations
    • Schutz E., von Ahsen N. Influencing factors of dsDNA dye (high-resolution) melting curves and improved genotype call based on thermodynamic considerations. Anal Biochem 2009, 385:143-152.
    • (2009) Anal Biochem , vol.385 , pp. 143-152
    • Schutz, E.1    von Ahsen, N.2
  • 25
    • 34547567980 scopus 로고    scopus 로고
    • OligoCalc: an online oligonucleotide properties calculator
    • Kibbe W.A. OligoCalc: an online oligonucleotide properties calculator. Nucleic Acids Res 2007, 35:W43-W46.
    • (2007) Nucleic Acids Res , vol.35 , pp. W43-W46
    • Kibbe, W.A.1
  • 26
    • 3142708522 scopus 로고    scopus 로고
    • Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications
    • Zipper H., Brunner H., Bernhagen J., Vitzthum F. Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications. Nucleic Acids Res. 2004, 32:e103.
    • (2004) Nucleic Acids Res. , vol.32 , pp. e103
    • Zipper, H.1    Brunner, H.2    Bernhagen, J.3    Vitzthum, F.4
  • 27
    • 0027416569 scopus 로고
    • Characterization and polymerase chain reaction (PCR) detection of an Alu deletion polymorphism in total linkage disequilibrium with myotonic dystrophy
    • Mahadevan M.S., Foitzik M.A., Surh L.C., Korneluk R.G. Characterization and polymerase chain reaction (PCR) detection of an Alu deletion polymorphism in total linkage disequilibrium with myotonic dystrophy. Genomics 1993, 15:446-448.
    • (1993) Genomics , vol.15 , pp. 446-448
    • Mahadevan, M.S.1    Foitzik, M.A.2    Surh, L.C.3    Korneluk, R.G.4
  • 28
    • 34250633774 scopus 로고    scopus 로고
    • Expanded instrument comparison of amplicon DNA melting analysis for mutation scanning and genotyping
    • Herrmann M.G., Durtschi J.D., Wittwer C.T., Voelkerding K.V. Expanded instrument comparison of amplicon DNA melting analysis for mutation scanning and genotyping. Clin Chem 2007, 53:1544-1548.
    • (2007) Clin Chem , vol.53 , pp. 1544-1548
    • Herrmann, M.G.1    Durtschi, J.D.2    Wittwer, C.T.3    Voelkerding, K.V.4
  • 29
    • 15544371286 scopus 로고    scopus 로고
    • Comparison of SYTO9 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis
    • Monis P.T., Giglio S., Saint C.P. Comparison of SYTO9 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis. Anal Biochem 2005, 340:24-34.
    • (2005) Anal Biochem , vol.340 , pp. 24-34
    • Monis, P.T.1    Giglio, S.2    Saint, C.P.3
  • 30
    • 36148978172 scopus 로고    scopus 로고
    • Comparison of multiple DNA dyes for real-time PCR: effects of dye concentration and sequence composition on DNA amplification and melting temperature
    • Gudnason H., Dufva M., Bang D.D., Wolff A. Comparison of multiple DNA dyes for real-time PCR: effects of dye concentration and sequence composition on DNA amplification and melting temperature. Nucleic Acids Res 2007, 35:e127.
    • (2007) Nucleic Acids Res , vol.35 , pp. e127
    • Gudnason, H.1    Dufva, M.2    Bang, D.D.3    Wolff, A.4
  • 31
    • 79960653378 scopus 로고    scopus 로고
    • SYTO dyes and EvaGreen outperform SYBR Green in real-time PCR
    • Eischeid A.C. SYTO dyes and EvaGreen outperform SYBR Green in real-time PCR. BMC Res Notes 2011, 4:263.
    • (2011) BMC Res Notes , vol.4 , pp. 263
    • Eischeid, A.C.1
  • 32
    • 34547639077 scopus 로고    scopus 로고
    • Unlabeled oligonucleotides as internal temperature controls for genotyping by amplicon melting
    • Seipp M.T., Durtschi J.D., Liew M.A., Williams J., Damjanovich K., Pont-Kingdon G., et al. Unlabeled oligonucleotides as internal temperature controls for genotyping by amplicon melting. J Mol Diagn 2007, 9:284-289.
    • (2007) J Mol Diagn , vol.9 , pp. 284-289
    • Seipp, M.T.1    Durtschi, J.D.2    Liew, M.A.3    Williams, J.4    Damjanovich, K.5    Pont-Kingdon, G.6
  • 33
    • 45549101581 scopus 로고    scopus 로고
    • Base-pair neutral homozygotes can be discriminated by calibrated high-resolution melting of small amplicons
    • Gundry C.N., Dobrowolski S.F., Martin Y.R., Robbins T.C., Nay L.M., Boyd N., et al. Base-pair neutral homozygotes can be discriminated by calibrated high-resolution melting of small amplicons. Nucleic Acids Res 2008, 36:3401-3408.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3401-3408
    • Gundry, C.N.1    Dobrowolski, S.F.2    Martin, Y.R.3    Robbins, T.C.4    Nay, L.M.5    Boyd, N.6
  • 34
    • 84893457532 scopus 로고    scopus 로고
    • DNA concentration can specify DNA melting point in a high-resolution melting analysis master mix
    • Ng J.W., Holt D.C., Andersson P., Giffard P.M. DNA concentration can specify DNA melting point in a high-resolution melting analysis master mix. Clin Chem 2014, 60:414-416.
    • (2014) Clin Chem , vol.60 , pp. 414-416
    • Ng, J.W.1    Holt, D.C.2    Andersson, P.3    Giffard, P.M.4
  • 35
    • 0024039744 scopus 로고
    • Mechanism of fluorescence concentration quenching of carboxyfluorescein in liposomes: energy transfer to nonfluorescent dimers
    • Chen R.F., Knutson J.R. Mechanism of fluorescence concentration quenching of carboxyfluorescein in liposomes: energy transfer to nonfluorescent dimers. Anal Biochem 1988, 172:61-77.
    • (1988) Anal Biochem , vol.172 , pp. 61-77
    • Chen, R.F.1    Knutson, J.R.2


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