Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource

BMC Bioinformatics

Volumn 13, Issue 1, 2012, Pages

  Sharpton, Thomas J ^a   Jospin, Guillaume ^b   Wu, Dongying ^b,f   Langille, Morgan G I ^c   Pollard, Katherine S ^a,d   Eisen, Jonathan A ^b,e,f  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c DALHOUSIE UNIVERSITY   (Canada)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e UNIVERSITY OF CALIFORNIA   (United States)

^f DOE JOINT GENOME INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL DATA; COMPUTATIONAL RESOURCES; FULLY AUTOMATED; GENOME SEQUENCING; GENOME SEQUENCING PROJECTS; GLOBAL ALIGNMENT; HIGH-THROUGHPUT; HOMOLOGOUS PROTEINS; IDENTIFICATION OF PROTEINS; ITERATIVE CLUSTERING; METAGENOMES; MULTIPLE SEQUENCE ALIGNMENTS; NEW APPROACHES; NOVEL PROTEINS; PHYLOGENETIC TREES; PROTEIN FAMILY; PROTEIN SEQUENCES; QUALITY METRICS; RAPID IDENTIFICATION; SOURCE CODES;

DATABASE SYSTEMS; DNA SEQUENCES; ELECTRIC NETWORK TOPOLOGY; GENES; HIDDEN MARKOV MODELS; INFORMATION MANAGEMENT;

PROTEINS;

PROTEIN;

ARTICLE; CLASSIFICATION; CLUSTER ANALYSIS; GENETICS; GENOMICS; METHODOLOGY; MOLECULAR GENETICS; PHYLOGENY; PROTEIN DATABASE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

CLUSTER ANALYSIS; DATABASES, PROTEIN; GENOMICS; MOLECULAR SEQUENCE ANNOTATION; PHYLOGENY; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 84867294452     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-13-264     Document Type: Article

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