-
1
-
-
84898761737
-
Atomic model of the F420-reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detector
-
Allegretti M., Mills D.J., McMullan G., Kuhlbrandt W., Vonck J. Atomic model of the F420-reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detector. Elife (Cambridge) 2014, 3:e01963.
-
(2014)
Elife (Cambridge)
, vol.3
-
-
Allegretti, M.1
Mills, D.J.2
McMullan, G.3
Kuhlbrandt, W.4
Vonck, J.5
-
2
-
-
84897000112
-
Structure of the yeast mitochondrial large ribosomal subunit
-
Amunts A., Brown A., Bai X.C., Llacer J.L., Hussain T., Emsley P., Long F., Murshudov G., Scheres S.H., Ramakrishnan V. Structure of the yeast mitochondrial large ribosomal subunit. Science 2014, 343:1485-1489.
-
(2014)
Science
, vol.343
, pp. 1485-1489
-
-
Amunts, A.1
Brown, A.2
Bai, X.C.3
Llacer, J.L.4
Hussain, T.5
Emsley, P.6
Long, F.7
Murshudov, G.8
Scheres, S.H.9
Ramakrishnan, V.10
-
3
-
-
84878580683
-
Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles
-
Bai X.C., Fernandez I.S., McMullan G., Scheres S.H. Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles. eLife 2013, 2:e00461.
-
(2013)
eLife
, vol.2
-
-
Bai, X.C.1
Fernandez, I.S.2
McMullan, G.3
Scheres, S.H.4
-
4
-
-
84880659509
-
Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling
-
Baker M.L., Hryc C.F., Zhang Q., Wu W., Jakana J., Haase-Pettingell C., Afonine P.V., Adams P.D., King J.A., Jiang W., Chiu W. Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling. Proc. Natl. Acad. Sci. USA 2013, 110:12301-12306.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 12301-12306
-
-
Baker, M.L.1
Hryc, C.F.2
Zhang, Q.3
Wu, W.4
Jakana, J.5
Haase-Pettingell, C.6
Afonine, P.V.7
Adams, P.D.8
King, J.A.9
Jiang, W.10
Chiu, W.11
-
5
-
-
84862783740
-
Beam-induced motion of vitrified specimen on holey carbon film
-
Brilot A.F., Chen J.Z., Cheng A., Pan J., Harrison S.C., Potter C.S., Carragher B., Henderson R., Grigorieff N. Beam-induced motion of vitrified specimen on holey carbon film. J. Struct. Biol. 2012, 177:630-637.
-
(2012)
J. Struct. Biol.
, vol.177
, pp. 630-637
-
-
Brilot, A.F.1
Chen, J.Z.2
Cheng, A.3
Pan, J.4
Harrison, S.C.5
Potter, C.S.6
Carragher, B.7
Henderson, R.8
Grigorieff, N.9
-
6
-
-
84868573207
-
Movies of ice-embedded particles enhance resolution in electron cryo-microscopy
-
Campbell M.G., Cheng A., Brilot A.F., Moeller A., Lyumkis D., Veesler D., Pan J., Harrison S.C., Potter C.S., Carragher B., Grigorieff N. Movies of ice-embedded particles enhance resolution in electron cryo-microscopy. Structure 2012, 20:1823-1828.
-
(2012)
Structure
, vol.20
, pp. 1823-1828
-
-
Campbell, M.G.1
Cheng, A.2
Brilot, A.F.3
Moeller, A.4
Lyumkis, D.5
Veesler, D.6
Pan, J.7
Harrison, S.C.8
Potter, C.S.9
Carragher, B.10
Grigorieff, N.11
-
7
-
-
84889594608
-
TRPV1 structures in distinct conformations reveal activation mechanisms
-
Cao E., Liao M., Cheng Y., Julius D. TRPV1 structures in distinct conformations reveal activation mechanisms. Nature 2013, 504:113-118.
-
(2013)
Nature
, vol.504
, pp. 113-118
-
-
Cao, E.1
Liao, M.2
Cheng, Y.3
Julius, D.4
-
8
-
-
84880607763
-
High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy
-
Chen S., McMullan G., Faruqi A.R., Murshudov G.N., Short J.M., Scheres S.H., Henderson R. High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy. Ultramicroscopy 2013, 135:24-35.
-
(2013)
Ultramicroscopy
, vol.135
, pp. 24-35
-
-
Chen, S.1
McMullan, G.2
Faruqi, A.R.3
Murshudov, G.N.4
Short, J.M.5
Scheres, S.H.6
Henderson, R.7
-
9
-
-
77950456761
-
4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement
-
Cong Y., Baker M.L., Jakana J., Woolford D., Miller E.J., Reissmann S., Kumar R.N., Redding-Johanson A.M., Batth T.S., Mukhopadhyay A., Ludtke S.J., Frydman J., Chiu W. 4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement. Proc. Natl. Acad. Sci. USA 2010, 107:4967-4972.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 4967-4972
-
-
Cong, Y.1
Baker, M.L.2
Jakana, J.3
Woolford, D.4
Miller, E.J.5
Reissmann, S.6
Kumar, R.N.7
Redding-Johanson, A.M.8
Batth, T.S.9
Mukhopadhyay, A.10
Ludtke, S.J.11
Frydman, J.12
Chiu, W.13
-
10
-
-
84900435661
-
Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome
-
Fernandez I.S., Bai X.C., Murshudov G., Scheres S.H., Ramakrishnan V. Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome. Cell 2014, 157:823-831.
-
(2014)
Cell
, vol.157
, pp. 823-831
-
-
Fernandez, I.S.1
Bai, X.C.2
Murshudov, G.3
Scheres, S.H.4
Ramakrishnan, V.5
-
11
-
-
79952438103
-
Precise beam-tilt alignment and collimation are required to minimize the phase error associated with coma in high-resolution cryo-EM
-
Glaeser R.M., Typke D., Tiemeijer P.C., Pulokas J., Cheng A. Precise beam-tilt alignment and collimation are required to minimize the phase error associated with coma in high-resolution cryo-EM. J. Struct. Biol. 2011, 174:1-10.
-
(2011)
J. Struct. Biol.
, vol.174
, pp. 1-10
-
-
Glaeser, R.M.1
Typke, D.2
Tiemeijer, P.C.3
Pulokas, J.4
Cheng, A.5
-
12
-
-
1242319463
-
The refined structure of Nudaurelia capensis omega virus reveals control elements for a T=4 capsid maturation
-
Helgstrand C., Munshi S., Johnson J.E., Liljas L. The refined structure of Nudaurelia capensis omega virus reveals control elements for a T=4 capsid maturation. Virology 2004, 318:192-203.
-
(2004)
Virology
, vol.318
, pp. 192-203
-
-
Helgstrand, C.1
Munshi, S.2
Johnson, J.E.3
Liljas, L.4
-
13
-
-
84897000286
-
Biochemistry. The resolution revolution
-
Kuhlbrandt W. Biochemistry. The resolution revolution. Science 2014, 343:1443-1444.
-
(2014)
Science
, vol.343
, pp. 1443-1444
-
-
Kuhlbrandt, W.1
-
14
-
-
60649103238
-
Appion: an integrated, database-driven pipeline to facilitate EM image processing
-
Lander G.C., Stagg S.M., Voss N.R., Cheng A., Fellmann D., Pulokas J., Yoshioka C., Irving C., Mulder A., Lau P.W., Lyumkis D., Potter C.S., Carragher B. Appion: an integrated, database-driven pipeline to facilitate EM image processing. J. Struct. Biol. 2009, 166:95-102.
-
(2009)
J. Struct. Biol.
, vol.166
, pp. 95-102
-
-
Lander, G.C.1
Stagg, S.M.2
Voss, N.R.3
Cheng, A.4
Fellmann, D.5
Pulokas, J.6
Yoshioka, C.7
Irving, C.8
Mulder, A.9
Lau, P.W.10
Lyumkis, D.11
Potter, C.S.12
Carragher, B.13
-
15
-
-
84887252893
-
Influence of electron dose rate on electron counting images recorded with the K2 camera
-
Li X., Zheng S.Q., Egami K., Agard D.A., Cheng Y. Influence of electron dose rate on electron counting images recorded with the K2 camera. J. Struct. Biol. 2013, 184:251-260.
-
(2013)
J. Struct. Biol.
, vol.184
, pp. 251-260
-
-
Li, X.1
Zheng, S.Q.2
Egami, K.3
Agard, D.A.4
Cheng, Y.5
-
16
-
-
84880848354
-
Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM
-
Li X., Mooney P., Zheng S., Booth C.R., Braunfeld M.B., Gubbens S., Agard D.A., Cheng Y. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nat. Methods 2013, 10:584-590.
-
(2013)
Nat. Methods
, vol.10
, pp. 584-590
-
-
Li, X.1
Mooney, P.2
Zheng, S.3
Booth, C.R.4
Braunfeld, M.B.5
Gubbens, S.6
Agard, D.A.7
Cheng, Y.8
-
17
-
-
84889607320
-
Structure of the TRPV1 ion channel determined by electron cryo-microscopy
-
Liao M., Cao E., Julius D., Cheng Y. Structure of the TRPV1 ion channel determined by electron cryo-microscopy. Nature 2013, 504:107-112.
-
(2013)
Nature
, vol.504
, pp. 107-112
-
-
Liao, M.1
Cao, E.2
Julius, D.3
Cheng, Y.4
-
18
-
-
84904560883
-
Three-dimensional structure of human gamma-secretase
-
Lu P., Bai X.C., Ma D., Xie T., Yan C., Sun L., Yang G., Zhao Y., Zhou R., Scheres S.H., Shi Y. Three-dimensional structure of human gamma-secretase. Nature 2014.
-
(2014)
Nature
-
-
Lu, P.1
Bai, X.C.2
Ma, D.3
Xie, T.4
Yan, C.5
Sun, L.6
Yang, G.7
Zhao, Y.8
Zhou, R.9
Scheres, S.H.10
Shi, Y.11
-
19
-
-
80455160305
-
Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy
-
Milazzo A.C., Cheng A., Moeller A., Lyumkis D., Jacovetty E., Polukas J., Ellisman M.H., Xuong N.H., Carragher B., Potter C.S. Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy. J. Struct. Biol. 2011, 176:404-408.
-
(2011)
J. Struct. Biol.
, vol.176
, pp. 404-408
-
-
Milazzo, A.C.1
Cheng, A.2
Moeller, A.3
Lyumkis, D.4
Jacovetty, E.5
Polukas, J.6
Ellisman, M.H.7
Xuong, N.H.8
Carragher, B.9
Potter, C.S.10
-
20
-
-
0030576341
-
The 2.8 A structure of a T=4 animal virus and its implications for membrane translocation of RNA
-
Munshi S., Liljas L., Cavarelli J., Bomu W., McKinney B., Reddy V., Johnson J.E. The 2.8 A structure of a T=4 animal virus and its implications for membrane translocation of RNA. J. Mol. Biol. 1996, 261:1-10.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 1-10
-
-
Munshi, S.1
Liljas, L.2
Cavarelli, J.3
Bomu, W.4
McKinney, B.5
Reddy, V.6
Johnson, J.E.7
-
21
-
-
84888064039
-
Quantitative characterization of electron detectors for transmission electron microscopy
-
Ruskin R.S., Yu Z., Grigorieff N. Quantitative characterization of electron detectors for transmission electron microscopy. J. Struct. Biol. 2013, 184:385-393.
-
(2013)
J. Struct. Biol.
, vol.184
, pp. 385-393
-
-
Ruskin, R.S.1
Yu, Z.2
Grigorieff, N.3
-
22
-
-
84855818650
-
A Bayesian view on cryo-EM structure determination
-
Scheres S.H. A Bayesian view on cryo-EM structure determination. J. Mol. Biol. 2012, 415:406-418.
-
(2012)
J. Mol. Biol.
, vol.415
, pp. 406-418
-
-
Scheres, S.H.1
-
23
-
-
84868444740
-
RELION: implementation of a Bayesian approach to cryo-EM structure determination
-
Scheres S.H. RELION: implementation of a Bayesian approach to cryo-EM structure determination. J. Struct. Biol. 2012, 180:519-530.
-
(2012)
J. Struct. Biol.
, vol.180
, pp. 519-530
-
-
Scheres, S.H.1
-
24
-
-
84920942671
-
Beam-induced motion correction for sub-megadalton cryo-EM particles
-
Scheres S.H. Beam-induced motion correction for sub-megadalton cryo-EM particles. Elife 2014, 3:e03665. 10.7554/eLife.03665.
-
(2014)
Elife
, vol.3
-
-
Scheres, S.H.1
-
25
-
-
84866078359
-
Prevention of overfitting in cryo-EM structure determination
-
Scheres S.H., Chen S. Prevention of overfitting in cryo-EM structure determination. Nat. Methods 2012, 9:853-854.
-
(2012)
Nat. Methods
, vol.9
, pp. 853-854
-
-
Scheres, S.H.1
Chen, S.2
-
26
-
-
44949165726
-
Image processing for electron microscopy single-particle analysis using XMIPP
-
Scheres S.H., Nunez-Ramirez R., Sorzano C.O., Carazo J.M., Marabini R. Image processing for electron microscopy single-particle analysis using XMIPP. Nat. Protoc. 2008, 3:977-990.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 977-990
-
-
Scheres, S.H.1
Nunez-Ramirez, R.2
Sorzano, C.O.3
Carazo, J.M.4
Marabini, R.5
-
27
-
-
84880273391
-
Noise models and cryo-EM drift correction with a direct-electron camera
-
Shigematsu H., Sigworth F.J. Noise models and cryo-EM drift correction with a direct-electron camera. Ultramicroscopy 2013, 131:61-69.
-
(2013)
Ultramicroscopy
, vol.131
, pp. 61-69
-
-
Shigematsu, H.1
Sigworth, F.J.2
-
28
-
-
77953710827
-
A clustering approach to multireference alignment of single-particle projections in electron microscopy
-
Sorzano C.O., Bilbao-Castro J.R., Shkolnisky Y., Alcorlo M., Melero R., Caffarena-Fernandez G., Li M., Xu G., Marabini R., Carazo J.M. A clustering approach to multireference alignment of single-particle projections in electron microscopy. J. Struct. Biol. 2010, 171:197-206.
-
(2010)
J. Struct. Biol.
, vol.171
, pp. 197-206
-
-
Sorzano, C.O.1
Bilbao-Castro, J.R.2
Shkolnisky, Y.3
Alcorlo, M.4
Melero, R.5
Caffarena-Fernandez, G.6
Li, M.7
Xu, G.8
Marabini, R.9
Carazo, J.M.10
-
29
-
-
20544468931
-
Automated molecular microscopy: the new Leginon system
-
Suloway C., Pulokas J., Fellmann D., Cheng A., Guerra F., Quispe J., Stagg S., Potter C.S., Carragher B. Automated molecular microscopy: the new Leginon system. J. Struct. Biol. 2005, 151:41-60.
-
(2005)
J. Struct. Biol.
, vol.151
, pp. 41-60
-
-
Suloway, C.1
Pulokas, J.2
Fellmann, D.3
Cheng, A.4
Guerra, F.5
Quispe, J.6
Stagg, S.7
Potter, C.S.8
Carragher, B.9
-
30
-
-
84887235046
-
Maximizing the potential of electron cryomicroscopy data collected using direct detectors
-
Veesler D., Campbell M.G., Cheng A., Fu C.Y., Murez Z., Johnson J.E., Potter C.S., Carragher B. Maximizing the potential of electron cryomicroscopy data collected using direct detectors. J. Struct. Biol. 2013, 184:193-202.
-
(2013)
J. Struct. Biol.
, vol.184
, pp. 193-202
-
-
Veesler, D.1
Campbell, M.G.2
Cheng, A.3
Fu, C.Y.4
Murez, Z.5
Johnson, J.E.6
Potter, C.S.7
Carragher, B.8
-
31
-
-
84903310310
-
Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution
-
Voorhees R.M., Fernandez I.S., Scheres S.H., Hegde R.S. Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution. Cell 2014, 157:1632-1643.
-
(2014)
Cell
, vol.157
, pp. 1632-1643
-
-
Voorhees, R.M.1
Fernandez, I.S.2
Scheres, S.H.3
Hegde, R.S.4
-
32
-
-
77950914670
-
Subunit interactions in bovine papillomavirus
-
Wolf M., Garcea R.L., Grigorieff N., Harrison S.C. Subunit interactions in bovine papillomavirus. Proc. Natl. Acad. Sci. USA 2010, 107:6298-6303.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 6298-6303
-
-
Wolf, M.1
Garcea, R.L.2
Grigorieff, N.3
Harrison, S.C.4
-
33
-
-
84905080837
-
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine
-
Wong W., Bai X.C., Brown A., Fernandez I.S., Hanssen E., Condron M., Tan Y.H., Baum J., Scheres S.H. Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. Elife (Cambridge) 2014, e03080.
-
(2014)
Elife (Cambridge)
-
-
Wong, W.1
Bai, X.C.2
Brown, A.3
Fernandez, I.S.4
Hanssen, E.5
Condron, M.6
Tan, Y.H.7
Baum, J.8
Scheres, S.H.9
-
34
-
-
41149086034
-
Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction
-
Zhang X., Settembre E., Xu C., Dormitzer P.R., Bellamy R., Harrison S.C., Grigorieff N. Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction. Proc. Natl. Acad. Sci. USA 2008, 105:1867-1872.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 1867-1872
-
-
Zhang, X.1
Settembre, E.2
Xu, C.3
Dormitzer, P.R.4
Bellamy, R.5
Harrison, S.C.6
Grigorieff, N.7
-
35
-
-
84872048730
-
Cryo-EM structure of the mature dengue virus at 3.5-A resolution
-
Zhang X., Ge P., Yu X., Brannan J.M., Bi G., Zhang Q., Schein S., Zhou Z.H. Cryo-EM structure of the mature dengue virus at 3.5-A resolution. Nat. Struct. Mol. Biol. 2013, 20:105-110.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 105-110
-
-
Zhang, X.1
Ge, P.2
Yu, X.3
Brannan, J.M.4
Bi, G.5
Zhang, Q.6
Schein, S.7
Zhou, Z.H.8
-
36
-
-
84890467275
-
A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at resolution
-
Zhang X., Guo H., Jin L., Czornyj E., Hodes A., Hui W.H., Nieh A.W., Miller J.F., Zhou Z.H. A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at resolution. Elife 2013, 2:e01299.
-
(2013)
Elife
, vol.2
-
-
Zhang, X.1
Guo, H.2
Jin, L.3
Czornyj, E.4
Hodes, A.5
Hui, W.H.6
Nieh, A.W.7
Miller, J.F.8
Zhou, Z.H.9
|