The 2.8 Å structure of a T = 4 animal virus and its implications for membrane translocation of RNA

Journal of Molecular Biology

Volumn 261, Issue 1, 1996, Pages 1-10

  Munshi, Sanjeev ^a,b   Liljas, Lars ^a,c   Cavarelli, Jean ^a,d   Bomu, Wu ^a,e   McKinney, Bonnie ^a   Reddy, Vijay ^a,f   Johnson, John E ^a,f  

^a PURDUE UNIVERSITY   (United States)

^b MERCK RESEARCH LABORATORIES   (United States)

^c UPPSALA UNIVERSITY   (Sweden)

^d INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^e INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^f SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

Ig fold; Jelly roll; Membrane translocation; Quasi equivalence; Tetraviruses; Viruses

Indexed keywords

VIRUS PROTEIN; VIRUS RNA; CAPSID PROTEIN; COAT PROTEIN, NUDAURELIA CAPENSIS OMEGA VIRUS; FUNGAL PROTEIN; NUDC PROTEIN, EMERICELLA NIDULANS;

AMINO ACID SEQUENCE; ARTICLE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; RNA TRANSPORT; RNA VIRUS; VIRUS CELL INTERACTION; VIRUS GENE; VIRUS MORPHOLOGY; CELL MEMBRANE; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; HYDROGEN BOND; INSECT VIRUS; LIPID BILAYER; METABOLISM; MOLECULAR EVOLUTION; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; TRANSPORT AT THE CELLULAR LEVEL; ULTRASTRUCTURE; VIRUS CAPSID; X RAY CRYSTALLOGRAPHY;

ANIMALIA; ENTEROBACTERIA PHAGE T4; RNA VIRUSES;

BIOLOGICAL TRANSPORT; CAPSID; CAPSID PROTEINS; CELL MEMBRANE; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; EVOLUTION, MOLECULAR; FUNGAL PROTEINS; HYDROGEN BONDING; INSECT VIRUSES; LIPID BILAYERS; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RNA VIRUSES; RNA, VIRAL;

EID: 0030576341     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0437     Document Type: Editorial

References (30)

1. Agrawal, D. & Johnson, J. E. (1992). Sequence and analysis of the capsid protein of Nudaurelia capensis ω virus, an insect virus with T = 4 icosahedral symmetry. Virology, 190, 868-814.
2. Agrawal, D. & Johnson, J. E. (1995). Assembly of the T = 4 Nudaurelia capensis omega virus capsid protein, post-translational cleavage, and specific encapsidation of its mRNA in a baculovirus expression system. Virology, 207, 89-97.
3. Bork, P., Holm, L. & Sander, C. (1994). The immunoglobulin fold: structural classification, sequence patterns and common core. J. Mol. Biol. 242, 309-320.
4. Brünger, A. T., Kuriyan, J. & Karplus, M. (1987). Cystallographic R factor refinement by molecular dynamics. Science, 235, 458-460.
5. Bullogh, P. A., Hughson, F. M., Skehel, J. & Wiley, D. (1994). Structure of influenza haemagglutinin at the pH of membrane fusion. Nature, 371, 37-43.
6. Carr, C. & Kim, P. (1993). A spring-loaded mechanism for the conformational change of influenza hemagglutinin. Cell, 73, 823-832.
7. Casasnovas, J. & Springer, T. (1994). Pathway of rhinovirus disruption by soluble intercellular adhesion molecule 1 (ICAM-1): an intermediate in which ICAM-1 is bound and RNA is released. J. Virol. 68, 5882-5889.
8. Cavarelli, J., Bomu, W., Liljas, L., Kim, S., Minor, W., Munshi, S., Muchmore, S., Schmidt, T. & Johnson, J. E. (1991). Crystallization and preliminary structure analysis of an insect virus with T = 4 quasi-symmetry: Nudaurelia capensis ω virus. Acta Crystallog. sect. B, 47, 23-29.
9. Chen, Z., Stauffacher, C., Li, Y., Schmidt, T., Bomu, W., Kamer, G., Shanks, M., Lomonossoff, G. & Johnson, J. E. (1989). Protein-RNA interactions in an icosahedral virus at 3.0 Å resolution. Science, 245, 154-159.
10. Cheng, R. H., Reddy, V. S., Olson, N. H., Fisher, A. J., Baker, T. S. & Johnson, J. E. (1994). Functional implications of quasi-equivalence in a T = 3 icosahedral animal virus established by cryo-electron microscopy and X-ray crystal. Structure, 2, 271-282.
11. Cornea-Hasegan, M. A., Zhang, Z., Lynch, R. E., Marinescu, D. C., Hadfield, A., Muckelbauer, J. K., Munshi, S., Tong, L. & Rossmann, M. (1995). Phase refinement and extension by means of non-crystallographic symmetry averaging using parallel computers. Acta Crystallog. sect. D, 51, 749-759.
12. Crowell, R. L. & Landau, B. J. (1983). Receptors in the initiation of picornavirus infections. Compreh. Virol. 18, 1-40.
13. Fisher, A. & Johnson, J. E. (1993). Ordered duplex RNA controls capsid architecture in an icosahedral animal virus. Nature, 361, 176-179.
14. Pricks, C. E. & Hogle, J. M. (1990). Cell-induced conformational change in poliovirus: externalization of the amino terminus of VP1 is responsible for liposome binding. J. Virol. 64, 1934-1945.
15. Gallagher, T. M. & Rueckert, R. R. (1988). Assembly-dependent maturation cleavage in provirions of a small icosahedral insect ribovirus. J. Virol. 62, 3399-3406.
16. Hosur, M. V., Schmidt, T., Tucker, R. C., Johnson, J. E., Gallagher, T. M., Selling B. H. & Rueckert, R. R. (1987). Structure of an insect virus at 3.0 A resolution. Proteins: Struct. Funct. Genet. 2, 167-176.
17. Johnson, J. E., Munshi, S., Liljas, L., Agrawal, D., Olson, N., Reddy, V., Fisher, A., McKinney, B., Schmidt, T. & Baker, T. S. (1994). Comparative studies of T = 3 and T = 4 icosahedral RNA insect viruses. Arch. Virol. 9, 497-512.
18. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. (1991). Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallog. sect. A, 47, 110-119.
19. Kraulis, P. (1991). MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24, 946-950.
20. Lonberg-Holm, K. & Philipson, L. (1974). Early Interactions Between Animal Viruses and Cells. Monographs in Virology (Melnick, J. L., ed.), vol. 9, S. Karger, Basel, Switzerland.
21. Pearson, R. H. & Pascher, I. (1979). The molecular structure of lecithin dihydrate. Nature, 281, 499-501.
22. Rey, F. A., Heinz, F. X., Mandl, C., Kunz, C. & Harrison, S. C. (1995). The envelope glycoprotein from tick-borne encephalitis virus at 2 Å resolution. Nature, 375, 291-298.
23. Roenhorst, J. W., Verduin, B. J. M. & Goldbach, R. (1989). Virus-ribosome complexes from cell-free translation systems supplemented with cowpea chlorotic mottle virus particles. Virology, 168, 138-146.
24. Rossmann, M. G. (1994). Viral cell recognition and entry. Protein Sci. 3, 1712-1725.
25. Rossmann, M. G. & Johnson, J. E. (1989). Icosahedral RNA virus structure. Annu. Rev. Biochem. 58, 533-573.
26. Rossmann, M. G., McKenna, R., Tong, L., Xia, D., Dai, J., Wu, H. & Choi, H. (1992). Molecular replacement real-space averaging. J. Appl. Crystallog. 25, 166-180.
27. Rueckert, R. (1990). Picornaviridae and their replication. In Virology, second edition, (Fields, B. N. et al., eds), pp. 507-548, Raven Press Ltd, New York.
28. Smith, T. J. (1993). MACINPLOTII - an updated program to display electron density and atomic models on the Macintosh personal computer. J. Appl. Crystallog. 26, 496-498.
29. Speir, J. A., Munshi, S., Wang, G., Baker, T. S. & Johnson, J. E. (1995). Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo electron microscopy. Structure, 3, 63-78.
30. Zlotnick, A., Reddy, V. S., Dasgupta, R., Schneemann, A., Ray, W. J., Jr, Rueckert, R. R. & Johnson, J. E. (1994). Capsid assembly in a family of animal viruses primes an autoproteolytic maturation that depends on a single aspartic acid residue. J. Biol. Chem. 29, 13680-13684.