메뉴 건너뛰기




Volumn 7, Issue 2, 2015, Pages 410-430

Functional annotation of the ophiostoma novo-ulmi genome: Insights into the phytopathogenicity of the fungal agent of Dutch elm disease

Author keywords

CAZyme; cytochrome P450; mating type; phytopathogen; terpene degradation

Indexed keywords

HEXAPODA; OPHIOSTOMA NOVO-ULMI; PEZIZOMYCOTINA; SORDARIOMYCETES; ULMUS;

EID: 84928252921     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evu281     Document Type: Article
Times cited : (52)

References (110)
  • 1
    • 80052319576 scopus 로고    scopus 로고
    • Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea
    • Amselem J, et al. 2011. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet. 7: e1002230.
    • (2011) PLoS Genet. , vol.7
    • Amselem, J.1
  • 2
    • 77954862988 scopus 로고    scopus 로고
    • Identification and monitoring of Ulmus americana transcripts during in vitro interactions with the Dutch elm disease pathogen Ophiostoma novo-ulmi
    • Aoun M, Jacobi V, Boyle B, Bernier L. 2010. Identification and monitoring of Ulmus americana transcripts during in vitro interactions with the Dutch elm disease pathogen Ophiostoma novo-ulmi. Physiol Mol Plant Pathol. 74:254-266.
    • (2010) Physiol Mol Plant Pathol. , vol.74 , pp. 254-266
    • Aoun, M.1    Jacobi, V.2    Boyle, B.3    Bernier, L.4
  • 3
    • 84866500048 scopus 로고    scopus 로고
    • Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)
    • Aspeborg H, Coutinho PM, Wang Y, Brumer H III, Henrissat B. 2012. Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5). BMC Evol Biol. 12:186.
    • (2012) BMC Evol Biol. , vol.12 , pp. 186
    • Aspeborg, H.1    Coutinho, P.M.2    Wang, Y.3    Brumer, H.4    Henrissat, B.5
  • 4
    • 84928250632 scopus 로고    scopus 로고
    • Towards ophiostomatoid genomics
    • Seifert KA, Wingfield MJ, editors. CBS Biodiversity Series Utrecht (The Netherlands): CBSKNAW
    • Bernier L. 2013. Towards ophiostomatoid genomics. In: Seifert KA, Wingfield MJ, editors. Ophiostomatoid fungi: expanding frontiers, CBS Biodiversity Series Vol. 12. Utrecht (The Netherlands): CBSKNAW. p. 229-236.
    • (2013) Ophiostomatoid Fungi: Expanding Frontiers , vol.12 , pp. 229-236
    • Bernier, L.1
  • 5
    • 84925295871 scopus 로고    scopus 로고
    • Genomics of the Dutch elm disease pathosystem: Are we there yet? IForest
    • 2014
    • Bernier L, et al. 2014. Genomics of the Dutch elm disease pathosystem: are we there yet? iForest. Advance Access published August 7, 2014, doi: 10.3832/ifor1211-008.
    • (2014) Advance Access Published August , vol.7
    • Bernier, L.1
  • 6
    • 0001172981 scopus 로고
    • Mutations in ophiostoma ulmi induced by N-methyl-N'-nitro-N-nitrosoguanidine
    • Bernier L, Hubbes M. 1990. Mutations in Ophiostoma ulmi induced by N-methyl-N'-nitro-N-nitrosoguanidine. Can J Bot. 68:225-231.
    • (1990) Can J Bot. , vol.68 , pp. 225-231
    • Bernier, L.1    Hubbes, M.2
  • 7
    • 77956995081 scopus 로고    scopus 로고
    • Pheromone production in bark beetles
    • Blomquist GJ, et al. 2010. Pheromone production in bark beetles. Insect Biochem Mol Biol. 40:699-712.
    • (2010) Insect Biochem Mol Biol. , vol.40 , pp. 699-712
    • Blomquist, G.J.1
  • 8
    • 79958295159 scopus 로고    scopus 로고
    • Efficacy of tree defense physiology varies with bark beetle population density: A basis for positive feedback in eruptive species
    • Boone CK, Aukema BH, Bohlmann J, Carroll AL, Raffa KF. 2011. Efficacy of tree defense physiology varies with bark beetle population density: a basis for positive feedback in eruptive species. Can J For Res. 41: 1174-1188.
    • (2011) Can J for Res. , vol.41 , pp. 1174-1188
    • Boone, C.K.1    Aukema, B.H.2    Bohlmann, J.3    Carroll, A.L.4    Raffa, K.F.5
  • 9
    • 33947606272 scopus 로고    scopus 로고
    • Characterization of three DNA transposons in the Dutch elm disease fungi and evidence of repeat-induced point (RIP) mutations
    • Bouvet GF, Jacobi V, Bernier L. 2007. Characterization of three DNA transposons in the Dutch elm disease fungi and evidence of repeat-induced point (RIP) mutations. Fungal Genet Biol. 44:430-443.
    • (2007) Fungal Genet Biol. , vol.44 , pp. 430-443
    • Bouvet, G.F.1    Jacobi, V.2    Bernier, L.3
  • 10
    • 39749149537 scopus 로고    scopus 로고
    • Stress-induced mobility of OPHIO1 and OPHIO2, DNA transposons of the Dutch elm disease fungi
    • Bouvet GF, Jacobi V, Plourde KV, Bernier L. 2008. Stress-induced mobility of OPHIO1 and OPHIO2, DNA transposons of the Dutch elm disease fungi. Fungal Genet Biol. 45:565-578.
    • (2008) Fungal Genet Biol. , vol.45 , pp. 565-578
    • Bouvet, G.F.1    Jacobi, V.2    Plourde, K.V.3    Bernier, L.4
  • 11
    • 9444231092 scopus 로고
    • Highly fertile form of the aggressive strain of Ceratocystis ulmi
    • Brasier CM, Gibbs JN. 1975. Highly fertile form of the aggressive strain of Ceratocystis ulmi. Nature 257:128-131.
    • (1975) Nature , vol.257 , pp. 128-131
    • Brasier, C.M.1    Gibbs, J.N.2
  • 12
    • 0034915289 scopus 로고    scopus 로고
    • Designation of the EAN and NAN races of Ophiostoma novo-ulmi as subspecies
    • Brasier CM, Kirk SA. 2001. Designation of the EAN and NAN races of Ophiostoma novo-ulmi as subspecies. Mycol Res. 105:547-554.
    • (2001) Mycol Res. , vol.105 , pp. 547-554
    • Brasier, C.M.1    Kirk, S.A.2
  • 13
    • 0028993070 scopus 로고
    • Ophiostoma himal-ulmi sp. Nov., a new species of Dutch elm disease fungus endemic to the Himalayas
    • Brasier CM, Mehrotra MD. 1995. Ophiostoma himal-ulmi sp. nov., a new species of Dutch elm disease fungus endemic to the Himalayas. Mycol Res. 99:205-215.
    • (1995) Mycol Res. , vol.99 , pp. 205-215
    • Brasier, C.M.1    Mehrotra, M.D.2
  • 14
    • 84875807467 scopus 로고    scopus 로고
    • Isolation and expression of cytochrome P450 genes in the antennae and gut of pine beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae) following exposure to host monoterpenes
    • Cano-Ramírez C, et al. 2013. Isolation and expression of cytochrome P450 genes in the antennae and gut of pine beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae) following exposure to host monoterpenes. Gene 520:47-63.
    • (2013) Gene , vol.520 , pp. 47-63
    • Cano-Ramírez, C.1
  • 15
    • 58149200943 scopus 로고    scopus 로고
    • The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics
    • Cantarel BL, et al. 2009. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 37:D233-D238.
    • (2009) Nucleic Acids Res. , vol.37 , pp. D233-D238
    • Cantarel, B.L.1
  • 16
    • 84857188863 scopus 로고    scopus 로고
    • Artemis: An integrated platform for visualization and analysis of high-throughput sequence-based experimental data
    • Carver T, Harris SR, BerrimanM, Parkhill J, McQuillan JA. 2012. Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Bioinformatics 28:464-469.
    • (2012) Bioinformatics , vol.28 , pp. 464-469
    • Carver, T.1    Harris, S.R.2    Berriman, M.3    Parkhill, J.4    McQuillan, J.A.5
  • 17
    • 59649123167 scopus 로고    scopus 로고
    • Identification of the het-r vegetative incompatibility gene of Podospora anserina as a member of the fast evolving HNWD gene family
    • Chevanne D, et al. 2009. Identification of the het-r vegetative incompatibility gene of Podospora anserina as a member of the fast evolving HNWD gene family. Curr Genet. 55:93-102.
    • (2009) Curr Genet. , vol.55 , pp. 93-102
    • Chevanne, D.1
  • 18
    • 78751621346 scopus 로고    scopus 로고
    • Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes
    • Clutterbuck AJ. 2011. Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes. Fungal Genet Biol. 48:306-326.
    • (2011) Fungal Genet Biol. , vol.48 , pp. 306-326
    • Clutterbuck, A.J.1
  • 20
    • 84999114729 scopus 로고    scopus 로고
    • Genome sequence of the pathogenic fungus Sporothrix schenckii (ATCC 58251)
    • Cuomo CA, et al. 2014. Genome sequence of the pathogenic fungus Sporothrix schenckii (ATCC 58251). Genome Announc. 2: e00446-14.
    • (2014) Genome Announc. , vol.2 , pp. e00446-e00514
    • Cuomo, C.A.1
  • 21
    • 84873524356 scopus 로고    scopus 로고
    • Phenolic compounds in plant defense and pathogen counter-defense mechanisms
    • Cheynier V, Sarni-Manchado P, Quideau S, editors Hoboken (NJ): John Wiley & Sons
    • Daayf F, et al. 2012. Phenolic compounds in plant defense and pathogen counter-defense mechanisms. In: Cheynier V, Sarni-Manchado P, Quideau S, editors. Recent advances in polyphenol research, Vol. 3. Hoboken (NJ): John Wiley & Sons. p. 191-208.
    • (2012) Recent Advances in Polyphenol Research , vol.3 , pp. 191-208
    • Daayf, F.1
  • 22
    • 20244366844 scopus 로고    scopus 로고
    • The genome sequence of the rice blast fungus Magnaporthe grisea
    • Dean RA, et al. 2005. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434:980-986.
    • (2005) Nature , vol.434 , pp. 980-986
    • Dean, R.A.1
  • 24
    • 33846084519 scopus 로고    scopus 로고
    • Mating-type structure, evolution, and function in Euascomycetes
    • Kües U, Fischer R, editors. Berlin (Germany): Springer-Verlag
    • Debuchy R, Turgeon BG. 2006. Mating-type structure, evolution, and function in Euascomycetes. In: Kües U, Fischer R, editors. The Mycota I: growth, differentiation and sexuality. Berlin (Germany): Springer-Verlag. p. 293-323.
    • (2006) The Mycota I: Growth, Differentiation and Sexuality , pp. 293-323
    • Debuchy, R.1    Turgeon, B.G.2
  • 25
    • 77955236241 scopus 로고    scopus 로고
    • Hydroxyproline-rich glycoproteins and plant defence
    • Deepak S, et al. 2010. Hydroxyproline-rich glycoproteins and plant defence. J Phytopathol. 158:585-593.
    • (2010) J Phytopathol. , vol.158 , pp. 585-593
    • Deepak, S.1
  • 26
    • 0033389633 scopus 로고    scopus 로고
    • Pisatin demethylation by fungal pathogens and nonpathogens of pea: Association with pisatin tolerance and virulence
    • Delserone LM, McCluskey K, Matthews DE, Vanetten HD. 1999. Pisatin demethylation by fungal pathogens and nonpathogens of pea: association with pisatin tolerance and virulence. Physiol Mol Plant Pathol. 55:317-326.
    • (1999) Physiol Mol Plant Pathol. , vol.55 , pp. 317-326
    • Delserone, L.M.1    McCluskey, K.2    Matthews, D.E.3    Vanetten, H.D.4
  • 27
    • 33845655641 scopus 로고    scopus 로고
    • VIB-1 is required for expression of genes necessary for programmed cell death in Neurospora crassa
    • Dementhon K, Iyer G, Glass NL. 2006. VIB-1 is required for expression of genes necessary for programmed cell death in Neurospora crassa. Eukaryot Cell. 5:2161-2173.
    • (2006) Eukaryot Cell. , vol.5 , pp. 2161-2173
    • Dementhon, K.1    Iyer, G.2    Glass, N.L.3
  • 28
    • 84877749322 scopus 로고    scopus 로고
    • Exaptation of transposable elements into novel cis-regulatory elements: Is the evidence always strong?
    • de Souza FS, Franchini LF, Rubinstein M. 2013. Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong? Mol Biol Evol. 30:1239-1251.
    • (2013) Mol Biol Evol , vol.30 , pp. 1239-1251
    • De Souza, F.S.1    Franchini, L.F.2    Rubinstein, M.3
  • 29
    • 0028979577 scopus 로고
    • Inheritance of chromosome-length polymorphisms in Ophiostoma ulmi (sensu lato)
    • Dewar K, Bernier L. 1995. Inheritance of chromosome-length polymorphisms in Ophiostoma ulmi (sensu lato). Curr Genet. 27:541-549.
    • (1995) Curr Genet. , vol.27 , pp. 541-549
    • Dewar, K.1    Bernier, L.2
  • 30
    • 0030797897 scopus 로고    scopus 로고
    • A meiotically reproducible chromosome length polymorphism in the ascomycete fungus Ophiostoma ulmi (sensu lato)
    • Dewar K, Bousquet J, Dufour J, Bernier L. 1997. A meiotically reproducible chromosome length polymorphism in the ascomycete fungus Ophiostoma ulmi (sensu lato). Mol Gen Genet. 255:38-44.
    • (1997) Mol Gen Genet. , vol.255 , pp. 38-44
    • Dewar, K.1    Bousquet, J.2    Dufour, J.3    Bernier, L.4
  • 31
    • 84870667343 scopus 로고    scopus 로고
    • The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry
    • de Wit PJGM, et al. 2012. The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry. PLoS Genet. 8:e1003088.
    • (2012) PLoS Genet. , vol.8
    • De Wit, P.J.G.M.1
  • 32
    • 76249102138 scopus 로고    scopus 로고
    • De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
    • DiGuistini S, et al. 2009. De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data. Genome Biol. 10:R94.
    • (2009) Genome Biol. , vol.10 , pp. R94
    • Diguistini, S.1
  • 33
    • 79952296285 scopus 로고    scopus 로고
    • Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen
    • DiGuistini S, et al. 2011. Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen. Proc Natl Acad Sci U S A. 108: 2504-2509.
    • (2011) Proc Natl Acad Sci U S A. , vol.108 , pp. 2504-2509
    • Diguistini, S.1
  • 34
    • 0036733289 scopus 로고    scopus 로고
    • The phenylpropanoid pathway and plant defence - A genomics perspective
    • Dixon RA, et al. 2002. The phenylpropanoid pathway and plant defence - a genomics perspective. Mol Plant Pathol. 3:371-390.
    • (2002) Mol Plant Pathol. , vol.3 , pp. 371-390
    • Dixon, R.A.1
  • 35
    • 0000404737 scopus 로고
    • Accumulation of phytoalexins in Ulmus americana in response to infection by a nonaggressive and an aggressive strain of Ophiostoma ulmi
    • Duchesne LC, Jeng RS, Hubbes M. 1985. Accumulation of phytoalexins in Ulmus americana in response to infection by a nonaggressive and an aggressive strain of Ophiostoma ulmi. Can J Bot. 63: 678-680.
    • (1985) Can J Bot. , vol.63 , pp. 678-680
    • Duchesne, L.C.1    Jeng, R.S.2    Hubbes, M.3
  • 36
    • 48349123125 scopus 로고
    • Accumulation of mansonones e and F in elm callus cultures inoculated with Ophiostoma ulmi
    • Duchesne LC, Jeng RS, Hubbes M, Sticklen MB. 1994. Accumulation of mansonones E and F in elm callus cultures inoculated with Ophiostoma ulmi. Can J Plant Pathol. 16:118-121.
    • (1994) Can J Plant Pathol. , vol.16 , pp. 118-121
    • Duchesne, L.C.1    Jeng, R.S.2    Hubbes, M.3    Sticklen, M.B.4
  • 38
    • 84887804302 scopus 로고    scopus 로고
    • Dosage compensation via transposable element mediated rewiring of a regulatory network
    • Ellison CE, Bachtrog D. 2013. Dosage compensation via transposable element mediated rewiring of a regulatory network. Science 342: 846-850.
    • (2013) Science , vol.342 , pp. 846-850
    • Ellison, C.E.1    Bachtrog, D.2
  • 39
    • 48949118871 scopus 로고    scopus 로고
    • The genome sequence of the model ascomycete fungus Podospora anserina
    • Espagne E, et al. 2008. The genome sequence of the model ascomycete fungus Podospora anserina. Genome Biol. 9:R77.
    • (2008) Genome Biol. , vol.9 , pp. R77
    • Espagne, E.1
  • 40
    • 0032903766 scopus 로고    scopus 로고
    • Localization of a pathogenicity gene in Ophiostoma novo-ulmi and evidence that it may be introgressed from O
    • Et-Touil A, Brasier CM, Bernier L. 1999. Localization of a pathogenicity gene in Ophiostoma novo-ulmi and evidence that it may be introgressed from O. ulmi. Mol Plant Microbe Interact. 12: 6-15.
    • (1999) Ulmi. Mol Plant Microbe Interact. , vol.12 , pp. 6-15
    • Et-Touil, A.1    Brasier, C.M.2    Bernier, L.3
  • 41
    • 84875759967 scopus 로고    scopus 로고
    • Sequencing of the Dutch elm disease fungus genome using the Roche/454 GS-FLX Titanium system in a comparison of multiple genomics core facilities
    • Forgetta V, et al. 2013. Sequencing of the Dutch elm disease fungus genome using the Roche/454 GS-FLX Titanium system in a comparison of multiple genomics core facilities. J Biomol Tech. 24: 39-49.
    • (2013) J Biomol Tech. , vol.24 , pp. 39-49
    • Forgetta, V.1
  • 42
    • 0037464589 scopus 로고    scopus 로고
    • The genome sequence of the filamentous fungus Neurospora crassa
    • Galagan JE, et al. 2003. The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859-868.
    • (2003) Nature , vol.422 , pp. 859-868
    • Galagan, J.E.1
  • 43
    • 0035925092 scopus 로고    scopus 로고
    • Plant-fungal interactions: The search for phytoalexins and other antifungal compounds from higher plants
    • Grayer RJ, Kokubun T. 2001. Plant-fungal interactions: the search for phytoalexins and other antifungal compounds from higher plants. Phytochemistry 56:253-263.
    • (2001) Phytochemistry , vol.56 , pp. 253-263
    • Grayer, R.J.1    Kokubun, T.2
  • 44
    • 84860548726 scopus 로고    scopus 로고
    • Mating-type genes and MAT switching in Saccharomyces cerevisiae
    • Haber JE. 2012. Mating-type genes and MAT switching in Saccharomyces cerevisiae. Genetics 191:33-64.
    • (2012) Genetics , vol.191 , pp. 33-64
    • Haber, J.E.1
  • 45
    • 58249097202 scopus 로고    scopus 로고
    • RIPCAL: A tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences
    • Hane JK, Oliver RP. 2008. RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences. BMC Bioinformatics 9:478.
    • (2008) BMC Bioinformatics , vol.9 , pp. 478
    • Hane, J.K.1    Oliver, R.P.2
  • 46
    • 84878370770 scopus 로고    scopus 로고
    • The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera
    • Haridas S, et al. 2013. The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera. BMC Genomics 14:373.
    • (2013) BMC Genomics , vol.14 , pp. 373
    • Haridas, S.1
  • 47
    • 0345268567 scopus 로고
    • Influence of certain nutrients and light on growth and morphogenesis of the synnema of Ceratocystis ulmi
    • Harris JL, Taber WA. 1970. Influence of certain nutrients and light on growth and morphogenesis of the synnema of Ceratocystis ulmi. Mycologia 62:152-170.
    • (1970) Mycologia , vol.62 , pp. 152-170
    • Harris, J.L.1    Taber, W.A.2
  • 49
    • 80052022957 scopus 로고    scopus 로고
    • Functional categorization of unique expressed sequence tags obtained from the yeast-like growth phase of the elm pathogen Ophiostoma novo-ulmi
    • Hintz W, et al. 2011. Functional categorization of unique expressed sequence tags obtained from the yeast-like growth phase of the elm pathogen Ophiostoma novo-ulmi. BMC Genomics 12:431.
    • (2011) BMC Genomics , vol.12 , pp. 431
    • Hintz, W.1
  • 51
    • 85005324196 scopus 로고
    • Terpenes and unsaturated fatty acids trigger coremia formation by Ceratocystis ulmi
    • Hubbes M. 1975. Terpenes and unsaturated fatty acids trigger coremia formation by Ceratocystis ulmi. Eur J For Pathol. 5: 129-137.
    • (1975) Eur J For Pathol. , vol.5 , pp. 129-137
    • Hubbes, M.1
  • 52
    • 77955012211 scopus 로고    scopus 로고
    • Identification of transcripts up-regulated in asexual and sexual fruiting bodies of the Dutch elm disease pathogen Ophiostoma novo-ulmi
    • Jacobi V, Dufour J, Bouvet GF, Aoun M, Bernier L. 2010. Identification of transcripts up-regulated in asexual and sexual fruiting bodies of the Dutch elm disease pathogen Ophiostoma novo-ulmi. Can J Microbiol. 56:697-705.
    • (2010) Can J Microbiol. , vol.56 , pp. 697-705
    • Jacobi, V.1    Dufour, J.2    Bouvet, G.F.3    Aoun, M.4    Bernier, L.5
  • 53
    • 0033937624 scopus 로고    scopus 로고
    • In vitro toxicity of natural and designed peptides to tree pathogens and pollen
    • Jacobi V, Plourde A, Charest PJ, Hamelin RC. 2000. In vitro toxicity of natural and designed peptides to tree pathogens and pollen. Can J Bot. 78:455-461.
    • (2000) Can J Bot. , vol.78 , pp. 455-461
    • Jacobi, V.1    Plourde, A.2    Charest, P.J.3    Hamelin, R.C.4
  • 54
    • 23844525077 scopus 로고    scopus 로고
    • Repbase Update, a database of eukaryotic repetitive elements
    • Jurka J, et al. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogent Genome Res. 110:462-467.
    • (2005) Cytogent Genome Res. , vol.110 , pp. 462-467
    • Jurka, J.1
  • 55
  • 56
    • 77955274600 scopus 로고    scopus 로고
    • SMURF: Genomic mapping of fungal secondary metabolite clusters
    • Khaldi N, et al. 2010. SMURF: genomic mapping of fungal secondary metabolite clusters. Fungal Genet Biol. 47:736-741.
    • (2010) Fungal Genet Biol. , vol.47 , pp. 736-741
    • Khaldi, N.1
  • 57
    • 84874792776 scopus 로고    scopus 로고
    • Sequencing and annotation of the Ophiostoma ulmi genome
    • Khoshraftar S, et al. 2013. Sequencing and annotation of the Ophiostoma ulmi genome. BMC Genomics 14:162.
    • (2013) BMC Genomics , vol.14 , pp. 162
    • Khoshraftar, S.1
  • 58
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim D, et al. 2013. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14: R36.
    • (2013) Genome Biol. , vol.14 , pp. R36
    • Kim, D.1
  • 59
    • 34249734822 scopus 로고    scopus 로고
    • Gepard: A rapid and sensitive tool for creating dotplots on genome scale
    • Krumsiek J, Arnold R, Rattei T. 2007. Gepard: a rapid and sensitive tool for creating dotplots on genome scale. Bioinformatics 23: 1026-1028.
    • (2007) Bioinformatics , vol.23 , pp. 1026-1028
    • Krumsiek, J.1    Arnold, R.2    Rattei, T.3
  • 60
    • 0011155266 scopus 로고
    • Nutritional control of dimorphism in Ceratocystis ulmi
    • Kulkarni RK, Nickerson KW. 1981. Nutritional control of dimorphism in Ceratocystis ulmi. Exp Mycol. 5:148-154.
    • (1981) Exp Mycol. , vol.5 , pp. 148-154
    • Kulkarni, R.K.1    Nickerson, K.W.2
  • 61
    • 40849130099 scopus 로고    scopus 로고
    • A male-produced aggregation pheromone blend consisting of alkanediols, terpenoids, and an aromatic alcohol from the Cerambycid beetle Megacyllene caryae
    • Lacey ES, Moreira JA, Millar JG, Hanks LM. 2008. A male-produced aggregation pheromone blend consisting of alkanediols, terpenoids, and an aromatic alcohol from the Cerambycid beetle Megacyllene caryae. J Chem Ecol. 34:408-417.
    • (2008) J Chem Ecol. , vol.34 , pp. 408-417
    • Lacey, E.S.1    Moreira, J.A.2    Millar, J.G.3    Hanks, L.M.4
  • 62
    • 34250665888 scopus 로고    scopus 로고
    • RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
    • Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 3100-3108
    • Lagesen, K.1
  • 63
    • 84871363792 scopus 로고    scopus 로고
    • The cytochromes P450 of Grosmannia clavigera: Genome organization, phylogeny, and expression in response to pine host chemicals
    • Lah L, Haridas S, Bohlmann J, Breuil C. 2013. The cytochromes P450 of Grosmannia clavigera: genome organization, phylogeny, and expression in response to pine host chemicals. Fungal Genet Biol. 50:72-81.
    • (2013) Fungal Genet Biol. , vol.50 , pp. 72-81
    • Lah, L.1    Haridas, S.2    Bohlmann, J.3    Breuil, C.4
  • 64
    • 0001580671 scopus 로고
    • Higher plant terpenoids: A phytocentric overview of their ecological roles
    • Langenheim JH. 1994. Higher plant terpenoids: a phytocentric overview of their ecological roles. J Chem Ecol. 20:1223-1280.
    • (1994) J Chem Ecol. , vol.20 , pp. 1223-1280
    • Langenheim, J.H.1
  • 66
    • 78650097545 scopus 로고    scopus 로고
    • Tracing the origin of the fungal a1 domain places its ancestor in the HMG-box superfamily: Implication for fungal matingtype evolution
    • Martin T, et al. 2010. Tracing the origin of the fungal a1 domain places its ancestor in the HMG-box superfamily: implication for fungal matingtype evolution. PLoS One 5:e15199.
    • (2010) PLoS One , vol.5
    • Martin, T.1
  • 68
    • 28244439068 scopus 로고    scopus 로고
    • The pathogen causing Dutch elm disease makes host trees attract insect vectors
    • McLeod G, et al. 2005. The pathogen causing Dutch elm disease makes host trees attract insect vectors. Proc R Soc Lond B Biol Sci. 272: 2499-2503.
    • (2005) Proc R Soc Lond B Biol Sci. , vol.272 , pp. 2499-2503
    • McLeod, G.1
  • 69
    • 79960723888 scopus 로고    scopus 로고
    • Regulation of trichothecene biosynthesis in Fusarium: Recent advances and new insights
    • Merhej J, Richard-Forget F, Barreau C. 2011. Regulation of trichothecene biosynthesis in Fusarium: recent advances and new insights. Appl Microbiol Biotechnol. 91:519-528.
    • (2011) Appl Microbiol Biotechnol. , vol.91 , pp. 519-528
    • Merhej, J.1    Richard-Forget, F.2    Barreau, C.3
  • 70
    • 0036801315 scopus 로고    scopus 로고
    • Secreted protease from pathogenic fungi
    • Monod M, et al. 2002. Secreted protease from pathogenic fungi. Int JMed Microbiol. 292:405-419.
    • (2002) Int JMed Microbiol. , vol.292 , pp. 405-419
    • Monod, M.1
  • 71
    • 34547588704 scopus 로고    scopus 로고
    • KAAS: An automatic genome annotation and pathway reconstruction server
    • Moriya Y, Itoh M, Okuda S, Yoshizawa A, Kanehisa M. 2007. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35:W182-W185.
    • (2007) Nucleic Acids Res. , vol.35 , pp. W182-W185
    • Moriya, Y.1    Itoh, M.2    Okuda, S.3    Yoshizawa, A.4    Kanehisa, M.5
  • 72
    • 84908507946 scopus 로고    scopus 로고
    • Control of yeast-mycelium dimorphism in vitro in Dutch elm disease fungi by manipulation of specific external stimuli
    • Naruzawa ES, Bernier L. 2014. Control of yeast-mycelium dimorphism in vitro in Dutch elm disease fungi by manipulation of specific external stimuli. Fungal Biol. 118:872-884.
    • (2014) Fungal Biol. , vol.118 , pp. 872-884
    • Naruzawa, E.S.1    Bernier, L.2
  • 73
    • 33745177792 scopus 로고    scopus 로고
    • Cytochrome P450 nomenclature, 2004
    • Phillips IR, Shephard EA, editors. 2nd ed. Totowa (NJ): Humana Press
    • Nelson DR. 2006. Cytochrome P450 nomenclature, 2004. In: Phillips IR, Shephard EA, editors. Methods in molecular biology, Vol. 320: Cytochrome P450 protocols, 2nd ed. Totowa (NJ): Humana Press. p. 1-10.
    • (2006) Methods in Molecular Biology, Cytochrome P450 Protocols , vol.320 , pp. 1-10
    • Nelson, D.R.1
  • 74
    • 73249132581 scopus 로고    scopus 로고
    • The cytochrome P450 homepage
    • Nelson DR. 2009. The cytochrome P450 homepage. Hum Genomics. 4: 59-65.
    • (2009) Hum Genomics. , vol.4 , pp. 59-65
    • Nelson, D.R.1
  • 75
    • 34548397735 scopus 로고    scopus 로고
    • Transgenic American elmshows reduced Dutch elm disease symptoms and normal mycorrhizal colonization
    • Newhouse AE, Schrodt F, Liang H, Maynard CA, Powell WA. 2007. Transgenic American elmshows reduced Dutch elm disease symptoms and normal mycorrhizal colonization. Plant Cell Rep. 26:977-987.
    • (2007) Plant Cell Rep. , vol.26 , pp. 977-987
    • Newhouse, A.E.1    Schrodt, F.2    Liang, H.3    Maynard, C.A.4    Powell, W.A.5
  • 76
    • 84896137197 scopus 로고    scopus 로고
    • Plant antimicrobial peptides
    • Irving HR, Gehring C, editors Berlin (Germany): Springer-Verlag
    • Odintsova T, Egorov T. 2012. Plant antimicrobial peptides. In: Irving HR, Gehring C, editors. Plant signaling peptides. Signaling and communications in plants, Vol. 16. Berlin (Germany): Springer-Verlag. p. 107-133.
    • (2012) Plant Signaling Peptides. Signaling and Communications in Plants , vol.16 , pp. 107-133
    • Odintsova, T.1    Egorov, T.2
  • 77
    • 0036187423 scopus 로고    scopus 로고
    • Characterization of an extracellular serine protease of Fusarium eumartii and its action on pathogenesis related proteins
    • Olivieri F, Zanetti ME, Oliva CR, Covarrubias AA, Casalongué CA. 2002. Characterization of an extracellular serine protease of Fusarium eumartii and its action on pathogenesis related proteins. Eur J Plant Pathol. 108:63-72.
    • (2002) Eur J Plant Pathol. , vol.108 , pp. 63-72
    • Olivieri, F.1    Zanetti, M.E.2    Oliva, C.R.3    Covarrubias, A.A.4    Casalongué, C.A.5
  • 78
    • 25144511466 scopus 로고    scopus 로고
    • Cloning and sequence analysis of the MAT-B (MAT-2) genes from the three Dutch elm disease pathogens, Ophiostoma ulmi, O. Novo-ulmi, and O. Himal-ulmi
    • Paoletti M, Buck KW, Brasier CM. 2005. Cloning and sequence analysis of the MAT-B (MAT-2) genes from the three Dutch elm disease pathogens, Ophiostoma ulmi, O. novo-ulmi, and O. himal-ulmi. Mycol Res. 109:983-991.
    • (2005) Mycol Res. , vol.109 , pp. 983-991
    • Paoletti, M.1    Buck, K.W.2    Brasier, C.M.3
  • 79
    • 33645094669 scopus 로고    scopus 로고
    • Selective acquisition of novel mating type and vegetative incompatibility genes via interspecies gene transfer in the globally invading eukaryote Ophiostoma novoulmi
    • Paoletti M, Buck KW, Brasier CM. 2006. Selective acquisition of novel mating type and vegetative incompatibility genes via interspecies gene transfer in the globally invading eukaryote Ophiostoma novoulmi. Mol Ecol. 15:249-262.
    • (2006) Mol Ecol. , vol.15 , pp. 249-262
    • Paoletti, M.1    Buck, K.W.2    Brasier, C.M.3
  • 80
    • 80053345905 scopus 로고    scopus 로고
    • SignalP 4.0: Discriminating signal peptides from transmembrane regions
    • Petersen TN, Brunak S, von Heijne G, Nielsen H. 2011. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods. 8:785-786.
    • (2011) Nat Methods. , vol.8 , pp. 785-786
    • Petersen, T.N.1    Brunak, S.2    Von Heijne, G.3    Nielsen, H.4
  • 81
    • 0028165384 scopus 로고
    • Lack of association between tolerance to the elm phytoalexin mansonone e and virulence in Ophiostoma novo-ulmi
    • Proctor RH, Guries RP, Smalley EB. 1994. Lack of association between tolerance to the elm phytoalexin mansonone E and virulence in Ophiostoma novo-ulmi. Can J Bot. 72:1355-1364.
    • (1994) Can J Bot. , vol.72 , pp. 1355-1364
    • Proctor, R.H.1    Guries, R.P.2    Smalley, E.B.3
  • 82
    • 79955130314 scopus 로고    scopus 로고
    • Distribution of sterigmatocystin in filamentous fungi
    • Rank C, et al. 2011. Distribution of sterigmatocystin in filamentous fungi. Fungal Biol. 115:406-420.
    • (2011) Fungal Biol. , vol.115 , pp. 406-420
    • Rank, C.1
  • 83
    • 84859426282 scopus 로고    scopus 로고
    • MEROPS: The database of proteolytic enzymes, their substrates and inhibitors
    • Rawlings ND, Barrett AJ, Bateman A. 2012. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res. 40:D343-D350.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D343-D350
    • Rawlings, N.D.1    Barrett, A.J.2    Bateman, A.3
  • 84
    • 84924098845 scopus 로고    scopus 로고
    • Domesticated transposable element gene products in human cancer
    • Riordan JD, Dupuy AJ. 2013. Domesticated transposable element gene products in human cancer. Mob Genet Elements. 3:e26693.
    • (2013) Mob Genet Elements. , vol.3
    • Riordan, J.D.1    Dupuy, A.J.2
  • 85
    • 78149467816 scopus 로고    scopus 로고
    • Microbial oxidation of (-)-a-pinene to verbenol production by newly isolated strains
    • Rottava I, et al. 2010. Microbial oxidation of (-)-a-pinene to verbenol production by newly isolated strains. Appl Biochem Biotechnol. 162: 2221-2231.
    • (2010) Appl Biochem Biotechnol. , vol.162 , pp. 2221-2231
    • Rottava, I.1
  • 86
    • 0033823006 scopus 로고    scopus 로고
    • Molecular genetics of heterokaryon incompatibility in filamentous ascomycetes
    • Saupe SJ. 2000. Molecular genetics of heterokaryon incompatibility in filamentous ascomycetes. Microbiol Mol Biol Rev. 64:489-502.
    • (2000) Microbiol Mol Biol Rev. , vol.64 , pp. 489-502
    • Saupe, S.J.1
  • 87
    • 80053569870 scopus 로고    scopus 로고
    • The [Het-s] prion of Podospora anserina and its role in heterokaryon incompatibility
    • Saupe SJ. 2011. The [Het-s] prion of Podospora anserina and its role in heterokaryon incompatibility. Semin Cell Dev Biol. 22:460-468.
    • (2011) Semin Cell Dev Biol. , vol.22 , pp. 460-468
    • Saupe, S.J.1
  • 88
    • 0033661670 scopus 로고    scopus 로고
    • Vegetative incompatibility in filamentous fungi: Podospora and Neurospora provide some clues
    • Saupe SJ, Clavé C, Bé gueret J. 2000. Vegetative incompatibility in filamentous fungi: Podospora and Neurospora provide some clues. Curr Opin Microbiol. 3:608-612.
    • (2000) Curr Opin Microbiol. , vol.3 , pp. 608-612
    • Saupe, S.J.1    Clavé, C.2    Bé Gueret, J.3
  • 89
    • 23144460836 scopus 로고    scopus 로고
    • The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
    • Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686-W689.
    • (2005) Nucleic Acids Res. , vol.33 , pp. W686-W689
    • Schattner, P.1    Brooks, A.N.2    Lowe, T.M.3
  • 90
    • 84865598477 scopus 로고    scopus 로고
    • Inducibility of chemical defenses in Norway spruce bark is correlated with unsuccessful mass attacks by the spruce bark beetle
    • Schiebe C, et al. 2012. Inducibility of chemical defenses in Norway spruce bark is correlated with unsuccessful mass attacks by the spruce bark beetle. Oecologia 170:183-198.
    • (2012) Oecologia , vol.170 , pp. 183-198
    • Schiebe, C.1
  • 91
    • 20044382467 scopus 로고
    • Nitrogenous and carbohydrate compounds in the xylem sap of Ulmaceae species varying in resistance to Dutch elm disease
    • Singh D, Smalley EB. 1969a. Nitrogenous and carbohydrate compounds in the xylem sap of Ulmaceae species varying in resistance to Dutch elm disease. Can J Bot. 47:335-339.
    • (1969) Can J Bot. , vol.47 , pp. 335-339
    • Singh, D.1    Smalley, E.B.2
  • 92
    • 33947681525 scopus 로고
    • Nitrogenous compounds in the xylem sap of American elms with Dutch elm disease
    • Singh D, Smalley EB. 1969b. Nitrogenous compounds in the xylem sap of American elms with Dutch elm disease. Can J Bot. 47:1061-1065.
    • (1969) Can J Bot. , vol.47 , pp. 1061-1065
    • Singh, D.1    Smalley, E.B.2
  • 94
    • 33845665889 scopus 로고    scopus 로고
    • Dividing the large glycoside hydrolase family 13 into subfamilies: Towards improved functional annotations of a-amylase-related proteins
    • Stam MR, Danchin EGJ, Rancurel C, Coutinho PM, Henrissat B. 2006. Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of a-amylase-related proteins. Protein Eng Des Sel. 19:555-562.
    • (2006) Protein Eng des Sel. , vol.19 , pp. 555-562
    • Stam, M.R.1    Danchin, E.G.J.2    Rancurel, C.3    Coutinho, P.M.4    Henrissat, B.5
  • 95
    • 2942527473 scopus 로고    scopus 로고
    • Gene prediction with a hidden-Markov model and a new intron submodel
    • Stanke M, Waack S. 2003. Gene prediction with a hidden-Markov model and a new intron submodel. Bioinformatics 19:ii215-ii225.
    • (2003) Bioinformatics , vol.19 , pp. ii215-ii225
    • Stanke, M.1    Waack, S.2
  • 97
    • 0000779928 scopus 로고    scopus 로고
    • Biological roles for cerato-ulmin, a hydrophobin secreted by the elmpathogens, Ophiostoma ulmi and O
    • Temple B, Horgen PA. 2000. Biological roles for cerato-ulmin, a hydrophobin secreted by the elmpathogens, Ophiostoma ulmi and O. novoulmi. Mycologia 92:1-9.
    • (2000) Novoulmi. Mycologia , vol.92 , pp. 1-9
    • Temple, B.1    Horgen, P.A.2
  • 98
    • 0031214028 scopus 로고    scopus 로고
    • Cerato-ulmin, a hydrophobin secreted by the causal agents of Dutch elm disease, is a parasitic fitness factor
    • Temple B, Horgen PA, Bernier L, Hintz WE. 1997. Cerato-ulmin, a hydrophobin secreted by the causal agents of Dutch elm disease, is a parasitic fitness factor. Fungal Genet Biol. 22:39-53.
    • (1997) Fungal Genet Biol. , vol.22 , pp. 39-53
    • Temple, B.1    Horgen, P.A.2    Bernier, L.3    Hintz, W.E.4
  • 99
    • 57149099395 scopus 로고    scopus 로고
    • Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
    • Ter-Hovhannisyan V, Lomsadze A, Chernoff Y, BorodovskyM. 2008. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 18:1979-1990.
    • (2008) Genome Res. , vol.18 , pp. 1979-1990
    • Ter-Hovhannisyan, V.1    Lomsadze, A.2    Chernoff, Y.3    Borodovsky, M.4
  • 100
    • 33746496150 scopus 로고    scopus 로고
    • Significance of flavonoids in plant resistance: A review
    • Treutter D. 2006. Significance of flavonoids in plant resistance: a review. Environ Chem Lett. 4:147-157.
    • (2006) Environ Chem Lett. , vol.4 , pp. 147-157
    • Treutter, D.1
  • 101
    • 84928236719 scopus 로고    scopus 로고
    • Draft genome sequences of Diplodia sapinea, Ceratocystis manginecans, and Ceratocystis moniliformis
    • van der Nest MA, et al. 2014. Draft genome sequences of Diplodia sapinea, Ceratocystis manginecans, and Ceratocystis moniliformis. IMA Fungus 5:135-140.
    • (2014) IMA Fungus , vol.5 , pp. 135-140
    • Van Der Nest, M.A.1
  • 102
    • 85005347879 scopus 로고
    • Relative effectiveness of Scolytus scolytus, S. Multistriatus, and S. Kirschi as vectors of Dutch elm disease
    • Webber JF. 1990. Relative effectiveness of Scolytus scolytus, S. multistriatus, and S. kirschi as vectors of Dutch elm disease. Eur J For Pathol. 20: 184-192.
    • (1990) Eur J for Pathol. , vol.20 , pp. 184-192
    • Webber, J.F.1
  • 103
    • 36249023071 scopus 로고    scopus 로고
    • A unified classification system for eukaryotic transposable elements
    • Wicker T, et al. 2007. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 8:973-982.
    • (2007) Nat Rev Genet. , vol.8 , pp. 973-982
    • Wicker, T.1
  • 104
    • 84857685268 scopus 로고    scopus 로고
    • Both mating types in the heterothallic fungus Ophiostoma quercus contain MAT1-1 and MAT1-2 genes
    • Wilken PM, et al. 2012. Both mating types in the heterothallic fungus Ophiostoma quercus contain MAT1-1 and MAT1-2 genes. Fungal Biol. 116:427-437.
    • (2012) Fungal Biol. , vol.116 , pp. 427-437
    • Wilken, P.M.1
  • 105
    • 84919917658 scopus 로고    scopus 로고
    • Draft nuclear genome sequence for the plant pathogen, Ceratocystis fimbriata
    • Wilken PM, et al. 2013. Draft nuclear genome sequence for the plant pathogen, Ceratocystis fimbriata. IMA Fungus 4:357-358.
    • (2013) IMA Fungus , vol.4 , pp. 357-358
    • Wilken, P.M.1
  • 106
    • 38549097050 scopus 로고    scopus 로고
    • PHI-base update: Additions to the pathogen-host interaction database
    • Winnenberg R, et al. 2008. PHI-base update: additions to the pathogen-host interaction database. Nucleic Acids Res. 36: D572-D576.
    • (2008) Nucleic Acids Res. , vol.36 , pp. D572-D576
    • Winnenberg, R.1
  • 108
    • 8644249912 scopus 로고    scopus 로고
    • The control of mating type heterokaryon incompatibility by vib-1, a locus involved in het-c heterokaryon incompatibility in Neurospora crassa
    • Xiang Q, Glass LN. 2004. The control of mating type heterokaryon incompatibility by vib-1, a locus involved in het-c heterokaryon incompatibility in Neurospora crassa. Fungal Genet Biol. 41: 1063-1076.
    • (2004) Fungal Genet Biol. , vol.41 , pp. 1063-1076
    • Xiang, Q.1    Glass, L.N.2
  • 109
    • 84870529846 scopus 로고    scopus 로고
    • Current understanding on aflatoxin biosynthesis and future perspective in reducing aflatoxin contamination
    • Yu J. 2012. Current understanding on aflatoxin biosynthesis and future perspective in reducing aflatoxin contamination. Toxins 4:1024-1057.
    • (2012) Toxins , vol.4 , pp. 1024-1057
    • Yu, J.1
  • 110
    • 12144286398 scopus 로고    scopus 로고
    • Clustered pathway genes in aflatoxin biosynthesis
    • Yu J, et al. 2004. Clustered pathway genes in aflatoxin biosynthesis. Appl Environ Microbiol. 70:1253-1262.
    • (2004) Appl Environ Microbiol. , vol.70 , pp. 1253-1262
    • Yu, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.