메뉴 건너뛰기




Volumn 65, Issue 2, 2015, Pages 145-153

Construction of a linkage map based on retrotransposon insertion polymorphisms in sweetpotato via high-throughput sequencing

Author keywords

High throughput sequencing; Linkage map; Polyploidy; Pseudo testcross; Retrotransposon; Sweetpotato

Indexed keywords

IPOMOEA BATATAS;

EID: 84928609621     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.65.145     Document Type: Article
Times cited : (28)

References (38)
  • 1
    • 33645415035 scopus 로고    scopus 로고
    • TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports
    • Antonius-Klemola, K., R. Kalendar and A.H. Schulman (2006) TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports. Theor. Appl. Genet. 112: 999-1008.
    • (2006) Theor. Appl. Genet , vol.112 , pp. 999-1008
    • Antonius-Klemola, K.1    Kalendar, R.2    Schulman, A.H.3
  • 2
    • 77956369865 scopus 로고    scopus 로고
    • Transposable elements in a marginal plant population: Temporal fluctuations provide new insights into genome evolution of wild diploid wheat
    • Belyayev, A., R. Kalendar, L. Brodsky, E. Nevo, A. Schulman and O. Raskina (2010) Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat. Mob. DNA 1: 1-6.
    • (2010) Mob. DNA , vol.1 , pp. 1-6
    • Belyayev, A.1    Kalendar, R.2    Brodsky, L.3    Nevo, E.4    Schulman, A.5    Raskina, O.6
  • 3
    • 41549135765 scopus 로고    scopus 로고
    • Development of a genetic linkage map and identification of homologous linkage groups in sweet potato using multiple-dose AFLP markers
    • Cervantes-Flores, JC., G.C. Yencho, A. Kriegner, K.V. Pecota, M.A. Faulk, R.O.M. Mwanga and B.R. Sosinski (2008) Development of a genetic linkage map and identification of homologous linkage groups in sweet potato using multiple-dose AFLP markers. Mol. Breed. 21: 511-532.
    • (2008) Mol. Breed , vol.21 , pp. 511-532
    • Cervantes-Flores, J.C.1    Yencho, G.C.2    Kriegner, A.3    Pecota, K.V.4    Faulk, M.A.5    Mwanga, R.6    Sosinski, B.R.7
  • 4
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • Feschotte, C., N. Jiang and S.R. Wessler (2002) Plant transposable elements: where genetics meets genomics. Nat. Rev. Genet. 3: 329-341.
    • (2002) Nat. Rev. Genet , vol.3 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 5
    • 0028136089 scopus 로고
    • Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudotestcross: Mapping strategy and RAPD markers
    • Grattapaglia, D. and R. Sederoff (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudotestcross: mapping strategy and RAPD markers. Genetics 137: 1121-1137.
    • (1994) Genetics , vol.137 , pp. 1121-1137
    • Grattapaglia, D.1    Sederoff, R.2
  • 6
    • 0000938339 scopus 로고
    • Cytological observations and fertility measurements of sweet potato [Ipomoea batatas (L.) Lam.]
    • Jones, A. (1965) Cytological observations and fertility measurements of sweet potato [Ipomoea batatas (L.) Lam.]. Proc. Am. Soc. Hort. Sci. 86: 527-537.
    • (1965) Proc. Am. Soc. Hort. Sci , vol.86 , pp. 527-537
    • Jones, A.1
  • 7
    • 0012955560 scopus 로고
    • Theoretical segregation ratios of qualitatively inherited characters for hexaploid sweet potato (Ipomoea batatas L.)
    • U. S. Department of Agriculture in cooperation with Georgia Agricultural Experiment Stations
    • Jones, A. (1967) Theoretical segregation ratios of qualitatively inherited characters for hexaploid sweet potato (Ipomoea batatas L.). Technical Bulletin No. 1368. Agricultural Research Service, U. S. Department of Agriculture in cooperation with Georgia Agricultural Experiment Stations, pp. 1-6.
    • (1967) Technical Bulletin No. 1368. Agricultural Research Service , pp. 1-6
    • Jones, A.1
  • 8
    • 0032943978 scopus 로고    scopus 로고
    • IRAP and REMAP: Two new retrotransposon-based DNA fingerprinting techniques
    • Kalendar, R., T. Grob, M. Regina, A. Suoniemi and A. Schulman (1999) IRAP and REMAP: two new retrotransposon-based DNA fingerprinting techniques. Theor. Appl. Genet. 98: 704-711.
    • (1999) Theor. Appl. Genet , vol.98 , pp. 704-711
    • Kalendar, R.1    Grob, T.2    Regina, M.3    Suoniemi, A.4    Schulman, A.5
  • 9
    • 84874087807 scopus 로고    scopus 로고
    • The use of retrotransposon-based molecular markers to analyze genetic diversity
    • Kalendar, R. (2011) The use of retrotransposon-based molecular markers to analyze genetic diversity. Ratar. Povrt. 48: 261-274.
    • (2011) Ratar. Povrt , vol.48 , pp. 261-274
    • Kalendar, R.1
  • 10
    • 79953078781 scopus 로고    scopus 로고
    • Analysis of plant diversity with retrotransposonbased molecular markers
    • Kalendar, R., A.J. Flavell, T.H.N. Ellis, T. Sjakste, C. Moisy and A.H. Schulman (2011) Analysis of plant diversity with retrotransposonbased molecular markers. Heredity 106: 520-530.
    • (2011) Heredity , vol.106 , pp. 520-530
    • Kalendar, R.1    Flavell, A.J.2    Ellis, T.3    Sjakste, T.4    Moisy, C.5    Schulman, A.H.6
  • 11
    • 0036226603 scopus 로고    scopus 로고
    • BLAT—The BLAST-Like Alignment Tool
    • Kent, W.J. (2002) BLAT—The BLAST-Like Alignment Tool. Genome Res. 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 12
    • 77952770789 scopus 로고    scopus 로고
    • Molecular markers based on LTR retrotransposons BARE-1 and Jeli uncover different strata of evolutionary relationships in diploid wheats
    • Konovalov, F.A., N.P. Goncharov, S. Goryunova, A. Shaturova, T. Proshlyakova and A. Kudryavtsev (2010) Molecular markers based on LTR retrotransposons BARE-1 and Jeli uncover different strata of evolutionary relationships in diploid wheats. Mol. Genet. Genomics 283: 551-563.
    • (2010) Mol. Genet. Genomics , vol.283 , pp. 551-563
    • Konovalov, F.A.1    Goncharov, N.P.2    Goryunova, S.3    Shaturova, A.4    Proshlyakova, T.5    Kudryavtsev, A.6
  • 13
    • 0037386908 scopus 로고    scopus 로고
    • A genetic linkage map of sweet potato [Ipomoea batatas (L.) Lam.] based on AFLP markers
    • Kriegner, A., J.C. Cervantes, K. Burg, R.O.M. Mwanga and D. Zhang (2003) A genetic linkage map of sweet potato [Ipomoea batatas (L.) Lam.] based on AFLP markers. Mol. Breed. 11: 169-185.
    • (2003) Mol. Breed , vol.11 , pp. 169-185
    • Kriegner, A.1    Cervantes, J.C.2    Burg, K.3    Mwanga, R.4    Zhang, D.5
  • 15
    • 0035206133 scopus 로고    scopus 로고
    • Applications of retrotransposons as genetic tools in plant biology
    • Kumar, A. and H. Hirochika (2001) Applications of retrotransposons as genetic tools in plant biology. Trends Plant Sci. 6: 127-134.
    • (2001) Trends Plant Sci , vol.6 , pp. 127-134
    • Kumar, A.1    Hirochika, H.2
  • 17
    • 80051997952 scopus 로고    scopus 로고
    • Dynamic interactions between transposable elements and their hosts
    • Levin, H.L. and J.V. Moran (2011) Dynamic interactions between transposable elements and their hosts. Nat. Rev. Genet. 12: 615-627.
    • (2011) Nat. Rev. Genet , vol.12 , pp. 615-627
    • Levin, H.L.1    Moran, J.V.2
  • 18
    • 79551599954 scopus 로고    scopus 로고
    • Establishment of molecular linkage maps using SRAP markers in sweet potato
    • Li, A.-X., Q.-C. Liu, Q.-M. Wang, L.-M. Zhang, H. Zhai and S.-Z. Liu (2010) Establishment of molecular linkage maps using SRAP markers in sweet potato. Acta Agron. Sin. 36: 1286-1295.
    • (2010) Acta Agron. Sin , vol.36 , pp. 1286-1295
    • Li, A.-X.1    Liu, Q.-C.2    Wang, Q.-M.3    Zhang, L.-M.4    Zhai, H.5    Liu, S.-Z.6
  • 19
    • 36349028715 scopus 로고    scopus 로고
    • Ty1-copia retrotransposon-based SSAP marker development and its potential in the genetic study of cucurbits
    • Lou, Q. and J. Chen (2007) Ty1-copia retrotransposon-based SSAP marker development and its potential in the genetic study of cucurbits. Genome 810: 802-810.
    • (2007) Genome , vol.810 , pp. 802-810
    • Lou, Q.1    Chen, J.2
  • 20
    • 0001264415 scopus 로고
    • Cytological evidence on the origin of sweet potato
    • Magoon, M.L., R. Krishnan and K. Vijaya Bai (1970) Cytological evidence on the origin of sweet potato. Theor. Appl. Genet. 40: 360-366.
    • (1970) Theor. Appl. Genet , vol.40 , pp. 360-366
    • Magoon, M.L.1    Krishnan, R.2    Vijaya Bai, K.3
  • 22
    • 84928645015 scopus 로고    scopus 로고
    • Development of DNA markers for anthocyanin content purple sweet potato using active retrotransposon insertion polymorphisms
    • Monden, Y., A. Yamamoto and M. Tahara (2013) Development of DNA markers for anthocyanin content purple sweet potato using active retrotransposon insertion polymorphisms. DNA Polymorphism (DNA Takei) 21: 47-54.
    • (2013) DNA Polymorphism (DNA Takei) , vol.21 , pp. 47-54
    • Monden, Y.1    Yamamoto, A.2    Tahara, M.3
  • 23
    • 84909641057 scopus 로고    scopus 로고
    • Efficient screening of long terminal repeat retrotransposons that show high insertion polymorphism via high-throughput sequencing of the primer binding site
    • Monden, Y., N. Fujii, K. Yamaguchi, K. Ikeo, Y. Nakazawa, T. Waki, K. Hirashima, Y. Uchiyama and M. Tahara (2014a) Efficient screening of long terminal repeat retrotransposons that show high insertion polymorphism via high-throughput sequencing of the primer binding site. Genome 57: 245-252.
    • (2014) Genome , vol.57 , pp. 245-252
    • Monden, Y.1    Fujii, N.2    Yamaguchi, K.3    Ikeo, K.4    Nakazawa, Y.5    Waki, T.6    Hirashima, K.7    Uchiyama, Y.8    Tahara, M.9
  • 24
    • 85006669182 scopus 로고    scopus 로고
    • Characterization of a novel retrotransposon TriRe-1 using nullisomic-tetrasomic lines of hexaploid wheat
    • Monden, Y., T. Takai and M. Tahara (2014b) Characterization of a novel retrotransposon TriRe-1 using nullisomic-tetrasomic lines of hexaploid wheat. Sci. Rep. Facul. Agr. Okayama University 103: 21-30.
    • (2014) Sci. Rep. Facul. Agr. Okayama University , vol.103 , pp. 21-30
    • Monden, Y.1    Takai, T.2    Tahara, M.3
  • 25
    • 84903837014 scopus 로고    scopus 로고
    • Efficient DNA fingerprinting based on the targeted sequencing of active retrotransposon insertion sites using a bench-top high-throughput sequencing platform
    • Monden, Y., A. Yamamoto, A. Shindo and M. Tahara (2014c) Efficient DNA fingerprinting based on the targeted sequencing of active retrotransposon insertion sites using a bench-top high-throughput sequencing platform. DNA Res. 21: 491-498.
    • (2014) DNA Res , vol.21 , pp. 491-498
    • Monden, Y.1    Yamamoto, A.2    Shindo, A.3    Tahara, M.4
  • 26
    • 84888363451 scopus 로고    scopus 로고
    • Retrotransposon insertional polymorphism in Iranian bread wheat cultivars and breeding lines revealed by IRAP and REMAP markers
    • Nasri, S., B. Abdollahi Mandoulakani, R. Darvishzadeh and I. Bernousi (2013) Retrotransposon insertional polymorphism in Iranian bread wheat cultivars and breeding lines revealed by IRAP and REMAP markers. Biochem. Genet. 51: 927-943.
    • (2013) Biochem. Genet , vol.51 , pp. 927-943
    • Nasri, S.1    Abdollahi Mandoulakani, B.2    Darvishzadeh, R.3    Bernousi, I.4
  • 29
    • 2542424855 scopus 로고    scopus 로고
    • The application of LTR retrotransposons as molecular markers in plants
    • Schulman, A.H., A.H. Flavell and T.H.N. Ellis (2004) The application of LTR retrotransposons as molecular markers in plants. Methods Mol. Biol. 260: 145-173.
    • (2004) Methods Mol. Biol , vol.260 , pp. 145-173
    • Schulman, A.H.1    Flavell, A.H.2    Ellis, T.3
  • 30
    • 0002271753 scopus 로고
    • Genomic structure of the sweet potato and hexaploids in Ipomoea trifida (HBK) DON
    • Shiotani, I. and T. Kawase (1989) Genomic structure of the sweet potato and hexaploids in Ipomoea trifida (HBK) DON. Jpn. J. Breed. 39: 57-66.
    • (1989) Jpn. J. Breed , vol.39 , pp. 57-66
    • Shiotani, I.1    Kawase, T.2
  • 31
    • 0345203138 scopus 로고
    • Taxonomic significance of karyomorphology in Ipomoea spp
    • Sinha, S. and S.N. Sharma (1992) Taxonomic significance of karyomorphology in Ipomoea spp. Cytologia 57: 289-293.
    • (1992) Cytologia , vol.57 , pp. 289-293
    • Sinha, S.1    Sharma, S.N.2
  • 32
    • 79958728248 scopus 로고    scopus 로고
    • Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposonbased markers
    • Smýkal, P., N. Bačová-Kerteszová, R. Kalendar, J. Corander, A.H. Schulman and M. Pavelek (2011) Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposonbased markers. Theor. Appl. Genet. 122: 1385-1397.
    • (2011) Theor. Appl. Genet , vol.122 , pp. 1385-1397
    • Smýkal, P.1    Bačová-Kerteszová, N.2    Kalendar, R.3    Corander, J.4    Schulman, A.H.5    Pavelek, M.6
  • 34
    • 4544229957 scopus 로고    scopus 로고
    • Isolation of an active element from a highcopy-number family of retrotransposons in the sweet potato genome
    • Tahara, M., T. Aoki, S. Suzuka, H. Yamashita, M. Tanaka, S. Matsunaga and S. Kokumai (2004) Isolation of an active element from a highcopy-number family of retrotransposons in the sweet potato genome. Mol. Genet. Genomics 272: 116-127.
    • (2004) Mol. Genet. Genomics , vol.272 , pp. 116-127
    • Tahara, M.1    Aoki, T.2    Suzuka, S.3    Yamashita, H.4    Tanaka, M.5    Matsunaga, S.6    Kokumai, S.7
  • 35
    • 0001096725 scopus 로고
    • Meiotic studies in the sweet potato (Ipomoea batatas Lam.)
    • Ting, Y.C. and A.E. Kehr (1953) Meiotic studies in the sweet potato (Ipomoea batatas Lam.). J. Hered. 44: 207-211.
    • (1953) J. Hered , vol.44 , pp. 207-211
    • Ting, Y.C.1    Kehr, A.E.2
  • 36
    • 0030683636 scopus 로고    scopus 로고
    • Autopolyploidy versus allopolyploidy and low-density randomly amplified polymorphic DNA linkage maps of sweet potato
    • Ukoskit, K. and P.G. Thompson (1997) Autopolyploidy versus allopolyploidy and low-density randomly amplified polymorphic DNA linkage maps of sweet potato. J. Amer. Soc. Hort. Sci. 122: 822-828.
    • (1997) J. Amer. Soc. Hort. Sci , vol.122 , pp. 822-828
    • Ukoskit, K.1    Thompson, P.G.2
  • 37
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequencespecific amplification polymorphisms (S-SAP)
    • Waugh, R., K. McLean, A.J. Flavell, S.R. Pearce, A. Kumar, B.B. Thomas and W. Powell (1997) Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequencespecific amplification polymorphisms (S-SAP). Mol. Gen. Genet. 253: 687-694.
    • (1997) Mol. Gen. Genet , vol.253 , pp. 687-694
    • Waugh, R.1    McLean, K.2    Flavell, A.J.3    Pearce, S.R.4    Kumar, A.5    Thomas, B.B.6    Powell, W.7
  • 38
    • 84888013428 scopus 로고    scopus 로고
    • A genetic linkage map based on AFLP and SSR markers and mapping of QTL for dry-matter content in sweet potato
    • Zhao, N., X. Yu, Q. Jie, H. Li, H. Li, J. Hu, H. Zhai, S. He and Q. Liu (2013) A genetic linkage map based on AFLP and SSR markers and mapping of QTL for dry-matter content in sweet potato. Mol. Breed. 32: 807-820.
    • (2013) Mol. Breed , vol.32 , pp. 807-820
    • Zhao, N.1    Yu, X.2    Jie, Q.3    Li, H.4    Li, H.5    Hu, J.6    Zhai, H.7    He, S.8    Liu, Q.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.