메뉴 건너뛰기




Volumn 112, Issue 19, 2015, Pages E2437-E2446

Structure-relaxation mechanism for the response of T4 lysozyme cavity mutants to hydrostatic pressure

Author keywords

Conformational exchange; DEER; EPR; Protein structural dynamics

Indexed keywords

LYSOZYME; LIGAND; SOLVENT;

EID: 84929164097     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1506505112     Document Type: Article
Times cited : (34)

References (61)
  • 1
    • 84887470278 scopus 로고    scopus 로고
    • Conformational selection and adaptation to ligand binding in T4 lysozyme cavity mutants
    • López CJ, Yang Z, Altenbach C, Hubbell WL (2013) Conformational selection and adaptation to ligand binding in T4 lysozyme cavity mutants. Proc Natl Acad Sci USA 110(46):E4306-E4315.
    • (2013) Proc Natl Acad Sci USA , vol.110 , Issue.46 , pp. E4306-E4315
    • López, C.J.1    Yang, Z.2    Altenbach, C.3    Hubbell, W.L.4
  • 2
    • 0242569215 scopus 로고    scopus 로고
    • Spectroscopic evidence that osmolytes used in crystallization buffers inhibit a conformation change in a membrane protein
    • Fanucci GE, Lee JY, Cafiso DS (2003) Spectroscopic evidence that osmolytes used in crystallization buffers inhibit a conformation change in a membrane protein. Biochemistry 42(45):13106-13112.
    • (2003) Biochemistry , vol.42 , Issue.45 , pp. 13106-13112
    • Fanucci, G.E.1    Lee, J.Y.2    Cafiso, D.S.3
  • 3
    • 84908099385 scopus 로고    scopus 로고
    • Identifying and quantitating conformational exchange in membrane proteins using site-directed spin labeling
    • Cafiso DS (2014) Identifying and quantitating conformational exchange in membrane proteins using site-directed spin labeling. Acc Chem Res 47(10):3102-3109.
    • (2014) Acc Chem Res , vol.47 , Issue.10 , pp. 3102-3109
    • Cafiso, D.S.1
  • 4
    • 0034680315 scopus 로고    scopus 로고
    • Flexibility and ligand exchange in a buried cavity mutant of T4 lysozyme studied by multinuclear NMR
    • Mulder FA, Hon B, Muhandiram DR, Dahlquist FW, Kay LE (2000) Flexibility and ligand exchange in a buried cavity mutant of T4 lysozyme studied by multinuclear NMR. Biochemistry 39(41):12614-12622.
    • (2000) Biochemistry , vol.39 , Issue.41 , pp. 12614-12622
    • Mulder, F.A.1    Hon, B.2    Muhandiram, D.R.3    Dahlquist, F.W.4    Kay, L.E.5
  • 5
    • 80052401629 scopus 로고    scopus 로고
    • Solution structure of a minor and transiently formed state of a T4 lysozyme mutant
    • Bouvignies G, et al. (2011) Solution structure of a minor and transiently formed state of a T4 lysozyme mutant. Nature 477(7362):111-114.
    • (2011) Nature , vol.477 , Issue.7362 , pp. 111-114
    • Bouvignies, G.1
  • 6
    • 70350348011 scopus 로고    scopus 로고
    • NMR spectroscopy brings invisible protein states into focus
    • Baldwin AJ, Kay LE (2009) NMR spectroscopy brings invisible protein states into focus. Nat Chem Biol 5(11):808-814.
    • (2009) Nat Chem Biol , vol.5 , Issue.11 , pp. 808-814
    • Baldwin, A.J.1    Kay, L.E.2
  • 7
    • 37249032102 scopus 로고    scopus 로고
    • Dynamic personalities of proteins
    • Henzler-Wildman K, Kern D (2007) Dynamic personalities of proteins. Nature 450(7172):964-972.
    • (2007) Nature , vol.450 , Issue.7172 , pp. 964-972
    • Henzler-Wildman, K.1    Kern, D.2
  • 8
    • 77956501272 scopus 로고    scopus 로고
    • A transient and low-populated protein-folding intermediate at atomic resolution
    • Korzhnev DM, Religa TL, Banachewicz W, Fersht AR, Kay LE (2010) A transient and low-populated protein-folding intermediate at atomic resolution. Science 329(5997):1312-1316.
    • (2010) Science , vol.329 , Issue.5997 , pp. 1312-1316
    • Korzhnev, D.M.1    Religa, T.L.2    Banachewicz, W.3    Fersht, A.R.4    Kay, L.E.5
  • 9
    • 84860013075 scopus 로고    scopus 로고
    • Structure of an intermediate state in protein folding and aggregation
    • Neudecker P, et al. (2012) Structure of an intermediate state in protein folding and aggregation. Science 336(6079):362-366.
    • (2012) Science , vol.336 , Issue.6079 , pp. 362-366
    • Neudecker, P.1
  • 10
    • 33646900712 scopus 로고    scopus 로고
    • Probing conformational fluctuation of proteins by pressure perturbation
    • Akasaka K (2006) Probing conformational fluctuation of proteins by pressure perturbation. Chem Rev 106(5):1814-1835.
    • (2006) Chem Rev , vol.106 , Issue.5 , pp. 1814-1835
    • Akasaka, K.1
  • 11
    • 84901852369 scopus 로고    scopus 로고
    • Pressure and protein dynamism
    • Akasaka K (2014) Pressure and protein dynamism. High Press Res 34(2):222-235.
    • (2014) High Press Res , vol.34 , Issue.2 , pp. 222-235
    • Akasaka, K.1
  • 12
    • 14644424521 scopus 로고    scopus 로고
    • NMR snapshots of a fluctuating protein structure: Ubiquitin at 30 bar-3 kbar
    • Kitahara R, Yokoyama S, Akasaka K (2005) NMR snapshots of a fluctuating protein structure: Ubiquitin at 30 bar-3 kbar. J Mol Biol 347(2):277-285.
    • (2005) J Mol Biol , vol.347 , Issue.2 , pp. 277-285
    • Kitahara, R.1    Yokoyama, S.2    Akasaka, K.3
  • 13
    • 0034711091 scopus 로고    scopus 로고
    • High pressure NMR reveals active-site hinge motion of folate-bound Escherichia coli dihydrofolate reductase
    • Kitahara R, et al. (2000) High pressure NMR reveals active-site hinge motion of folate-bound Escherichia coli dihydrofolate reductase. Biochemistry 39(42):12789-12795.
    • (2000) Biochemistry , vol.39 , Issue.42 , pp. 12789-12795
    • Kitahara, R.1
  • 14
    • 54349114270 scopus 로고    scopus 로고
    • Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation
    • Ando N, et al. (2008) Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation. Biochemistry 47(42):11097-11109.
    • (2008) Biochemistry , vol.47 , Issue.42 , pp. 11097-11109
    • Ando, N.1
  • 15
    • 70449639550 scopus 로고    scopus 로고
    • Origins of pressure-induced protein transitions
    • Chalikian TV, Macgregor RB, Jr (2009) Origins of pressure-induced protein transitions. J Mol Biol 394(5):834-842.
    • (2009) J Mol Biol , vol.394 , Issue.5 , pp. 834-842
    • Chalikian, T.V.1    Macgregor, R.B.2
  • 16
    • 0029040518 scopus 로고
    • NMR study of the cold, heat, and pressure unfolding of ribonuclease A
    • Zhang J, Peng X, Jonas A, Jonas J (1995) NMR study of the cold, heat, and pressure unfolding of ribonuclease A. Biochemistry 34(27):8631-8641.
    • (1995) Biochemistry , vol.34 , Issue.27 , pp. 8631-8641
    • Zhang, J.1    Peng, X.2    Jonas, A.3    Jonas, J.4
  • 17
    • 0037171132 scopus 로고    scopus 로고
    • Pressure-temperature phase diagrams of biomolecules
    • Smeller L (2002) Pressure-temperature phase diagrams of biomolecules. Biochim Biophys Acta 1595(1-2):11-29.
    • (2002) Biochim Biophys Acta , vol.1595 , Issue.1-2 , pp. 11-29
    • Smeller, L.1
  • 18
    • 0019874678 scopus 로고
    • Effect of hydrostatic pressure on lysozyme and chymotrypsinogen detected by fluorescence polarization
    • Chryssomallis GS, Torgerson PM, Drickamer HG, Weber G (1981) Effect of hydrostatic pressure on lysozyme and chymotrypsinogen detected by fluorescence polarization. Biochemistry 20(14):3955-3959.
    • (1981) Biochemistry , vol.20 , Issue.14 , pp. 3955-3959
    • Chryssomallis, G.S.1    Torgerson, P.M.2    Drickamer, H.G.3    Weber, G.4
  • 19
    • 84880709930 scopus 로고    scopus 로고
    • High-pressure biochemistry and biophysics
    • Meersman F, et al. (2013) High-pressure biochemistry and biophysics. Rev Mineral Geochem 75(1):607-648.
    • (2013) Rev Mineral Geochem , vol.75 , Issue.1 , pp. 607-648
    • Meersman, F.1
  • 20
    • 0036231272 scopus 로고    scopus 로고
    • Comparative Fourier transform infrared spectroscopy study of cold-, pressure-, and heat-induced unfolding and aggregation of myoglobin
    • Meersman F, Smeller L, Heremans K (2002) Comparative Fourier transform infrared spectroscopy study of cold-, pressure-, and heat-induced unfolding and aggregation of myoglobin. Biophys J 82(5):2635-2644.
    • (2002) Biophys J , vol.82 , Issue.5 , pp. 2635-2644
    • Meersman, F.1    Smeller, L.2    Heremans, K.3
  • 21
    • 84860829715 scopus 로고    scopus 로고
    • Cavities determine the pressure unfolding of proteins
    • Roche J, et al. (2012) Cavities determine the pressure unfolding of proteins. Proc Natl Acad Sci USA 109(18):6945-6950.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.18 , pp. 6945-6950
    • Roche, J.1
  • 22
    • 28044463816 scopus 로고    scopus 로고
    • Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation
    • Collins MD, Hummer G, Quillin ML, Matthews BW, Gruner SM (2005) Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation. Proc Natl Acad Sci USA 102(46):16668-16671.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.46 , pp. 16668-16671
    • Collins, M.D.1    Hummer, G.2    Quillin, M.L.3    Matthews, B.W.4    Gruner, S.M.5
  • 23
    • 79955975933 scopus 로고    scopus 로고
    • Cavity hydration as a gateway to unfolding: An NMR study of hen lysozyme at high pressure and low temperature
    • Kamatari YO, Smith LJ, Dobson CM, Akasaka K (2011) Cavity hydration as a gateway to unfolding: An NMR study of hen lysozyme at high pressure and low temperature. Biophys Chem 156(1):24-30.
    • (2011) Biophys Chem , vol.156 , Issue.1 , pp. 24-30
    • Kamatari, Y.O.1    Smith, L.J.2    Dobson, C.M.3    Akasaka, K.4
  • 24
    • 0035479686 scopus 로고    scopus 로고
    • Filling a cavity dramatically increases pressure stability of the c-Myb R2 subdomain
    • Lassalle MW, et al. (2001) Filling a cavity dramatically increases pressure stability of the c-Myb R2 subdomain. Proteins 45(1):96-101.
    • (2001) Proteins , vol.45 , Issue.1 , pp. 96-101
    • Lassalle, M.W.1
  • 25
    • 0032539604 scopus 로고    scopus 로고
    • The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins
    • Hummer G, Garde S, García AE, Paulaitis ME, Pratt LR (1998) The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins. Proc Natl Acad Sci USA 95(4):1552-1555.
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.4 , pp. 1552-1555
    • Hummer, G.1    Garde, S.2    García, A.E.3    Paulaitis, M.E.4    Pratt, L.R.5
  • 26
    • 79954549743 scopus 로고    scopus 로고
    • Size and sequence and the volume change of protein folding
    • Rouget J-B, et al. (2011) Size and sequence and the volume change of protein folding. J Am Chem Soc 133(15):6020-6027.
    • (2011) J Am Chem Soc , vol.133 , Issue.15 , pp. 6020-6027
    • Rouget, J.-B.1
  • 27
    • 84907192008 scopus 로고    scopus 로고
    • Role of cavities and hydration in the pressure unfolding of T4 lysozyme
    • Nucci NV, Fuglestad B, Athanasoula EA, Wand AJ (2014) Role of cavities and hydration in the pressure unfolding of T4 lysozyme. Proc Natl Acad Sci USA 111(38):13846-13851.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.38 , pp. 13846-13851
    • Nucci, N.V.1    Fuglestad, B.2    Athanasoula, E.A.3    Wand, A.J.4
  • 28
    • 84925799537 scopus 로고    scopus 로고
    • Exploring volume, compressibility and hydration changes of folded proteins upon compression
    • Voloshin VP, Medvedev NN, Smolin N, Geiger A, Winter R (2015) Exploring volume, compressibility and hydration changes of folded proteins upon compression. Phys Chem Chem Phys 17(13):8499-8508.
    • (2015) Phys Chem Chem Phys , vol.17 , Issue.13 , pp. 8499-8508
    • Voloshin, V.P.1    Medvedev, N.N.2    Smolin, N.3    Geiger, A.4    Winter, R.5
  • 29
    • 0029878188 scopus 로고    scopus 로고
    • High-pressure denaturation of staphylococcal nuclease proline-to-glycine substitution mutants
    • Vidugiris GJA, Truckses DM, Markley JL, Royer CA (1996) High-pressure denaturation of staphylococcal nuclease proline-to-glycine substitution mutants. Biochemistry 35(12):3857-3864.
    • (1996) Biochemistry , vol.35 , Issue.12 , pp. 3857-3864
    • Vidugiris, G.J.A.1    Truckses, D.M.2    Markley, J.L.3    Royer, C.A.4
  • 30
    • 84889671229 scopus 로고    scopus 로고
    • Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin
    • Lerch MT, Horwitz J, McCoy J, Hubbell WL (2013) Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin. Proc Natl Acad Sci USA 110(49):E4714-E4722.
    • (2013) Proc Natl Acad Sci USA , vol.110 , Issue.49 , pp. E4714-E4722
    • Lerch, M.T.1    Horwitz, J.2    McCoy, J.3    Hubbell, W.L.4
  • 31
    • 84920994522 scopus 로고    scopus 로고
    • Cavity as a source of conformational fluctuation and high-energy state: High-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme
    • Maeno A, et al. (2015) Cavity as a source of conformational fluctuation and high-energy state: High-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme. Biophys J 108(1):133-145.
    • (2015) Biophys J , vol.108 , Issue.1 , pp. 133-145
    • Maeno, A.1
  • 32
    • 0029067489 scopus 로고
    • Specificity of ligand binding in a buried nonpolar cavity of T4 lysozyme: Linkage of dynamics and structural plasticity
    • Morton A, Matthews BW (1995) Specificity of ligand binding in a buried nonpolar cavity of T4 lysozyme: Linkage of dynamics and structural plasticity. Biochemistry 34(27):8576-8588.
    • (1995) Biochemistry , vol.34 , Issue.27 , pp. 8576-8588
    • Morton, A.1    Matthews, B.W.2
  • 33
    • 0026567907 scopus 로고
    • Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect
    • Eriksson AE, et al. (1992) Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect. Science 255(5041):178-183.
    • (1992) Science , vol.255 , Issue.5041 , pp. 178-183
    • Eriksson, A.E.1
  • 34
    • 0032571307 scopus 로고    scopus 로고
    • Generation of ligand binding sites in T4 lysozyme by deficiency-creating substitutions
    • Baldwin E, Baase WA, Zhang XJ, Feher V, Matthews BW (1998) Generation of ligand binding sites in T4 lysozyme by deficiency-creating substitutions. J Mol Biol 277(2):467-485.
    • (1998) J Mol Biol , vol.277 , Issue.2 , pp. 467-485
    • Baldwin, E.1    Baase, W.A.2    Zhang, X.J.3    Feher, V.4    Matthews, B.W.5
  • 35
    • 0031893269 scopus 로고    scopus 로고
    • The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect
    • Xu J, Baase WA, Baldwin E, Matthews BW (1998) The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect. Protein Sci 7(1):158-177.
    • (1998) Protein Sci , vol.7 , Issue.1 , pp. 158-177
    • Xu, J.1    Baase, W.A.2    Baldwin, E.3    Matthews, B.W.4
  • 37
    • 84924175906 scopus 로고    scopus 로고
    • Is pressure-induced signal loss in NMR spectra for the Leu99Ala cavity mutant of T4 lysozyme due to unfolding?
    • Kitahara R, Mulder FA (2015) Is pressure-induced signal loss in NMR spectra for the Leu99Ala cavity mutant of T4 lysozyme due to unfolding? Proc Natl Acad Sci USA 112(9):E923.
    • (2015) Proc Natl Acad Sci USA , vol.112 , Issue.9 , pp. E923
    • Kitahara, R.1    Mulder, F.A.2
  • 38
    • 84924117582 scopus 로고    scopus 로고
    • Reply to Kitahara and Mulder: An ensemble view of protein stability best explains pressure effects in a T4 lysozyme cavity mutant
    • Wand AJ, Nucci NV (2015) Reply to Kitahara and Mulder: An ensemble view of protein stability best explains pressure effects in a T4 lysozyme cavity mutant. Proc Natl Acad Sci USA 112(9):E924.
    • (2015) Proc Natl Acad Sci USA , vol.112 , Issue.9 , pp. E924
    • Wand, A.J.1    Nucci, N.V.2
  • 39
    • 79952144525 scopus 로고    scopus 로고
    • High-pressure EPR reveals conformational equilibria and volumetric properties of spin-labeled proteins
    • McCoy J, Hubbell WL (2011) High-pressure EPR reveals conformational equilibria and volumetric properties of spin-labeled proteins. Proc Natl Acad Sci USA 108(4):1331-1336.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.4 , pp. 1331-1336
    • McCoy, J.1    Hubbell, W.L.2
  • 40
    • 84897536162 scopus 로고    scopus 로고
    • Mapping protein conformational heterogeneity under pressure with site-directed spin labeling and double electron-electron resonance
    • Lerch MT, Yang Z, Brooks EK, Hubbell WL (2014) Mapping protein conformational heterogeneity under pressure with site-directed spin labeling and double electron-electron resonance. Proc Natl Acad Sci USA 111(13):E1201-E1210.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.13 , pp. E1201-E1210
    • Lerch, M.T.1    Yang, Z.2    Brooks, E.K.3    Hubbell, W.L.4
  • 41
    • 84865410842 scopus 로고    scopus 로고
    • Mapping molecular flexibility of proteins with site-directed spin labeling: A case study of myoglobin
    • López CJ, Oga S, Hubbell WL (2012) Mapping molecular flexibility of proteins with site-directed spin labeling: A case study of myoglobin. Biochemistry 51(33):6568-6583.
    • (2012) Biochemistry , vol.51 , Issue.33 , pp. 6568-6583
    • López, C.J.1    Oga, S.2    Hubbell, W.L.3
  • 42
    • 2942527068 scopus 로고    scopus 로고
    • Mapping backbone dynamics in solution with site-directed spin labeling: GCN4-58 bZip free and bound to DNA
    • Columbus L, Hubbell WL (2004) Mapping backbone dynamics in solution with site-directed spin labeling: GCN4-58 bZip free and bound to DNA. Biochemistry 43(23):7273-7287.
    • (2004) Biochemistry , vol.43 , Issue.23 , pp. 7273-7287
    • Columbus, L.1    Hubbell, W.L.2
  • 43
    • 65649117362 scopus 로고    scopus 로고
    • Structural origin of weakly ordered nitroxide motion in spin-labeled proteins
    • Fleissner MR, Cascio D, Hubbell WL (2009) Structural origin of weakly ordered nitroxide motion in spin-labeled proteins. Protein Sci 18(5):893-908.
    • (2009) Protein Sci , vol.18 , Issue.5 , pp. 893-908
    • Fleissner, M.R.1    Cascio, D.2    Hubbell, W.L.3
  • 44
    • 0029905422 scopus 로고    scopus 로고
    • Motion of spin-labeled side chains in T4 lysozyme. Correlation with protein structure and dynamics
    • Mchaourab HS, Lietzow MA, Hideg K, Hubbell WL (1996) Motion of spin-labeled side chains in T4 lysozyme. Correlation with protein structure and dynamics. Biochemistry 35(24):7692-7704.
    • (1996) Biochemistry , vol.35 , Issue.24 , pp. 7692-7704
    • Mchaourab, H.S.1    Lietzow, M.A.2    Hideg, K.3    Hubbell, W.L.4
  • 46
    • 71149088976 scopus 로고    scopus 로고
    • Resolving conformational and rotameric exchange in spin-labeled proteins using saturation recovery EPR
    • Bridges MD, Hideg K, Hubbell WL (2010) Resolving conformational and rotameric exchange in spin-labeled proteins using saturation recovery EPR. Appl Magn Reson 37(1-4):363.
    • (2010) Appl Magn Reson , vol.37 , Issue.1-4 , pp. 363
    • Bridges, M.D.1    Hideg, K.2    Hubbell, W.L.3
  • 47
    • 1542428959 scopus 로고    scopus 로고
    • Motion of spin label side chains in cellular retinol-binding protein: Correlation with structure and nearest-neighbor interactions in an antiparallel beta-sheet
    • Lietzow MA, Hubbell WL (2004) Motion of spin label side chains in cellular retinol-binding protein: Correlation with structure and nearest-neighbor interactions in an antiparallel beta-sheet. Biochemistry 43(11):3137-3151.
    • (2004) Biochemistry , vol.43 , Issue.11 , pp. 3137-3151
    • Lietzow, M.A.1    Hubbell, W.L.2
  • 48
    • 38649125853 scopus 로고    scopus 로고
    • Structural determinants of nitroxide motion in spin-labeled proteins: Solvent-exposed sites in helix B of T4 lysozyme
    • Guo Z, Cascio D, Hideg K, Hubbell WL (2008) Structural determinants of nitroxide motion in spin-labeled proteins: Solvent-exposed sites in helix B of T4 lysozyme. Protein Sci 17(2):228-239.
    • (2008) Protein Sci , vol.17 , Issue.2 , pp. 228-239
    • Guo, Z.1    Cascio, D.2    Hideg, K.3    Hubbell, W.L.4
  • 49
    • 0026509036 scopus 로고
    • A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene
    • Eriksson AE, Baase WA, Wozniak JA, Matthews BW (1992) A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene. Nature 355(6358):371-373.
    • (1992) Nature , vol.355 , Issue.6358 , pp. 371-373
    • Eriksson, A.E.1    Baase, W.A.2    Wozniak, J.A.3    Matthews, B.W.4
  • 50
    • 0029016268 scopus 로고
    • Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme
    • Morton A, Baase WA, Matthews BW (1995) Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme. Biochemistry 34(27):8564-8575.
    • (1995) Biochemistry , vol.34 , Issue.27 , pp. 8564-8575
    • Morton, A.1    Baase, W.A.2    Matthews, B.W.3
  • 51
    • 0029882583 scopus 로고    scopus 로고
    • Access of ligands to cavities within the core of a protein is rapid
    • Feher VA, Baldwin EP, Dahlquist FW (1996) Access of ligands to cavities within the core of a protein is rapid. Nat Struct Biol 3(6):516-521.
    • (1996) Nat Struct Biol , vol.3 , Issue.6 , pp. 516-521
    • Feher, V.A.1    Baldwin, E.P.2    Dahlquist, F.W.3
  • 52
    • 84870222249 scopus 로고    scopus 로고
    • Remodeling of the folding free energy landscape of staphylococcal nuclease by cavity-creating mutations
    • Roche J, et al. (2012) Remodeling of the folding free energy landscape of staphylococcal nuclease by cavity-creating mutations. Biochemistry 51(47):9535-9546.
    • (2012) Biochemistry , vol.51 , Issue.47 , pp. 9535-9546
    • Roche, J.1
  • 53
    • 84867743873 scopus 로고    scopus 로고
    • High-pressure macromolecular crystallography and NMR: Status, achievements and prospects
    • Fourme R, Girard E, Akasaka K (2012) High-pressure macromolecular crystallography and NMR: Status, achievements and prospects. Curr Opin Struct Biol 22(5):636-642.
    • (2012) Curr Opin Struct Biol , vol.22 , Issue.5 , pp. 636-642
    • Fourme, R.1    Girard, E.2    Akasaka, K.3
  • 54
    • 84907481670 scopus 로고    scopus 로고
    • CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
    • Kozlikova B, et al. (2014) CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinformatics 30(18):2684-2685.
    • (2014) Bioinformatics , vol.30 , Issue.18 , pp. 2684-2685
    • Kozlikova, B.1
  • 55
    • 84868156224 scopus 로고    scopus 로고
    • CAVER 3.0: A tool for the analysis of transport pathways in dynamic protein structures
    • Chovancova E, et al. (2012) CAVER 3.0: A tool for the analysis of transport pathways in dynamic protein structures. PLOS Comput Biol 8(10):e1002708.
    • (2012) PLOS Comput Biol , vol.8 , Issue.10 , pp. e1002708
    • Chovancova, E.1
  • 56
    • 79955482563 scopus 로고    scopus 로고
    • Determination of the volume changes induced by ligand binding to heat shock protein 90 using high-pressure denaturation
    • Toleikis Z, Cimmperman P, Petrauskas V, Matulis D (2011) Determination of the volume changes induced by ligand binding to heat shock protein 90 using high-pressure denaturation. Anal Biochem 413(2):171-178.
    • (2011) Anal Biochem , vol.413 , Issue.2 , pp. 171-178
    • Toleikis, Z.1    Cimmperman, P.2    Petrauskas, V.3    Matulis, D.4
  • 57
    • 84861182316 scopus 로고    scopus 로고
    • Serum albumin ligand binding volumes using high pressure denaturation
    • 0
    • Toleikis Z, Cimmperman P, Petrauskas V, Matulis D (2012) Serum albumin ligand binding volumes using high pressure denaturation. J Chem Thermodyn 52(0):24-29.
    • (2012) J Chem Thermodyn , vol.52 , pp. 24-29
    • Toleikis, Z.1    Cimmperman, P.2    Petrauskas, V.3    Matulis, D.4
  • 58
    • 0027180821 scopus 로고
    • Effects of amino acid substitutions on the pressure denaturation of staphylococcal nuclease as monitored by fluorescence and nuclear magnetic resonance spectroscopy
    • Royer CA, et al. (1993) Effects of amino acid substitutions on the pressure denaturation of staphylococcal nuclease as monitored by fluorescence and nuclear magnetic resonance spectroscopy. Biochemistry 32(19):5222-5232.
    • (1993) Biochemistry , vol.32 , Issue.19 , pp. 5222-5232
    • Royer, C.A.1
  • 59
    • 77951596391 scopus 로고    scopus 로고
    • Multifrequency electron spin resonance study of the dynamics of spin labeled T4 lysozyme
    • Zhang Z, et al. (2010) Multifrequency electron spin resonance study of the dynamics of spin labeled T4 lysozyme. J Phys Chem B 114(16):5503-5521.
    • (2010) J Phys Chem B , vol.114 , Issue.16 , pp. 5503-5521
    • Zhang, Z.1
  • 60
    • 67749124074 scopus 로고    scopus 로고
    • Osmolyte perturbation reveals conformational equilibria in spin-labeled proteins
    • López CJ, Fleissner MR, Guo Z, Kusnetzow AK, Hubbell WL (2009) Osmolyte perturbation reveals conformational equilibria in spin-labeled proteins. Protein Sci 18(8):1637-1652.
    • (2009) Protein Sci , vol.18 , Issue.8 , pp. 1637-1652
    • López, C.J.1    Fleissner, M.R.2    Guo, Z.3    Kusnetzow, A.K.4    Hubbell, W.L.5
  • 61
    • 84859888767 scopus 로고    scopus 로고
    • DEER distance measurements on proteins
    • Jeschke G (2012) DEER distance measurements on proteins. Annu Rev Phys Chem 63:419-446.
    • (2012) Annu Rev Phys Chem , vol.63 , pp. 419-446
    • Jeschke, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.