-
1
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304(5667):66-74.
-
(2004)
Science
, vol.304
, Issue.5667
, pp. 66-74
-
-
Venter, J.C.1
-
2
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere."
-
Sogin ML, et al. (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere." Proc Natl Acad Sci USA 103(32):12115-12120.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.32
, pp. 12115-12120
-
-
Sogin, M.L.1
-
3
-
-
66149150877
-
Microbial community structure and its functional implications
-
Fuhrman JA (2009) Microbial community structure and its functional implications. Nature 459(7244):193-199.
-
(2009)
Nature
, vol.459
, Issue.7244
, pp. 193-199
-
-
Fuhrman, J.A.1
-
4
-
-
84899559579
-
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
-
Kashtan N, et al. (2014) Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science 344(6182):416-420.
-
(2014)
Science
, vol.344
, Issue.6182
, pp. 416-420
-
-
Kashtan, N.1
-
5
-
-
33748353399
-
Annually reoccurring bacterial communities are predictable from ocean conditions
-
Fuhrman JA, et al. (2006) Annually reoccurring bacterial communities are predictable from ocean conditions. Proc Natl Acad Sci USA 103(35):13104-13109.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.35
, pp. 13104-13109
-
-
Fuhrman, J.A.1
-
6
-
-
38149140067
-
Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes
-
Zwirglmaier K, et al. (2008) Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes. Environ Microbiol 10(1):147-161.
-
(2008)
Environ Microbiol
, vol.10
, Issue.1
, pp. 147-161
-
-
Zwirglmaier, K.1
-
7
-
-
77957000882
-
Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
-
Malmstrom RR, et al. (2010) Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. ISME J 4(10):1252-1264.
-
(2010)
ISME J
, vol.4
, Issue.10
, pp. 1252-1264
-
-
Malmstrom, R.R.1
-
8
-
-
0024475207
-
High abundance of viruses found in aquatic environments
-
Bergh O, Børsheim KY, Bratbak G, Heldal M (1989) High abundance of viruses found in aquatic environments. Nature 340(6233):467-468.
-
(1989)
Nature
, vol.340
, Issue.6233
, pp. 467-468
-
-
Bergh, O.1
Børsheim, K.Y.2
Bratbak, G.3
Heldal, M.4
-
9
-
-
0025198355
-
Viral mortality of marine bacteria and cyanobacteria
-
Proctor LM, Fuhrman JA (1990) Viral mortality of marine bacteria and cyanobacteria. Nature 343(6253):60-62.
-
(1990)
Nature
, vol.343
, Issue.6253
, pp. 60-62
-
-
Proctor, L.M.1
Fuhrman, J.A.2
-
10
-
-
34548792911
-
Marine viruses - Major players in the global ecosystem
-
Suttle CA (2007) Marine viruses - major players in the global ecosystem. Nat Rev Microbiol 5(10):801-812.
-
(2007)
Nat Rev Microbiol
, vol.5
, Issue.10
, pp. 801-812
-
-
Suttle, C.A.1
-
11
-
-
83655191021
-
Marine viruses: Truth or dare
-
Breitbart M (2012) Marine viruses: Truth or dare. Annu Rev Mar Sci 4(1):425-448.
-
(2012)
Annu Rev Mar Sci
, vol.4
, Issue.1
, pp. 425-448
-
-
Breitbart, M.1
-
12
-
-
0027329223
-
Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophages abundant in seawater
-
Waterbury JB, Valois FW (1993) Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophages abundant in seawater. Appl Environ Microbiol 59(10):3393-3399.
-
(1993)
Appl Environ Microbiol
, vol.59
, Issue.10
, pp. 3393-3399
-
-
Waterbury, J.B.1
Valois, F.W.2
-
13
-
-
68249096294
-
Bacteriophages drive strain diversification in a marine Flavobacterium: Implications for phage resistance and physiological properties
-
Middelboe M, Holmfeldt K, Riemann L, Nybroe O, Haaber J (2009) Bacteriophages drive strain diversification in a marine Flavobacterium: Implications for phage resistance and physiological properties. Environ Microbiol 11(8):1971-1982.
-
(2009)
Environ Microbiol
, vol.11
, Issue.8
, pp. 1971-1982
-
-
Middelboe, M.1
Holmfeldt, K.2
Riemann, L.3
Nybroe, O.4
Haaber, J.5
-
14
-
-
79959842126
-
Genomic island variability facilitates Prochlorococcus-virus coexistence
-
Avrani S, Wurtzel O, Sharon I, Sorek R, Lindell D (2011) Genomic island variability facilitates Prochlorococcus-virus coexistence. Nature 474(7353):604-608.
-
(2011)
Nature
, vol.474
, Issue.7353
, pp. 604-608
-
-
Avrani, S.1
Wurtzel, O.2
Sharon, I.3
Sorek, R.4
Lindell, D.5
-
15
-
-
84858690397
-
Rapid diversification of coevolving marine Synechococcus and a virus
-
Marston MF, et al. (2012) Rapid diversification of coevolving marine Synechococcus and a virus. Proc Natl Acad Sci USA 109(12):4544-4549.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.12
, pp. 4544-4549
-
-
Marston, M.F.1
-
17
-
-
0036421560
-
Trade-offs and coexistence in microbial microcosms
-
Bohannan BM, Kerr B, Jessup C, Hughes J, Sandvik G (2002) Trade-offs and coexistence in microbial microcosms. A Van Leeuw J Microb 81(1-4):107-115.
-
(2002)
A Van Leeuw J Microb
, vol.81
, Issue.1-4
, pp. 107-115
-
-
Bohannan, B.M.1
Kerr, B.2
Jessup, C.3
Hughes, J.4
Sandvik, G.5
-
18
-
-
0037398083
-
Mechanisms of coexistence of a bacteria and a bacteriophage in a spatially homogeneous environment
-
Lythgoe KA, Chao L (2003) Mechanisms of coexistence of a bacteria and a bacteriophage in a spatially homogeneous environment. Ecol Lett 6(4):326-334.
-
(2003)
Ecol Lett
, vol.6
, Issue.4
, pp. 326-334
-
-
Lythgoe, K.A.1
Chao, L.2
-
19
-
-
33645024674
-
Spatial heterogeneity and the stability of host-parasite coexistence
-
Brockhurst MA, Buckling A, Rainey PB (2006) Spatial heterogeneity and the stability of host-parasite coexistence. J Evol Biol 19(2):374-379.
-
(2006)
J Evol Biol
, vol.19
, Issue.2
, pp. 374-379
-
-
Brockhurst, M.A.1
Buckling, A.2
Rainey, P.B.3
-
20
-
-
84878141242
-
Mechanisms of multi-strain coexistence in hostphage systems with nested infection networks
-
0
-
Jover LF, Cortez MH, Weitz JS (2013) Mechanisms of multi-strain coexistence in hostphage systems with nested infection networks. J Theor Biol 332(0):65-77.
-
(2013)
J Theor Biol
, vol.332
, pp. 65-77
-
-
Jover, L.F.1
Cortez, M.H.2
Weitz, J.S.3
-
22
-
-
78650045540
-
The phage-host arms race: Shaping the evolution of microbes
-
Stern A, Sorek R (2011) The phage-host arms race: Shaping the evolution of microbes. BioEssays 33(1):43-51.
-
(2011)
BioEssays
, vol.33
, Issue.1
, pp. 43-51
-
-
Stern, A.1
Sorek, R.2
-
23
-
-
84884286187
-
Revenge of the phages: Defeating bacterial defences
-
Samson JE, Magadán AH, Sabri M, Moineau S (2013) Revenge of the phages: Defeating bacterial defences. Nat Rev Microbiol 11(10):675-687.
-
(2013)
Nat Rev Microbiol
, vol.11
, Issue.10
, pp. 675-687
-
-
Samson, J.E.1
Magadán, A.H.2
Sabri, M.3
Moineau, S.4
-
24
-
-
0001333091
-
A complex community in a simple habitat: An experimental study with bacteria and phage
-
Chao L, Levin BR, Stewart FM (1977) A complex community in a simple habitat: An experimental study with bacteria and phage. Ecology 58(2):369-378.
-
(1977)
Ecology
, vol.58
, Issue.2
, pp. 369-378
-
-
Chao, L.1
Levin, B.R.2
Stewart, F.M.3
-
25
-
-
0033878587
-
Linking genetic change to community evolution: Insights from studies of bacteria and bacteriophage
-
Bohannan BJM, Lenski RE (2000) Linking genetic change to community evolution: Insights from studies of bacteria and bacteriophage. Ecol Lett 3(4):362-377.
-
(2000)
Ecol Lett
, vol.3
, Issue.4
, pp. 362-377
-
-
Bohannan, B.J.M.1
Lenski, R.E.2
-
26
-
-
0033784827
-
Bacterial growth rate and marine virus-host dynamics
-
Middelboe M (2000) Bacterial growth rate and marine virus-host dynamics. Microb Ecol 40(2):114-124.
-
(2000)
Microb Ecol
, vol.40
, Issue.2
, pp. 114-124
-
-
Middelboe, M.1
-
27
-
-
34547781107
-
Is there a cost of virus resistance in marine cyanobacteria?
-
Lennon JT, Khatana SAM, Marston MF, Martiny JBH (2007) Is there a cost of virus resistance in marine cyanobacteria? ISME J 1(4):300-312.
-
(2007)
ISME J
, vol.1
, Issue.4
, pp. 300-312
-
-
Lennon, J.T.1
Khatana, S.A.M.2
Marston, M.F.3
Martiny, J.B.H.4
-
28
-
-
84898538844
-
Diversity and geographical distribution of Flavobacterium psychrophilum isolates and their phages: Patterns of susceptibility to phage infection and phage host range
-
Castillo D, Christiansen RH, Espejo R, Middelboe M (2014) Diversity and geographical distribution of Flavobacterium psychrophilum isolates and their phages: Patterns of susceptibility to phage infection and phage host range. Microb Ecol 67(4):748-757.
-
(2014)
Microb Ecol
, vol.67
, Issue.4
, pp. 748-757
-
-
Castillo, D.1
Christiansen, R.H.2
Espejo, R.3
Middelboe, M.4
-
29
-
-
0036899166
-
Biological and biomedical implications of the co-evolution of pathogens and their hosts
-
Woolhouse MEJ, Webster JP, Domingo E, Charlesworth B, Levin BR (2002) Biological and biomedical implications of the co-evolution of pathogens and their hosts. Nat Genet 32(4):569-577.
-
(2002)
Nat Genet
, vol.32
, Issue.4
, pp. 569-577
-
-
Woolhouse, M.E.J.1
Webster, J.P.2
Domingo, E.3
Charlesworth, B.4
Levin, B.R.5
-
30
-
-
84875092761
-
Virus-host swinging party in the oceans: Incorporating biological complexity into paradigms of antagonistic coexistence
-
Avrani S, Schwartz DA, Lindell D (2012) Virus-host swinging party in the oceans: Incorporating biological complexity into paradigms of antagonistic coexistence. Mob Genet Elements 2(2):88-95.
-
(2012)
Mob Genet Elements
, vol.2
, Issue.2
, pp. 88-95
-
-
Avrani, S.1
Schwartz, D.A.2
Lindell, D.3
-
31
-
-
84866776612
-
Bacteria-virus coevolution
-
ed Soyer OS (Springer, New York)
-
Buckling A, Brockhurst M (2012) Bacteria-virus coevolution. Evolutionary Systems Biology, Advances in Experimental Medicine and Biology, ed Soyer OS (Springer, New York), Vol 751, pp 347-370.
-
(2012)
Evolutionary Systems Biology, Advances in Experimental Medicine and Biology
, vol.751
, pp. 347-370
-
-
Buckling, A.1
Brockhurst, M.2
-
32
-
-
84927693101
-
Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities
-
Koskella B, Brockhurst MA (2014) Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities. FEMS Microbiol Rev 38(5):916-931.
-
(2014)
FEMS Microbiol Rev
, vol.38
, Issue.5
, pp. 916-931
-
-
Koskella, B.1
Brockhurst, M.A.2
-
33
-
-
84931749101
-
Host-parasite coevolutionary arms races give way to fluctuating selection
-
Hall AR, Scanlan PD, Morgan AD, Buckling A (2011) Host-parasite coevolutionary arms races give way to fluctuating selection. Ecol Lett 14(7):635-642.
-
(2011)
Ecol Lett
, vol.14
, Issue.7
, pp. 635-642
-
-
Hall, A.R.1
Scanlan, P.D.2
Morgan, A.D.3
Buckling, A.4
-
34
-
-
84859423134
-
Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation
-
Thrall PH, et al. (2012) Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation. Ecol Lett 15(5):425-435.
-
(2012)
Ecol Lett
, vol.15
, Issue.5
, pp. 425-435
-
-
Thrall, P.H.1
-
35
-
-
0033826796
-
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
-
Thingstad TF (2000) Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol Oceanogr 45(6):1320-1328.
-
(2000)
Limnol Oceanogr
, vol.45
, Issue.6
, pp. 1320-1328
-
-
Thingstad, T.F.1
-
36
-
-
84872451505
-
Phage-induced diversification improves host evolvability
-
Williams HT (2013) Phage-induced diversification improves host evolvability. BMC Evol Biol 13(1):17.
-
(2013)
BMC Evol Biol
, vol.13
, Issue.1
, pp. 17
-
-
Williams, H.T.1
-
37
-
-
22144446352
-
Coevolutionary arms races between bacteria and bacteriophage
-
Weitz JS, Hartman H, Levin SA (2005) Coevolutionary arms races between bacteria and bacteriophage. Proc Natl Acad Sci USA 102(27):9535-9540.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.27
, pp. 9535-9540
-
-
Weitz, J.S.1
Hartman, H.2
Levin, S.A.3
-
38
-
-
34249740244
-
Experimental coevolution with bacteria and phage. The Pseudomonas fluorescens - Φ2 model system
-
Brockhurst MA, Morgan AD, Fenton A, Buckling A (2007) Experimental coevolution with bacteria and phage. The Pseudomonas fluorescens - Φ2 model system. Infect Genet Evol 7(4):547-552.
-
(2007)
Infect Genet Evol
, vol.7
, Issue.4
, pp. 547-552
-
-
Brockhurst, M.A.1
Morgan, A.D.2
Fenton, A.3
Buckling, A.4
-
39
-
-
77949423965
-
Antagonistic coevolution accelerates molecular evolution
-
Paterson S, et al. (2010) Antagonistic coevolution accelerates molecular evolution. Nature 464(7286):275-278.
-
(2010)
Nature
, vol.464
, Issue.7286
, pp. 275-278
-
-
Paterson, S.1
-
40
-
-
70350180460
-
Explaining microbial population genomics through phage predation
-
Rodriguez-Valera F, et al. (2009) Explaining microbial population genomics through phage predation. Nat Rev Microbiol 7(11):828-836.
-
(2009)
Nat Rev Microbiol
, vol.7
, Issue.11
, pp. 828-836
-
-
Rodriguez-Valera, F.1
-
41
-
-
84896398453
-
Explaining microbial genomic diversity in light of evolutionary ecology
-
Cordero OX, Polz MF (2014) Explaining microbial genomic diversity in light of evolutionary ecology. Nat Rev Microbiol 12(4):263-273.
-
(2014)
Nat Rev Microbiol
, vol.12
, Issue.4
, pp. 263-273
-
-
Cordero, O.X.1
Polz, M.F.2
-
42
-
-
0033009854
-
Prochlorococcus, a marine photosynthetic prokaryote of global significance
-
Partensky F, Hess WR, Vaulot D (1999) Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev 63(1):106-127.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, Issue.1
, pp. 106-127
-
-
Partensky, F.1
Hess, W.R.2
Vaulot, D.3
-
43
-
-
84879060146
-
Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
-
Flombaum P, et al. (2013) Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. Proc Natl Acad Sci USA 110(24): 9824-9829.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.24
, pp. 9824-9829
-
-
Flombaum, P.1
-
44
-
-
66749151555
-
Ecological genomics of marine picocyanobacteria
-
Scanlan DJ, et al. (2009) Ecological genomics of marine picocyanobacteria. Microbiol Mol Biol Rev 73(2):249-299.
-
(2009)
Microbiol Mol Biol Rev
, vol.73
, Issue.2
, pp. 249-299
-
-
Scanlan, D.J.1
-
45
-
-
84926417391
-
The Genus Prochlorococcus, Phylum Cyanobacteria
-
eds Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F (Springer, Berlin)
-
Lindell D (2014) The genus Prochlorococcus, phylum Cyanobacteria. The Prokaryotes - Other Major Lineages of Bacteria and the Archaea, eds Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F (Springer, Berlin), pp 829-845.
-
(2014)
The Prokaryotes - Other Major Lineages of Bacteria and the Archaea
, pp. 829-845
-
-
Lindell, D.1
-
46
-
-
84927050723
-
Prochlorococcus: The structure and function of collective diversity
-
Biller SJ, Berube PM, Lindell D, Chisholm SW (2015) Prochlorococcus : The structure and function of collective diversity. Nat Rev Microbiol 13(1):13-27.
-
(2015)
Nat Rev Microbiol
, vol.13
, Issue.1
, pp. 13-27
-
-
Biller, S.J.1
Berube, P.M.2
Lindell, D.3
Chisholm, S.W.4
-
47
-
-
0027802137
-
Marine cyanophages infecting oceanic and coastal strains of Synechococcus: Abundance, morphology, cross-infectivity and growth characteristics
-
Suttle CA, Chan AM (1993) Marine cyanophages infecting oceanic and coastal strains of Synechococcus: Abundance, morphology, cross-infectivity and growth characteristics. Mar Ecol Prog Ser 92(1-2):99-109.
-
(1993)
Mar Ecol Prog Ser
, vol.92
, Issue.1-2
, pp. 99-109
-
-
Suttle, C.A.1
Chan, A.M.2
-
48
-
-
0041375471
-
Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
-
Sullivan MB, Waterbury JB, Chisholm SW (2003) Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature 424(6952):1047-1051.
-
(2003)
Nature
, vol.424
, Issue.6952
, pp. 1047-1051
-
-
Sullivan, M.B.1
Waterbury, J.B.2
Chisholm, S.W.3
-
49
-
-
84926419476
-
Host-dependent differences in abundance, composition and host range of cyanophages from the Red Sea
-
Dekel-Bird NP, Sabehi G, Mosevitzky B, Lindell D (2015) Host-dependent differences in abundance, composition and host range of cyanophages from the Red Sea. Environ Microbiol 17(4):1286-1299.
-
(2015)
Environ Microbiol
, vol.17
, Issue.4
, pp. 1286-1299
-
-
Dekel-Bird, N.P.1
Sabehi, G.2
Mosevitzky, B.3
Lindell, D.4
-
50
-
-
0028975082
-
Growth of Prochlorococcus, a photosynthetic prokaryote, in the equatorial pacific ocean
-
Vaulot D, Marie D, Olson RJ, Chisholm SW (1995) Growth of Prochlorococcus, a photosynthetic prokaryote, in the equatorial pacific ocean. Science 268(5216):1480-1482.
-
(1995)
Science
, vol.268
, Issue.5216
, pp. 1480-1482
-
-
Vaulot, D.1
Marie, D.2
Olson, R.J.3
Chisholm, S.W.4
-
51
-
-
0002326959
-
Prochlorococcus growth rate and contribution to primary production in the equatorial and subtropical North Pacific Ocean
-
Liu HB, Nolla HA, Campbell L (1997) Prochlorococcus growth rate and contribution to primary production in the equatorial and subtropical North Pacific Ocean. Aquat Microb Ecol 12(1):39-47.
-
(1997)
Aquat Microb Ecol
, vol.12
, Issue.1
, pp. 39-47
-
-
Liu, H.B.1
Nolla, H.A.2
Campbell, L.3
-
53
-
-
0032169654
-
The great escape: Structure and function of the autotransporter proteins
-
Henderson IR, Navarro-Garcia F, Nataro JP (1998) The great escape: Structure and function of the autotransporter proteins. Trends Microbiol 6(9):370-378.
-
(1998)
Trends Microbiol
, vol.6
, Issue.9
, pp. 370-378
-
-
Henderson, I.R.1
Navarro-Garcia, F.2
Nataro, J.P.3
-
54
-
-
0035111746
-
Virulence functions of autotransporter proteins
-
Henderson IR, Nataro JP (2001) Virulence functions of autotransporter proteins. Infect Immun 69(3):1231-1243.
-
(2001)
Infect Immun
, vol.69
, Issue.3
, pp. 1231-1243
-
-
Henderson, I.R.1
Nataro, J.P.2
-
55
-
-
10344232466
-
Type V protein secretion pathway: The autotransporter story
-
Henderson IR, Navarro-Garcia F, Desvaux M, Fernandez RC, Ala'Aldeen D (2004) Type V protein secretion pathway: The autotransporter story. Microbiol Mol Biol Rev 68(4):692-744.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, Issue.4
, pp. 692-744
-
-
Henderson, I.R.1
Navarro-Garcia, F.2
Desvaux, M.3
Fernandez, R.C.4
Ala'Aldeen, D.5
-
56
-
-
0015453608
-
Mutator gene studies in Escherichia coli: The mutS gene
-
Cox EC, Degnen GE, Scheppe ML (1972) Mutator gene studies in Escherichia coli: The mutS gene. Genetics 72(4):551-567.
-
(1972)
Genetics
, vol.72
, Issue.4
, pp. 551-567
-
-
Cox, E.C.1
Degnen, G.E.2
Scheppe, M.L.3
-
57
-
-
0036274037
-
The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: Molecular characterization of naturally occurring mutants
-
Oliver A, Baquero F, Blázquez J (2002) The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: Molecular characterization of naturally occurring mutants. Mol Microbiol 43(6):1641-1650.
-
(2002)
Mol Microbiol
, vol.43
, Issue.6
, pp. 1641-1650
-
-
Oliver, A.1
Baquero, F.2
Blázquez, J.3
-
58
-
-
37249025333
-
Coevolution with viruses drives the evolution of bacterial mutation rates
-
Pal C, Maciá MD, Oliver A, Schachar I, Buckling A (2007) Coevolution with viruses drives the evolution of bacterial mutation rates. Nature 450(7172):1079-1081.
-
(2007)
Nature
, vol.450
, Issue.7172
, pp. 1079-1081
-
-
Pal, C.1
Maciá, M.D.2
Oliver, A.3
Schachar, I.4
Buckling, A.5
-
59
-
-
84863393863
-
Repeatability and contingency in the evolution of a key innovation in phage lambda
-
Meyer JR, et al. (2012) Repeatability and contingency in the evolution of a key innovation in phage lambda. Science 335(6067):428-432.
-
(2012)
Science
, vol.335
, Issue.6067
, pp. 428-432
-
-
Meyer, J.R.1
-
60
-
-
33645232361
-
Genomic islands and the ecology and evolution of Prochlorococcus
-
Coleman ML, et al. (2006) Genomic islands and the ecology and evolution of Prochlorococcus. Science 311(5768):1768-1770.
-
(2006)
Science
, vol.311
, Issue.5768
, pp. 1768-1770
-
-
Coleman, M.L.1
-
61
-
-
34548513271
-
Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution
-
Lindell D, et al. (2007) Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature 449(7158):83-86.
-
(2007)
Nature
, vol.449
, Issue.7158
, pp. 83-86
-
-
Lindell, D.1
-
62
-
-
84878320253
-
Genomic island genes in a coastal marine Synechococcus strain confer enhanced tolerance to copper and oxidative stress
-
Stuart RK, Brahamsha B, Busby K, Palenik B (2013) Genomic island genes in a coastal marine Synechococcus strain confer enhanced tolerance to copper and oxidative stress. ISME J 7(6):1139-1149.
-
(2013)
ISME J
, vol.7
, Issue.6
, pp. 1139-1149
-
-
Stuart, R.K.1
Brahamsha, B.2
Busby, K.3
Palenik, B.4
-
63
-
-
0001498391
-
Experimental studies of pleiotropy and epistasis in Escherichia coli. II. Compensation for maldaptive effects associated with resistance to virus T4
-
Lenski RE (1988) Experimental studies of pleiotropy and epistasis in Escherichia coli. II. Compensation for maldaptive effects associated with resistance to virus T4. Evolution 42(3):433-440.
-
(1988)
Evolution
, vol.42
, Issue.3
, pp. 433-440
-
-
Lenski, R.E.1
-
64
-
-
80052318159
-
Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli
-
Kashiwagi A, Yomo T (2011) Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli. PLoS Genet 7(8):e1002188.
-
(2011)
PLoS Genet
, vol.7
, Issue.8
, pp. e1002188
-
-
Kashiwagi, A.1
Yomo, T.2
-
65
-
-
78649307701
-
Parallel changes in host resistance to viral infection during 45,000 generations of relaxed selection
-
Meyer JR, et al. (2010) Parallel changes in host resistance to viral infection during 45,000 generations of relaxed selection. Evolution 64(10):3024-3034.
-
(2010)
Evolution
, vol.64
, Issue.10
, pp. 3024-3034
-
-
Meyer, J.R.1
-
66
-
-
49249112719
-
The shape of an ecological trade-off varies with environment
-
Jessup CM, Bohannan BJM (2008) The shape of an ecological trade-off varies with environment. Ecol Lett 11(9):947-959.
-
(2008)
Ecol Lett
, vol.11
, Issue.9
, pp. 947-959
-
-
Jessup, C.M.1
Bohannan, B.J.M.2
-
67
-
-
33745615117
-
The competitive cost of antibiotic resistance in Mycobacterium tuberculosis
-
Gagneux S, et al. (2006) The competitive cost of antibiotic resistance in Mycobacterium tuberculosis. Science 312(5782):1944-1946.
-
(2006)
Science
, vol.312
, Issue.5782
, pp. 1944-1946
-
-
Gagneux, S.1
-
68
-
-
84889590334
-
Bacterial evolution of antibiotic hypersensitivity
-
Lázár V, et al. (2013) Bacterial evolution of antibiotic hypersensitivity. Mol Syst Biol 9(1):700.
-
(2013)
Mol Syst Biol
, vol.9
, Issue.1
, pp. 700
-
-
Lázár, V.1
-
69
-
-
84874100936
-
Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress
-
Rodríguez-Verdugo A, Gaut BS, Tenaillon O (2013) Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress. BMC Evol Biol 13(1):50.
-
(2013)
BMC Evol Biol
, vol.13
, Issue.1
, pp. 50
-
-
Rodríguez-Verdugo, A.1
Gaut, B.S.2
Tenaillon, O.3
-
70
-
-
77949569493
-
Antibiotic resistance and its cost: Is it possible to reverse resistance?
-
Andersson DI, Hughes D (2010) Antibiotic resistance and its cost: Is it possible to reverse resistance? Nat Rev Microbiol 8(4):260-271.
-
(2010)
Nat Rev Microbiol
, vol.8
, Issue.4
, pp. 260-271
-
-
Andersson, D.I.1
Hughes, D.2
-
71
-
-
84555209977
-
Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes
-
Comas I, et al. (2012) Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes. Nat Genet 44(1):106-110.
-
(2012)
Nat Genet
, vol.44
, Issue.1
, pp. 106-110
-
-
Comas, I.1
-
72
-
-
0027132575
-
ABC transporters: Bacterial exporters
-
Fath MJ, Kolter R (1993) ABC transporters: Bacterial exporters. Microbiol Rev 57(4):995-1017.
-
(1993)
Microbiol Rev
, vol.57
, Issue.4
, pp. 995-1017
-
-
Fath, M.J.1
Kolter, R.2
-
73
-
-
84901660516
-
A theoretical analysis of how strain-specific viruses can control microbial species diversity
-
Thingstad TF, Våge S, Storesund JE, Sandaa R-A, Giske J (2014) A theoretical analysis of how strain-specific viruses can control microbial species diversity. Proc Natl Acad Sci USA 111(21):7813-7818.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.21
, pp. 7813-7818
-
-
Thingstad, T.F.1
Våge, S.2
Storesund, J.E.3
Sandaa, R.-A.4
Giske, J.5
-
74
-
-
84876502182
-
Diversity and evolutionary relationships of T7-like podoviruses infecting marine cyanobacteria
-
Dekel-Bird NP, et al. (2013) Diversity and evolutionary relationships of T7-like podoviruses infecting marine cyanobacteria. Environ Microbiol 15(5):1476-1491.
-
(2013)
Environ Microbiol
, vol.15
, Issue.5
, pp. 1476-1491
-
-
Dekel-Bird, N.P.1
-
75
-
-
44649160016
-
Culturing the marine cyanobacterium Prochlorococcus
-
Moore LR, et al. (2007) Culturing the marine cyanobacterium Prochlorococcus. Limnol Oceanogr Methods 5(10):353-362.
-
(2007)
Limnol Oceanogr Methods
, vol.5
, Issue.10
, pp. 353-362
-
-
Moore, L.R.1
-
76
-
-
47749145412
-
Facilitation of robust growth of Prochlorococcus colonies and dilute liquid cultures by "helper" heterotrophic bacteria
-
Morris JJ, Kirkegaard R, Szul MJ, Johnson ZI, Zinser ER (2008) Facilitation of robust growth of Prochlorococcus colonies and dilute liquid cultures by "helper" heterotrophic bacteria. Appl Environ Microbiol 74(14):4530-4534.
-
(2008)
Appl Environ Microbiol
, vol.74
, Issue.14
, pp. 4530-4534
-
-
Morris, J.J.1
Kirkegaard, R.2
Szul, M.J.3
Johnson, Z.I.4
Zinser, E.R.5
-
77
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14):1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
78
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, et al.; 1000 Genome Project Data Processing Subgroup (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25(16):2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
-
79
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, et al. (2010) The Pfam protein families database. Nucleic Acids Res 38(Database issue):D211-D222.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISSUE
, pp. D211-D222
-
-
Finn, R.D.1
-
80
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov RL, Galperin MY, Natale DA, Koonin EV (2000) The COG database: A tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res 28(1):33-36.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
81
-
-
84862202790
-
ProPortal: A resource for integrated systems biology of Prochlorococcus and its phage
-
D1
-
Kelly L, Huang KH, Ding H, Chisholm SW (2012) ProPortal: A resource for integrated systems biology of Prochlorococcus and its phage. Nucleic Acids Res 40(Database issue, D1):D632-D640.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.DATABASE ISSUE
, pp. D632-D640
-
-
Kelly, L.1
Huang, K.H.2
Ding, H.3
Chisholm, S.W.4
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