메뉴 건너뛰기




Volumn 282, Issue 9, 2015, Pages 1647-1657

The many faces of long noncoding RNAs

Author keywords

enhancer; eRNAs; lncRNAs; noncoding; transcription

Indexed keywords

LONG UNTRANSLATED RNA; PROTEIN P53; RNA; RNA BINDING PROTEIN; SMALL INTERFERING RNA; TRANSCRIPTION FACTOR EZH2;

EID: 84928471453     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/febs.13101     Document Type: Article
Times cited : (49)

References (77)
  • 9
    • 84890415138 scopus 로고    scopus 로고
    • Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features
    • Lv J, Liu H, Huang Z, Su J, He H, Xiu Y, Zhang Y, &, Wu Q, (2013) Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features. Nucleic Acids Res 41, 10044-10061.
    • (2013) Nucleic Acids Res , vol.41 , pp. 10044-10061
    • Lv, J.1    Liu, H.2    Huang, Z.3    Su, J.4    He, H.5    Xiu, Y.6    Zhang, Y.7    Wu, Q.8
  • 11
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia NT, Lareau LF, &, Weissman JS, (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147, 789-802.
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 12
    • 84879969127 scopus 로고    scopus 로고
    • Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins
    • Guttman M, Russell P, Ingolia NT, Weissman JS, &, Lander ES, (2013) Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins. Cell 154, 240-251.
    • (2013) Cell , vol.154 , pp. 240-251
    • Guttman, M.1    Russell, P.2    Ingolia, N.T.3    Weissman, J.S.4    Lander, E.S.5
  • 13
    • 34249021370 scopus 로고    scopus 로고
    • Peptides encoded by short ORFs control development and define a new eukaryotic gene family
    • Galindo MI, Pueyo JI, Fouix S, Bishop SA, &, Couso JP, (2007) Peptides encoded by short ORFs control development and define a new eukaryotic gene family. PLoS Biol 5, e106.
    • (2007) PLoS Biol , vol.5 , pp. e106
    • Galindo, M.I.1    Pueyo, J.I.2    Fouix, S.3    Bishop, S.A.4    Couso, J.P.5
  • 18
    • 84455206362 scopus 로고    scopus 로고
    • Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
    • Ulitsky I, Shkumatava A, Jan CH, Sive H, &, Bartel DP, (2011) Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 147, 1537-1550.
    • (2011) Cell , vol.147 , pp. 1537-1550
    • Ulitsky, I.1    Shkumatava, A.2    Jan, C.H.3    Sive, H.4    Bartel, D.P.5
  • 21
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, &, Rinn JL, (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 25, 1915-1927.
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 22
    • 84871994580 scopus 로고    scopus 로고
    • RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development
    • Tan MH, Au KF, Yablonovitch AL, Wills AE, Chuang J, Baker JC, Wong WH, &, Li JB, (2013) RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. Genome Res 23, 201-216.
    • (2013) Genome Res , vol.23 , pp. 201-216
    • Tan, M.H.1    Au, K.F.2    Yablonovitch, A.L.3    Wills, A.E.4    Chuang, J.5    Baker, J.C.6    Wong, W.H.7    Li, J.B.8
  • 25
    • 84870566023 scopus 로고    scopus 로고
    • Long noncoding RNAs in C. elegans
    • Nam JW, &, Bartel DP, (2012) Long noncoding RNAs in C. elegans. Genome Res 22, 2529-2540.
    • (2012) Genome Res , vol.22 , pp. 2529-2540
    • Nam, J.W.1    Bartel, D.P.2
  • 26
    • 84868519473 scopus 로고    scopus 로고
    • A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails
    • Wilusz JE, JnBaptiste CK, Lu LY, Kuhn CD, Joshua-Tor L, &, Sharp PA, (2012) A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails. Genes Dev 26, 2392-2407.
    • (2012) Genes Dev , vol.26 , pp. 2392-2407
    • Wilusz, J.E.1    Jnbaptiste, C.K.2    Lu, L.Y.3    Kuhn, C.D.4    Joshua-Tor, L.5    Sharp, P.A.6
  • 27
    • 84922706546 scopus 로고    scopus 로고
    • Noncoding RNAs and epigenetic mechanisms during X-Chromosome inactivation
    • Gendrel AV, &, Heard E, (2014) Noncoding RNAs and epigenetic mechanisms during X-Chromosome inactivation. Annu Rev Cell Dev Biol 30, 561-580.
    • (2014) Annu Rev Cell Dev Biol , vol.30 , pp. 561-580
    • Gendrel, A.V.1    Heard, E.2
  • 28
    • 80755187797 scopus 로고    scopus 로고
    • Genomic imprinting: a mammalian epigenetic discovery model
    • Barlow DP, (2011) Genomic imprinting: a mammalian epigenetic discovery model. Annu Rev Genet 45, 379-403.
    • (2011) Annu Rev Genet , vol.45 , pp. 379-403
    • Barlow, D.P.1
  • 34
    • 79959948197 scopus 로고    scopus 로고
    • YY1 tethers Xist RNA to the inactive X nucleation center
    • Jeon Y, &, Lee JT, (2011) YY1 tethers Xist RNA to the inactive X nucleation center. Cell 146, 119-133.
    • (2011) Cell , vol.146 , pp. 119-133
    • Jeon, Y.1    Lee, J.T.2
  • 35
    • 78349252731 scopus 로고    scopus 로고
    • Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA
    • Yao H, Brick K, Evrard Y, Xiao T, Camerini-Otero RD, &, Felsenfeld G, (2010) Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA. Genes Dev 24, 2543-2555.
    • (2010) Genes Dev , vol.24 , pp. 2543-2555
    • Yao, H.1    Brick, K.2    Evrard, Y.3    Xiao, T.4    Camerini-Otero, R.D.5    Felsenfeld, G.6
  • 38
    • 84904507962 scopus 로고    scopus 로고
    • Regulatory interactions between RNA and polycomb repressive complex 2
    • Cifuentes-Rojas C, Hernandez AJ, Sarma K, &, Lee JT, (2014) Regulatory interactions between RNA and polycomb repressive complex 2. Mol Cell 55, 171-185.
    • (2014) Mol Cell , vol.55 , pp. 171-185
    • Cifuentes-Rojas, C.1    Hernandez, A.J.2    Sarma, K.3    Lee, J.T.4
  • 39
    • 84907146072 scopus 로고    scopus 로고
    • Nascent RNA interaction keeps PRC2 activity poised and in check
    • Kaneko S, Son J, Bonasio R, Shen SS, &, Reinberg D, (2014) Nascent RNA interaction keeps PRC2 activity poised and in check. Genes Dev 28, 1983-1988.
    • (2014) Genes Dev , vol.28 , pp. 1983-1988
    • Kaneko, S.1    Son, J.2    Bonasio, R.3    Shen, S.S.4    Reinberg, D.5
  • 40
    • 84936744064 scopus 로고    scopus 로고
    • Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
    • Sugimoto Y, Konig J, Hussain S, Zupan B, Curk T, Frye M, &, Ule J, (2012) Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions. Genome Biol 13, R67.
    • (2012) Genome Biol , vol.13 , pp. R67
    • Sugimoto, Y.1    Konig, J.2    Hussain, S.3    Zupan, B.4    Curk, T.5    Frye, M.6    Ule, J.7
  • 43
    • 80052972698 scopus 로고    scopus 로고
    • The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin
    • Bertani S, Sauer S, Bolotin E, &, Sauer F, (2011) The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin. Mol Cell 43, 1040-1046.
    • (2011) Mol Cell , vol.43 , pp. 1040-1046
    • Bertani, S.1    Sauer, S.2    Bolotin, E.3    Sauer, F.4
  • 55
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, &, Glass CK, (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38, 576-589.
    • (2010) Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 57
    • 0037320461 scopus 로고    scopus 로고
    • Chromatin remodeling and extragenic transcription at the MHC class II locus control region
    • Masternak K, Peyraud N, Krawczyk M, Barras E, &, Reith W, (2003) Chromatin remodeling and extragenic transcription at the MHC class II locus control region. Nat Immunol 4, 132-137.
    • (2003) Nat Immunol , vol.4 , pp. 132-137
    • Masternak, K.1    Peyraud, N.2    Krawczyk, M.3    Barras, E.4    Reith, W.5
  • 58
    • 0030826364 scopus 로고    scopus 로고
    • Intergenic transcription and transinduction of the human beta-globin locus
    • Ashe HL, Monks J, Wijgerde M, Fraser P, &, Proudfoot NJ, (1997) Intergenic transcription and transinduction of the human beta-globin locus. Genes Dev 11, 2494-2509.
    • (1997) Genes Dev , vol.11 , pp. 2494-2509
    • Ashe, H.L.1    Monks, J.2    Wijgerde, M.3    Fraser, P.4    Proudfoot, N.J.5
  • 59
    • 35348927529 scopus 로고    scopus 로고
    • Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination
    • Abarrategui I, &, Krangel MS, (2007) Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination. EMBO J 26, 4380-4390.
    • (2007) EMBO J , vol.26 , pp. 4380-4390
    • Abarrategui, I.1    Krangel, M.S.2
  • 60
    • 53149130940 scopus 로고    scopus 로고
    • The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription
    • Lefevre P, Witham J, Lacroix CE, Cockerill PN, &, Bonifer C, (2008) The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription. Mol Cell 32, 129-139.
    • (2008) Mol Cell , vol.32 , pp. 129-139
    • Lefevre, P.1    Witham, J.2    Lacroix, C.E.3    Cockerill, P.N.4    Bonifer, C.5
  • 64
    • 84881171344 scopus 로고    scopus 로고
    • Enhancer transcripts mark active estrogen receptor binding sites
    • Hah N, Murakami S, Nagari A, Danko CG, &, Kraus WL, (2013) Enhancer transcripts mark active estrogen receptor binding sites. Genome Res 23, 1210-1223.
    • (2013) Genome Res , vol.23 , pp. 1210-1223
    • Hah, N.1    Murakami, S.2    Nagari, A.3    Danko, C.G.4    Kraus, W.L.5
  • 65
    • 84899710827 scopus 로고    scopus 로고
    • Anti-diabetic rosiglitazone remodels the adipocyte transcriptome by redistributing transcription to PPARgamma-driven enhancers
    • Step SE, Lim HW, Marinis JM, Prokesch A, Steger DJ, You SH, Won KJ, &, Lazar MA, (2014) Anti-diabetic rosiglitazone remodels the adipocyte transcriptome by redistributing transcription to PPARgamma-driven enhancers. Genes Dev 28, 1018-1028.
    • (2014) Genes Dev , vol.28 , pp. 1018-1028
    • Step, S.E.1    Lim, H.W.2    Marinis, J.M.3    Prokesch, A.4    Steger, D.J.5    You, S.H.6    Won, K.J.7    Lazar, M.A.8
  • 66
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core LJ, Waterfall JJ, &, Lis JT, (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322, 1845-1848.
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 73
    • 84898747543 scopus 로고    scopus 로고
    • Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
    • Washietl S, Kellis M, &, Garber M, (2014) Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals. Genome Res 24, 616-628.
    • (2014) Genome Res , vol.24 , pp. 616-628
    • Washietl, S.1    Kellis, M.2    Garber, M.3
  • 76
    • 84864624041 scopus 로고    scopus 로고
    • Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus
    • Zhang X, Cowper-Sallari R, Bailey SD, Moore JH, &, Lupien M, (2012) Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus. Genome Res 22, 1437-1446.
    • (2012) Genome Res , vol.22 , pp. 1437-1446
    • Zhang, X.1    Cowper-Sallari, R.2    Bailey, S.D.3    Moore, J.H.4    Lupien, M.5
  • 77
    • 84890231680 scopus 로고    scopus 로고
    • Beyond GWASs: illuminating the dark road from association to function
    • Edwards SL, Beesley J, French JD, &, Dunning AM, (2013) Beyond GWASs: illuminating the dark road from association to function. Am J Hum Genet 93, 779-797.
    • (2013) Am J Hum Genet , vol.93 , pp. 779-797
    • Edwards, S.L.1    Beesley, J.2    French, J.D.3    Dunning, A.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.