Transcriptome-wide identification of adenosine-to-inosine editing using the ICE-seq method

Nature Protocols

Volumn 10, Issue 5, 2015, Pages 715-732

  Suzuki, Tsutomu ^a   Ueda, Hiroki ^a   Okada, Shunpei ^a   Sakurai, Masayuki ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ACRYLONITRILE; CYCLIN DEPENDENT KINASE; CYCLIN DEPENDENT KINASE 13; DIHYDROFOLATE REDUCTASE; MESSENGER RNA; TRANSCRIPTOME; UNCLASSIFIED DRUG; ADENOSINE; COMPLEMENTARY DNA; INOSINE;

3' UNTRANSLATED REGION; ACCURACY; ADAR1 GENE; ADAR2 GENE; ADENOSINE TO INOSINE RNA EDITING; ALU SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; CHEMICAL MODIFICATION; CYANOETHYLATION; DNA LIBRARY; EXPERIMENTAL DESIGN; FALSE POSITIVE RESULT; GENE; GENE AMPLIFICATION; GENETIC SCREENING; HUMAN; INOSINE CHEMICAL ERASING DEEP SEQUENCING METHOD; INTERMETHOD COMPARISON; NONHUMAN; PRIORITY JOURNAL; RELIABILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EDITING; RNA EDITING SITE; RNA SEQUENCE; RNA STRUCTURE; SENSITIVITY ANALYSIS; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; SINGLE NUCLEOTIDE POLYMORPHISM; TRANSCRIPTOMICS; BIOCHEMISTRY; BRAIN; CELL CULTURE; CHEMISTRY; CYTOLOGY; DEVICES; GENE EXPRESSION PROFILING; GENE LIBRARY; GENOME; HIGH THROUGHPUT SEQUENCING; PHYSIOLOGY; PROCEDURES; SOFTWARE;

METAZOA;

ADENOSINE; BIOCHEMISTRY; BRAIN; CELLS, CULTURED; DNA, COMPLEMENTARY; GENE EXPRESSION PROFILING; GENE LIBRARY; GENOME; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; INOSINE; POLYMORPHISM, SINGLE NUCLEOTIDE; RNA EDITING; SOFTWARE;

EID: 84929464373     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2015.037     Document Type: Article

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