-
1
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
Abascal, F., Zardoya, R. and Posada, D. (2005). ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21, 2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
34247555848
-
An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences
-
Aime, M. C., Matheny, P. B., Henk, D. A., Frieders, E. M., Nilsson, R. H., Piepenbring, M., McLaughlin, D. J., Szabo, L. J., Begerow, D., Sampaio, J. P. et al. (2006). An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences. Mycologia 98, 896-905.
-
(2006)
Mycologia
, vol.98
, pp. 896-905
-
-
Aime, M.C.1
Matheny, P.B.2
Henk, D.A.3
Frieders, E.M.4
Nilsson, R.H.5
Piepenbring, M.6
McLaughlin, D.J.7
Szabo, L.J.8
Begerow, D.9
Sampaio, J.P.10
-
3
-
-
0037343124
-
Peroxisome biogenesis occurs in an unsynchronized manner in close association with the endoplasmic reticulum in temperature-sensitive Yarrowia lipolytica Pex3p mutants
-
Bascom, R. A., Chan, H. and Rachubinski, R. A. (2003). Peroxisome biogenesis occurs in an unsynchronized manner in close association with the endoplasmic reticulum in temperature-sensitive Yarrowia lipolytica Pex3p mutants. Mol. Biol. Cell 14, 939-957.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 939-957
-
-
Bascom, R.A.1
Chan, H.2
Rachubinski, R.A.3
-
4
-
-
77954787758
-
A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species
-
S3
-
Boehm, E. W. A., Mugambi, G. K., Miller, A. N., Huhndorf, S. M., Marincowitz, S., Spatafora, J. W. and Schoch, C. L. (2009). A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species. Stud. Mycol. 64, 49-83, S3.
-
(2009)
Stud. Mycol.
, vol.64
, pp. 49-83
-
-
Boehm, E.W.A.1
Mugambi, G.K.2
Miller, A.N.3
Huhndorf, S.M.4
Marincowitz, S.5
Spatafora, J.W.6
Schoch, C.L.7
-
5
-
-
25844471721
-
The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species
-
Byrne, K. P. and Wolfe, K. H. (2005). The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res. 15, 1456-1461.
-
(2005)
Genome Res.
, vol.15
, pp. 1456-1461
-
-
Byrne, K.P.1
Wolfe, K.H.2
-
6
-
-
70449733045
-
Pex3 peroxisome biogenesis proteins function in peroxisome inheritance as class V myosin receptors
-
Chang, J., Mast, F. D., Fagarasanu, A., Rachubinski, D. A., Eitzen, G. A., Dacks, J. B. and Rachubinski, R. A. (2009). Pex3 peroxisome biogenesis proteins function in peroxisome inheritance as class V myosin receptors. J. Cell Biol. 187, 233-246.
-
(2009)
J. Cell Biol.
, vol.187
, pp. 233-246
-
-
Chang, J.1
Mast, F.D.2
Fagarasanu, A.3
Rachubinski, D.A.4
Eitzen, G.A.5
Dacks, J.B.6
Rachubinski, R.A.7
-
7
-
-
84885467052
-
Dynein light chain interaction with the peroxisomal import docking complex modulates peroxisome biogenesis in yeast
-
Chang, J., Tower, R. J., Lancaster, D. L. and Rachubinski, R. A. (2013). Dynein light chain interaction with the peroxisomal import docking complex modulates peroxisome biogenesis in yeast. J. Cell Sci. 126, 4698-4706.
-
(2013)
J. Cell Sci.
, vol.126
, pp. 4698-4706
-
-
Chang, J.1
Tower, R.J.2
Lancaster, D.L.3
Rachubinski, R.A.4
-
8
-
-
0036667448
-
A PCR-based strategy to generate integrative targeting alleles with large regions of homology
-
Davidson, R. C., Blankenship, J. R., Kraus, P. R., de Jesus Berrios, M., Hull, C. M., D'Souza, C., Wang, P. and Heitman, J. (2002). A PCR-based strategy to generate integrative targeting alleles with large regions of homology. Microbiology 148, 2607-2615.
-
(2002)
Microbiology
, vol.148
, pp. 2607-2615
-
-
Davidson, R.C.1
Blankenship, J.R.2
Kraus, P.R.3
de Jesus Berrios, M.4
Hull, C.M.5
D'Souza, C.6
Wang, P.7
Heitman, J.8
-
9
-
-
6444228418
-
Contribution of microscopy to a better knowledge of the biology of Giardia lamblia
-
de Souza, W., Lanfredi-Rangel, A. and Campanati, L. (2004). Contribution of microscopy to a better knowledge of the biology of Giardia lamblia. Microsc. Microanal. 10, 513-527.
-
(2004)
Microsc. Microanal.
, vol.10
, pp. 513-527
-
-
de Souza, W.1
Lanfredi-Rangel, A.2
Campanati, L.3
-
10
-
-
0033890199
-
Toxoplasma gondii catalase: are there peroxisomes in toxoplasma?
-
Ding, M., Clayton, C. and Soldati, D. (2000). Toxoplasma gondii catalase: are there peroxisomes in toxoplasma? J. Cell Sci. 113, 2409-2419.
-
(2000)
J. Cell Sci.
, vol.113
, pp. 2409-2419
-
-
Ding, M.1
Clayton, C.2
Soldati, D.3
-
11
-
-
84864035725
-
A novel defect of peroxisome division due to a homozygous non-sense mutation in the PEX11ß gene
-
Ebberink, M. S., Koster, J., Visser, G., Spronsen, F., Stolte-Dijkstra, I., Smit, G. P. A., Fock, J. M., Kemp, S., Wanders, R. J. A. and Waterham, H. R. (2012). A novel defect of peroxisome division due to a homozygous non-sense mutation in the PEX11ß gene. J. Med. Genet. 49, 307-313.
-
(2012)
J. Med. Genet.
, vol.49
, pp. 307-313
-
-
Ebberink, M.S.1
Koster, J.2
Visser, G.3
Spronsen, F.4
Stolte-Dijkstra, I.5
Smit, G.P.A.6
Fock, J.M.7
Kemp, S.8
Wanders, R.J.A.9
Waterham, H.R.10
-
12
-
-
84857556426
-
A consistent phylogenetic backbone for the fungi
-
Ebersberger, I., de Matos Simoes, R., Kupczok, A., Gube, M., Kothe, E., Voigt, K. and von Haeseler, A. (2012). A consistent phylogenetic backbone for the fungi. Mol. Biol. Evol. 29, 1319-1334.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1319-1334
-
-
Ebersberger, I.1
de Matos Simoes, R.2
Kupczok, A.3
Gube, M.4
Kothe, E.5
Voigt, K.6
von Haeseler, A.7
-
13
-
-
0031743421
-
Profile hidden Markov models
-
Eddy, S. R. (1998). Profile hidden Markov models. Bioinformatics 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
14
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy, S. R. (2009). A new generation of homology search tools based on probabilistic inference. Genome Inform. 23, 205-211.
-
(2009)
Genome Inform.
, vol.23
, pp. 205-211
-
-
Eddy, S.R.1
-
15
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
16
-
-
0029833897
-
The Yarrowia lipolytica gene PAY5 encodes a peroxisomal integral membrane protein homologous to the mammalian peroxisome assembly factor PAF-1
-
Eitzen, G. A., Titorenko, V. I., Smith, J. J., Veenhuis, M., Szilard, R. K. and Rachubinski, R. A. (1996). The Yarrowia lipolytica gene PAY5 encodes a peroxisomal integral membrane protein homologous to the mammalian peroxisome assembly factor PAF-1. J. Biol. Chem. 271, 20300-20306.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 20300-20306
-
-
Eitzen, G.A.1
Titorenko, V.I.2
Smith, J.J.3
Veenhuis, M.4
Szilard, R.K.5
Rachubinski, R.A.6
-
17
-
-
0031007808
-
Enlarged peroxisomes are present in oleic acid-grown Yarrowia lipolytica overexpressing the PEX16 gene encoding an intraperoxisomal peripheral membrane peroxin
-
Eitzen, G. A., Szilard, R. K. and Rachubinski, R. A. (1997). Enlarged peroxisomes are present in oleic acid-grown Yarrowia lipolytica overexpressing the PEX16 gene encoding an intraperoxisomal peripheral membrane peroxin. J. Cell Biol. 137, 1265-1278.
-
(1997)
J. Cell Biol.
, vol.137
, pp. 1265-1278
-
-
Eitzen, G.A.1
Szilard, R.K.2
Rachubinski, R.A.3
-
18
-
-
0028859252
-
Giant peroxisomes in oleic acid-induced Saccharomyces cerevisiae lacking the peroxisomal membrane protein Pmp27p
-
Erdmann, R. and Blobel, G. (1995). Giant peroxisomes in oleic acid-induced Saccharomyces cerevisiae lacking the peroxisomal membrane protein Pmp27p. J. Cell Biol. 128, 509-523.
-
(1995)
J. Cell Biol.
, vol.128
, pp. 509-523
-
-
Erdmann, R.1
Blobel, G.2
-
19
-
-
84866269363
-
An inventory of peroxisomal proteins and pathways in Drosophila melanogaster
-
Faust, J. E., Verma, A., Peng, C. and McNew, J. A. (2012). An inventory of peroxisomal proteins and pathways in Drosophila melanogaster. Traffic 13, 1378-1392.
-
(2012)
Traffic
, vol.13
, pp. 1378-1392
-
-
Faust, J.E.1
Verma, A.2
Peng, C.3
McNew, J.A.4
-
20
-
-
77349092837
-
Peroxisome diversity and evolution
-
Gabaldón, T. (2010). Peroxisome diversity and evolution. Philos. Trans. R. Soc. B 365,765-773.
-
(2010)
Philos. Trans. R. Soc. B
, vol.365
, pp. 765-773
-
-
Gabaldón, T.1
-
21
-
-
33747893546
-
Origin and evolution of the peroxisomal proteome
-
Gabaldón, T., Snel, B., van Zimmeren, F., Hemrika, W., Tabak, H. and Huynen, M. A. (2006). Origin and evolution of the peroxisomal proteome. Biol. Direct 1, 8.
-
(2006)
Biol. Direct
, vol.1
, pp. 8
-
-
Gabaldón, T.1
Snel, B.2
van Zimmeren, F.3
Hemrika, W.4
Tabak, H.5
Huynen, M.A.6
-
22
-
-
84855192934
-
When, how and why glycolysis became compartmentalised in the Kinetoplastea. A new look at an ancient organelle
-
Gualdrón-López, M., Brennand, A., Hannaert, V., Quiñones, W., Cáceres, A. J., Bringaud, F., Concepción, J. L. and Michels, P. A. M. (2012). When, how and why glycolysis became compartmentalised in the Kinetoplastea. A new look at an ancient organelle. Int. J. Parasitol. 42, 1-20.
-
(2012)
Int. J. Parasitol.
, vol.42
, pp. 1-20
-
-
Gualdrón-López, M.1
Brennand, A.2
Hannaert, V.3
Quiñones, W.4
Cáceres, A.J.5
Bringaud, F.6
Concepción, J.L.7
Michels, P.A.M.8
-
23
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S. and Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704.
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
24
-
-
0034574725
-
Functional transformation of plant peroxisomes
-
Hayashi, M., Toriyama, K., Kondo, M., Kato, A., Mano, S., De Bellis, L., Hayashi-Ishimaru, Y., Yamaguchi, K., Hayashi, H. and Nishimura, M. (2000). Functional transformation of plant peroxisomes. Cell Biochem. Biophys. 32, 295-304.
-
(2000)
Cell Biochem. Biophys.
, vol.32
, pp. 295-304
-
-
Hayashi, M.1
Toriyama, K.2
Kondo, M.3
Kato, A.4
Mano, S.5
De Bellis, L.6
Hayashi-Ishimaru, Y.7
Yamaguchi, K.8
Hayashi, H.9
Nishimura, M.10
-
25
-
-
34247647914
-
A phylogenetic overview of the Agaricomycotina
-
Hibbett, D. S. (2006). A phylogenetic overview of the Agaricomycotina. Mycologia 98, 917-925.
-
(2006)
Mycologia
, vol.98
, pp. 917-925
-
-
Hibbett, D.S.1
-
26
-
-
33750329972
-
Reconstructing the early evolution of Fungi using a six-gene phylogeny
-
James, T. Y., Kauff, F., Schoch, C. L., Matheny, P. B., Hofstetter, V., Cox, C. J., Celio, G., Gueidan, C., Fraker, E., Miadlikowska, J. et al. (2006). Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature 443, 818-822.
-
(2006)
Nature
, vol.443
, pp. 818-822
-
-
James, T.Y.1
Kauff, F.2
Schoch, C.L.3
Matheny, P.B.4
Hofstetter, V.5
Cox, C.J.6
Celio, G.7
Gueidan, C.8
Fraker, E.9
Miadlikowska, J.10
-
27
-
-
0035179011
-
External alternative NADH:ubiquinone oxidoreductase redirected to the internal face of the mitochondrial inner membrane rescues complex I deficiency in Yarrowia lipolytica
-
Kerscher, S. J., Eschemann, A., Okun, P. M. and Brandt, U. (2001). External alternative NADH:ubiquinone oxidoreductase redirected to the internal face of the mitochondrial inner membrane rescues complex I deficiency in Yarrowia lipolytica. J. Cell Sci. 114, 3915-3921.
-
(2001)
J. Cell Sci.
, vol.114
, pp. 3915-3921
-
-
Kerscher, S.J.1
Eschemann, A.2
Okun, P.M.3
Brandt, U.4
-
28
-
-
33748565936
-
PEX genes in fungal genomes: common, rare or redundant
-
Kiel, J. A. K. W., Veenhuis, M. and van der Klei, I. J. (2006). PEX genes in fungal genomes: common, rare or redundant. Traffic 7, 1291-1303.
-
(2006)
Traffic
, vol.7
, pp. 1291-1303
-
-
Kiel, J.A.K.W.1
Veenhuis, M.2
van der Klei, I.J.3
-
29
-
-
77955986557
-
PEX11 family members are membrane elongation factors that coordinate peroxisome proliferation and maintenance
-
Koch, J., Pranjic, K., Huber, A., Ellinger, A., Hartig, A., Kragler, F. and Brocard, C. (2010). PEX11 family members are membrane elongation factors that coordinate peroxisome proliferation and maintenance. J. Cell Sci. 123, 3389-3400.
-
(2010)
J. Cell Sci.
, vol.123
, pp. 3389-3400
-
-
Koch, J.1
Pranjic, K.2
Huber, A.3
Ellinger, A.4
Hartig, A.5
Kragler, F.6
Brocard, C.7
-
30
-
-
0035196588
-
Yarrowia lipolytica cells mutant for the peroxisomal peroxin Pex19p contain structures resembling wild-type peroxisomes
-
Lambkin, G. R. and Rachubinski, R. A. (2001). Yarrowia lipolytica cells mutant for the peroxisomal peroxin Pex19p contain structures resembling wild-type peroxisomes. Mol. Biol. Cell 12, 3353-3364.
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 3353-3364
-
-
Lambkin, G.R.1
Rachubinski, R.A.2
-
31
-
-
0033537759
-
The Pex16p homolog SSE1 and storage organelle formation in Arabidopsis seeds
-
Lin, Y., Sun, L., Nguyen, L. V., Rachubinski, R. A. and Goodman, H. M. (1999). The Pex16p homolog SSE1 and storage organelle formation in Arabidopsis seeds. Science 284, 328-330.
-
(1999)
Science
, vol.284
, pp. 328-330
-
-
Lin, Y.1
Sun, L.2
Nguyen, L.V.3
Rachubinski, R.A.4
Goodman, H.M.5
-
32
-
-
33744519174
-
Five Arabidopsis peroxin 11 homologs individually promote peroxisome elongation, duplication or aggregation
-
Lingard, M. J. and Trelease, R. N. (2006). Five Arabidopsis peroxin 11 homologs individually promote peroxisome elongation, duplication or aggregation. J. Cell Sci. 119, 1961-1972.
-
(2006)
J. Cell Sci.
, vol.119
, pp. 1961-1972
-
-
Lingard, M.J.1
Trelease, R.N.2
-
33
-
-
38749103478
-
Making two organelles from one: Woronin body biogenesis by peroxisomal protein sorting
-
Liu, F., Ng, S. K., Lu, Y., Low, W., Lai, J. and Jedd, G. (2008). Making two organelles from one: Woronin body biogenesis by peroxisomal protein sorting. J. Cell Biol. 180, 325-339.
-
(2008)
J. Cell Biol.
, vol.180
, pp. 325-339
-
-
Liu, F.1
Ng, S.K.2
Lu, Y.3
Low, W.4
Lai, J.5
Jedd, G.6
-
34
-
-
0035062359
-
An essential dimeric membrane protein of trypanosome glycosomes
-
Maier, A., Lorenz, P., Voncken, F. and Clayton, C. (2001). An essential dimeric membrane protein of trypanosome glycosomes. Mol. Microbiol. 39, 1443-1451.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 1443-1451
-
-
Maier, A.1
Lorenz, P.2
Voncken, F.3
Clayton, C.4
-
35
-
-
78149407181
-
Identification of PEX33, a novel component of the peroxisomal docking complex in the filamentous fungus Neurospora crassa
-
Managadze, D., Würtz, C., Wiese, S., Schneider, M., Girzalsky, W., Meyer, H. E., Erdmann, R., Warscheid, B. and Rottensteiner, H. (2010). Identification of PEX33, a novel component of the peroxisomal docking complex in the filamentous fungus Neurospora crassa. Eur. J. Cell Biol. 89, 955-964.
-
(2010)
Eur. J. Cell Biol.
, vol.89
, pp. 955-964
-
-
Managadze, D.1
Würtz, C.2
Wiese, S.3
Schneider, M.4
Girzalsky, W.5
Meyer, H.E.6
Erdmann, R.7
Warscheid, B.8
Rottensteiner, H.9
-
36
-
-
0028907434
-
Pmp27 promotes peroxisomal proliferation
-
Marshall, P. A., Krimkevich, Y. I., Lark, R. H., Dyer, J. M., Veenhuis, M. and Goodman, J. M. (1995). Pmp27 promotes peroxisomal proliferation. J. Cell Biol. 129,345-355.
-
(1995)
J. Cell Biol.
, vol.129
, pp. 345-355
-
-
Marshall, P.A.1
Krimkevich, Y.I.2
Lark, R.H.3
Dyer, J.M.4
Veenhuis, M.5
Goodman, J.M.6
-
37
-
-
80052301114
-
A Drosophila model for the Zellweger spectrum of peroxisome biogenesis disorders
-
Mast, F. D., Li, J., Virk, M. K., Hughes, S. C., Simmonds, A. J. and Rachubinski, R. A. (2011). A Drosophila model for the Zellweger spectrum of peroxisome biogenesis disorders. Dis. Model. Mech. 4, 659-672.
-
(2011)
Dis. Model. Mech.
, vol.4
, pp. 659-672
-
-
Mast, F.D.1
Li, J.2
Virk, M.K.3
Hughes, S.C.4
Simmonds, A.J.5
Rachubinski, R.A.6
-
38
-
-
84857227906
-
Emergent complexity in Myosin V-based organelle inheritance
-
Mast, F. D., Rachubinski, R. A. and Dacks, J. B. (2012). Emergent complexity in Myosin V-based organelle inheritance. Mol. Biol. Evol. 29, 975-984.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 975-984
-
-
Mast, F.D.1
Rachubinski, R.A.2
Dacks, J.B.3
-
39
-
-
84856350965
-
Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom
-
Medina, E. M., Jones, G. W. and Fitzpatrick, D. A. (2011). Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom. J. Mol. Evol. 73, 116-133.
-
(2011)
J. Mol. Evol.
, vol.73
, pp. 116-133
-
-
Medina, E.M.1
Jones, G.W.2
Fitzpatrick, D.A.3
-
40
-
-
33845323726
-
Metabolic functions of glycosomes in trypanosomatids
-
Michels, P. A. M., Bringaud, F., Herman, M. and Hannaert, V. (2006). Metabolic functions of glycosomes in trypanosomatids. Biochim. Biophys. Acta 1763, 1463-1477.
-
(2006)
Biochim. Biophys. Acta
, vol.1763
, pp. 1463-1477
-
-
Michels, P.A.M.1
Bringaud, F.2
Herman, M.3
Hannaert, V.4
-
41
-
-
34547595860
-
Yeast peroxisomes multiply by growth and division
-
Motley, A. M. and Hettema, E. H. (2007). Yeast peroxisomes multiply by growth and division. J. Cell Biol. 178, 399-410.
-
(2007)
J. Cell Biol.
, vol.178
, pp. 399-410
-
-
Motley, A.M.1
Hettema, E.H.2
-
42
-
-
40749089218
-
Comprehensive sequence and expression profile analysis of PEX11 gene family in rice
-
Nayidu, N. K., Wang, L., Xie, W., Zhang, C., Fan, C., Lian, X., Zhang, Q. and Xiong, L. (2008). Comprehensive sequence and expression profile analysis of PEX11 gene family in rice. Gene 412, 59-70.
-
(2008)
Gene
, vol.412
, pp. 59-70
-
-
Nayidu, N.K.1
Wang, L.2
Xie, W.3
Zhang, C.4
Fan, C.5
Lian, X.6
Zhang, Q.7
Xiong, L.8
-
43
-
-
0027208064
-
Rapid identification and characterization of peroxisomal assembly mutants in Yarrowia lipolytica
-
Nuttley, W. M., Brade, A. M., Gaillardin, C., Eitzen, G. A., Glover, J. R., Aitchison, J. D. and Rachubinski, R. A. (1993). Rapid identification and characterization of peroxisomal assembly mutants in Yarrowia lipolytica. Yeast 9, 507-517.
-
(1993)
Yeast
, vol.9
, pp. 507-517
-
-
Nuttley, W.M.1
Brade, A.M.2
Gaillardin, C.3
Eitzen, G.A.4
Glover, J.R.5
Aitchison, J.D.6
Rachubinski, R.A.7
-
44
-
-
78650856488
-
Membrane curvature during peroxisome fission requires Pex11
-
Opaliński, L., Kiel, J. A. K. W., Williams, C., Veenhuis, M. and van der Klei, I. J. (2011). Membrane curvature during peroxisome fission requires Pex11. EMBO J. 30, 5-16.
-
(2011)
EMBO J.
, vol.30
, pp. 5-16
-
-
Opaliński, L.1
Kiel, J.A.K.W.2
Williams, C.3
Veenhuis, M.4
van der Klei, I.J.5
-
45
-
-
84859811841
-
De novo peroxisome biogenesis in Penicillium chrysogenum is not dependent on the Pex11 family members or Pex16
-
Opaliński, L., Bartoszewska, M., Fekken, S., Liu, H., de Boer, R., van der Kiel, I., Veenhuis, M. and Kiel, J. A. K. W. (2012). De novo peroxisome biogenesis in Penicillium chrysogenum is not dependent on the Pex11 family members or Pex16. PLoS ONE 7, e35490.
-
(2012)
PLoS ONE
, vol.7
-
-
Opaliński, L.1
Bartoszewska, M.2
Fekken, S.3
Liu, H.4
de Boer, R.5
van der Kiel, I.6
Veenhuis, M.7
Kiel, J.A.K.W.8
-
46
-
-
37249063075
-
The Ypt/Rab family and the evolution of trafficking in fungi
-
Pereira-Leal, J. B. (2008). The Ypt/Rab family and the evolution of trafficking in fungi. Traffic 9, 27-38.
-
(2008)
Traffic
, vol.9
, pp. 27-38
-
-
Pereira-Leal, J.B.1
-
47
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist, F. and Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
48
-
-
0141541655
-
Conserved function of pex11p and the novel pex25p and pex27p in peroxisome biogenesis
-
Rottensteiner, H., Stein, K., Sonnenhol, E. and Erdmann, R. (2003). Conserved function of pex11p and the novel pex25p and pex27p in peroxisome biogenesis. Mol. Biol. Cell 14, 4316-4328.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 4316-4328
-
-
Rottensteiner, H.1
Stein, K.2
Sonnenhol, E.3
Erdmann, R.4
-
49
-
-
79959462996
-
Peroxisome reintroduction in Hansenula polymorpha requires Pex25 and Rho1
-
Saraya, R., Krikken, A. M., Veenhuis, M. and van der Klei, I. J. (2011). Peroxisome reintroduction in Hansenula polymorpha requires Pex25 and Rho1. J. Cell Biol. 193, 885-900.
-
(2011)
J. Cell Biol.
, vol.193
, pp. 885-900
-
-
Saraya, R.1
Krikken, A.M.2
Veenhuis, M.3
van der Klei, I.J.4
-
50
-
-
33644907201
-
The evolutionary origin of peroxisomes: an ER-peroxisome connection
-
Schlüter, A., Fourcade, S., Ripp, R., Mandel, J. L., Poch, O. and Pujol, A. (2006). The evolutionary origin of peroxisomes: an ER-peroxisome connection. Mol. Biol. Evol. 23, 838-845.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 838-845
-
-
Schlüter, A.1
Fourcade, S.2
Ripp, R.3
Mandel, J.L.4
Poch, O.5
Pujol, A.6
-
51
-
-
77954765891
-
A class-wide phylogenetic assessment of Dothideomycetes
-
Schoch, C. L., Crous, P. W., Groenewald, J. Z., Boehm, E. W. A., Burgess, T. I., de Gruyter, J., de Hoog, G. S., Dixon, L. J., Grube, M., Gueidan, C. et al. (2009). A class-wide phylogenetic assessment of Dothideomycetes. Stud. Mycol. 64, 1-15, S10.
-
(2009)
Stud. Mycol.
, vol.64
, pp. 1-15+S10
-
-
Schoch, C.L.1
Crous, P.W.2
Groenewald, J.Z.3
Boehm, E.W.A.4
Burgess, T.I.5
de Gruyter, J.6
de Hoog, G.S.7
Dixon, L.J.8
Grube, M.9
Gueidan, C.10
-
52
-
-
84864067919
-
Fission and proliferation of peroxisomes
-
Schrader, M., Bonekamp, N. A. and Islinger, M. (2012). Fission and proliferation of peroxisomes. Biochim. Biophys. Acta 1822, 1343-1357.
-
(2012)
Biochim. Biophys. Acta
, vol.1822
, pp. 1343-1357
-
-
Schrader, M.1
Bonekamp, N.A.2
Islinger, M.3
-
54
-
-
0035846962
-
A role for the peroxin Pex8p in Pex20p-dependent thiolase import into peroxisomes of the yeast Yarrowia lipolytica
-
Smith, J. J. and Rachubinski, R. A. (2001). A role for the peroxin Pex8p in Pex20p-dependent thiolase import into peroxisomes of the yeast Yarrowia lipolytica. J. Biol. Chem. 276, 1618-1625.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 1618-1625
-
-
Smith, J.J.1
Rachubinski, R.A.2
-
55
-
-
19044367930
-
Transcriptome profiling to identify genes involved in peroxisome assembly and function
-
Smith, J. J., Marelli, M., Christmas, R. H., Vizeacoumar, F. J., Dilworth, D. J., Ideker, T., Galitski, T., Dimitrov, K., Rachubinski, R. A. and Aitchison, J. D. (2002). Transcriptome profiling to identify genes involved in peroxisome assembly and function. J. Cell Biol. 158, 259-271.
-
(2002)
J. Cell Biol.
, vol.158
, pp. 259-271
-
-
Smith, J.J.1
Marelli, M.2
Christmas, R.H.3
Vizeacoumar, F.J.4
Dilworth, D.J.5
Ideker, T.6
Galitski, T.7
Dimitrov, K.8
Rachubinski, R.A.9
Aitchison, J.D.10
-
56
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
57
-
-
34247577123
-
Phylogenetics of Saccharomycetales, the ascomycete yeasts
-
Suh, S. O., Blackwell, M., Kurtzman, C. P. and Lachance, M. A. (2006). Phylogenetics of Saccharomycetales, the ascomycete yeasts. Mycologia 98, 1006-1017.
-
(2006)
Mycologia
, vol.98
, pp. 1006-1017
-
-
Suh, S.O.1
Blackwell, M.2
Kurtzman, C.P.3
Lachance, M.A.4
-
58
-
-
84878954796
-
Peroxisome formation and maintenance are dependent on the endoplasmic reticulum
-
Tabak, H. F., Braakman, I. and van der Zand, A. (2013). Peroxisome formation and maintenance are dependent on the endoplasmic reticulum. Annu. Rev. Biochem. 82, 723-744.
-
(2013)
Annu. Rev. Biochem.
, vol.82
, pp. 723-744
-
-
Tabak, H.F.1
Braakman, I.2
van der Zand, A.3
-
59
-
-
0036677434
-
Yarrowia lipolytica cells mutant for the PEX24 gene encoding a peroxisomal membrane peroxin mislocalize peroxisomal proteins and accumulate membrane structures containing both peroxisomal matrix and membrane proteins
-
Tam, Y. Y. C. and Rachubinski, R. A. (2002). Yarrowia lipolytica cells mutant for the PEX24 gene encoding a peroxisomal membrane peroxin mislocalize peroxisomal proteins and accumulate membrane structures containing both peroxisomal matrix and membrane proteins. Mol. Biol. Cell 13, 2681-2691.
-
(2002)
Mol. Biol. Cell
, vol.13
, pp. 2681-2691
-
-
Tam, Y.Y.C.1
Rachubinski, R.A.2
-
60
-
-
0141764783
-
Pex11-related proteins in peroxisome dynamics: a role for the novel peroxin Pex27p in controlling peroxisome size and number in Saccharomyces cerevisiae
-
Tam, Y. Y. C., Torres-Guzman, J. C., Vizeacoumar, F. J., Smith, J. J., Marelli, M., Aitchison, J. D. and Rachubinski, R. A. (2003). Pex11-related proteins in peroxisome dynamics: a role for the novel peroxin Pex27p in controlling peroxisome size and number in Saccharomyces cerevisiae. Mol. Biol. Cell 14, 4089-4102.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 4089-4102
-
-
Tam, Y.Y.C.1
Torres-Guzman, J.C.2
Vizeacoumar, F.J.3
Smith, J.J.4
Marelli, M.5
Aitchison, J.D.6
Rachubinski, R.A.7
-
61
-
-
0031895522
-
Mutants of the yeast Yarrowia lipolytica defective in protein exit from the endoplasmic reticulum are also defective in peroxisome biogenesis
-
Titorenko, V. I. and Rachubinski, R. A. (1998). Mutants of the yeast Yarrowia lipolytica defective in protein exit from the endoplasmic reticulum are also defective in peroxisome biogenesis. Mol. Cell. Biol. 18, 2789-2803.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 2789-2803
-
-
Titorenko, V.I.1
Rachubinski, R.A.2
-
62
-
-
0034698778
-
Peroxisomal membrane fusion requires two AAA family ATPases, Pex1p and Pex6p
-
Titorenko, V. I. and Rachubinski, R. A. (2000). Peroxisomal membrane fusion requires two AAA family ATPases, Pex1p and Pex6p. J. Cell Biol. 150, 881-886.
-
(2000)
J. Cell Biol.
, vol.150
, pp. 881-886
-
-
Titorenko, V.I.1
Rachubinski, R.A.2
-
63
-
-
0034627808
-
Fusion of small peroxisomal vesicles in vitro reconstructs an early step in the in vivo multistep peroxisome assembly pathway of Yarrowia lipolytica
-
Titorenko, V. I., Chan, H. and Rachubinski, R. A. (2000). Fusion of small peroxisomal vesicles in vitro reconstructs an early step in the in vivo multistep peroxisome assembly pathway of Yarrowia lipolytica. J. Cell Biol. 148, 29-44.
-
(2000)
J. Cell Biol.
, vol.148
, pp. 29-44
-
-
Titorenko, V.I.1
Chan, H.2
Rachubinski, R.A.3
-
64
-
-
79955959815
-
The peroxin Pex34p functions with the Pex11 family of peroxisomal divisional proteins to regulate the peroxisome population in yeast
-
Tower, R. J., Fagarasanu, A., Aitchison, J. D. and Rachubinski, R. A. (2011). The peroxin Pex34p functions with the Pex11 family of peroxisomal divisional proteins to regulate the peroxisome population in yeast. Mol. Biol. Cell 22, 1727-1738.
-
(2011)
Mol. Biol. Cell
, vol.22
, pp. 1727-1738
-
-
Tower, R.J.1
Fagarasanu, A.2
Aitchison, J.D.3
Rachubinski, R.A.4
-
65
-
-
84897949889
-
A critical reflection on the principles of peroxisome formation in yeast
-
Veenhuis, M. and van der Klei, I. J. (2014). A critical reflection on the principles of peroxisome formation in yeast. Front. Physiol. 5, 110.
-
(2014)
Front. Physiol.
, vol.5
, pp. 110
-
-
Veenhuis, M.1
van der Klei, I.J.2
-
66
-
-
0038746700
-
YHR150w and YDR479c encode peroxisomal integral membrane proteins involved in the regulation of peroxisome number, size, and distribution in Saccharomyces cerevisiae
-
Vizeacoumar, F. J., Torres-Guzman, J. C., Tam, Y. Y. C., Aitchison, J. D. and Rachubinski, R. A. (2003). YHR150w and YDR479c encode peroxisomal integral membrane proteins involved in the regulation of peroxisome number, size, and distribution in Saccharomyces cerevisiae. J. Cell Biol. 161, 321-332.
-
(2003)
J. Cell Biol.
, vol.161
, pp. 321-332
-
-
Vizeacoumar, F.J.1
Torres-Guzman, J.C.2
Tam, Y.Y.C.3
Aitchison, J.D.4
Rachubinski, R.A.5
-
67
-
-
0041816190
-
Depletion of GIM5 causes cellular fragility, a decreased glycosome number, and reduced levels of ether-linked phospholipids in trypanosomes
-
Voncken, F., van Hellemond, J. J., Pfisterer, I., Maier, A., Hillmer, S. and Clayton, C. (2003). Depletion of GIM5 causes cellular fragility, a decreased glycosome number, and reduced levels of ether-linked phospholipids in trypanosomes. J. Biol. Chem. 278, 35299-35310.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 35299-35310
-
-
Voncken, F.1
van Hellemond, J.J.2
Pfisterer, I.3
Maier, A.4
Hillmer, S.5
Clayton, C.6
-
68
-
-
84856289301
-
Eukaryotic systematics: a user's guide for cell biologists and parasitologists
-
Walker, G., Dorrell, R. G., Schlacht, A. and Dacks, J. B. (2011). Eukaryotic systematics: a user's guide for cell biologists and parasitologists. Parasitology 138, 1638-1663.
-
(2011)
Parasitology
, vol.138
, pp. 1638-1663
-
-
Walker, G.1
Dorrell, R.G.2
Schlacht, A.3
Dacks, J.B.4
-
69
-
-
34548501747
-
Natural history and evolutionary principles of gene duplication in fungi
-
Wapinski, I., Pfeffer, A., Friedman, N. and Regev, A. (2007). Natural history and evolutionary principles of gene duplication in fungi. Nature 449, 54-61.
-
(2007)
Nature
, vol.449
, pp. 54-61
-
-
Wapinski, I.1
Pfeffer, A.2
Friedman, N.3
Regev, A.4
-
70
-
-
84864029381
-
Genetics and molecular basis of human peroxisome biogenesis disorders
-
Waterham, H. R. and Ebberink, M. S. (2012). Genetics and molecular basis of human peroxisome biogenesis disorders. Biochim. Biophys. Acta 1822, 1430-1441.
-
(2012)
Biochim. Biophys. Acta
, vol.1822
, pp. 1430-1441
-
-
Waterham, H.R.1
Ebberink, M.S.2
-
71
-
-
84892432106
-
nhmmer: DNA homology search with profile HMMs
-
Wheeler, T. J. and Eddy, S. R. (2013). nhmmer: DNA homology search with profile HMMs. Bioinformatics 29, 2487-2489.
-
(2013)
Bioinformatics
, vol.29
, pp. 2487-2489
-
-
Wheeler, T.J.1
Eddy, S.R.2
-
72
-
-
84855824416
-
Accounting for alignment uncertainty in phylogenomics
-
Wu, M., Chatterji, S. and Eisen, J. A. (2012). Accounting for alignment uncertainty in phylogenomics. PLoS ONE 7, e30288.
-
(2012)
PLoS ONE
, vol.7
-
-
Wu, M.1
Chatterji, S.2
Eisen, J.A.3
|