Profile hidden Markov models for the detection of viruses within metagenomic sequence data

PLoS ONE

Volumn 9, Issue 8, 2014, Pages

  Skewes Cox, Peter ^a,b,c   Sharpton, Thomas J ^a,d   Pollard, Katherine S ^a   DeRisi, Joseph L ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^c NOVARTIS INSTITUTES FOR BIOMEDICAL RESEARCH   (United States)

^d OREGON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; DNA MICROARRAY; DNA SEQUENCE; GENE AMPLIFICATION; GENE SEQUENCE; HIDDEN MARKOV MODEL; METAGENOMICS; MUTATION RATE; NONHUMAN; PATHOGENESIS; POLYMERASE CHAIN REACTION; RECOGNITION; RNA SEQUENCE; RNA VIRUS; SEQUENCE ALIGNMENT; SEROLOGY; VALIDATION PROCESS; VIRUS DETECTION; BIOLOGY; COMPUTER PROGRAM; GENETICS; HUMAN; PROBABILITY; PROCEDURES; VIRUS;

COMPUTATIONAL BIOLOGY; HUMANS; MARKOV CHAINS; METAGENOMICS; SEQUENCE ALIGNMENT; SOFTWARE; VIRUSES;

EID: 84927160004     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0105067     Document Type: Article

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