-
1
-
-
0023637447
-
Genome similarities between plant and animal RNA viruses
-
Goldbach R. Genome similarities between plant and animal RNA viruses. Microbiol Sci. 1987;4(7):197-202.
-
(1987)
Microbiol Sci
, vol.4
, Issue.7
, pp. 197-202
-
-
Goldbach, R.1
-
2
-
-
0027504136
-
Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences
-
Koonin EV, Dolja VV. Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol. 1993;28(5):375-430. doi:10.3109/10409239309078440.
-
(1993)
Crit Rev Biochem Mol Biol
, vol.28
, Issue.5
, pp. 375-430
-
-
Koonin, E.V.1
Dolja, V.V.2
-
4
-
-
84862642115
-
Non-canonical translation in RNA viruses
-
Firth AE, Brierley I. Non-canonical translation in RNA viruses. J Gen Virol. 2012;93(Pt 7):1385-409. 10.1099/vir. 0.042499-0.
-
(2012)
J Gen Virol
, vol.93
, pp. 1385-1409
-
-
Firth, A.E.1
Brierley, I.2
-
5
-
-
83855162132
-
Conventional and unconventional mechanisms for capping viral mRNA
-
Decroly E, Ferron F, Lescar J, Canard B. Conventional and unconventional mechanisms for capping viral mRNA. Nat Rev Microbiol. 2012;10(1):51-65. 10.1038/nrmicro2675.
-
(2012)
Nat Rev Microbiol
, vol.10
, Issue.1
, pp. 51-65
-
-
Decroly, E.1
Ferron, F.2
Lescar, J.3
Canard, B.4
-
6
-
-
0028833053
-
Reaction in alphavirus mRNA capping: formation of a covalent complex of nonstructural protein nsP1 with 7-methyl-GMP
-
Ahola T, Kaariainen L. Reaction in alphavirus mRNA capping: formation of a covalent complex of nonstructural protein nsP1 with 7-methyl-GMP. Proc Natl Acad Sci U S A. 1995;92(2):507-11.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, Issue.2
, pp. 507-511
-
-
Ahola, T.1
Kaariainen, L.2
-
7
-
-
0026793857
-
Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses
-
Rozanov MN, Koonin EV, Gorbalenya AE. Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. J Gen Virol. 1992;73(Pt 8):2129-34.
-
(1992)
J Gen Virol
, vol.73
, pp. 2129-2134
-
-
Rozanov, M.N.1
Koonin, E.V.2
Gorbalenya, A.E.3
-
8
-
-
0028173041
-
Expression of Semliki Forest virus nsP1-specific methyltransferase in insect cells and in Escherichia coli
-
Laakkonen P, Hyvonen M, Peranen J, Kaariainen L. Expression of Semliki Forest virus nsP1-specific methyltransferase in insect cells and in Escherichia coli. J Virol. 1994;68(11):7418-25.
-
(1994)
J Virol
, vol.68
, Issue.11
, pp. 7418-7425
-
-
Laakkonen, P.1
Hyvonen, M.2
Peranen, J.3
Kaariainen, L.4
-
9
-
-
0024328925
-
Association of the Sindbis virus RNA methyltransferase activity with the nonstructural protein nsP1
-
Mi S, Durbin R, Huang HV, Rice CM, Stollar V. Association of the Sindbis virus RNA methyltransferase activity with the nonstructural protein nsP1. Virology. 1989;170(2):385-91.
-
(1989)
Virology
, vol.170
, Issue.2
, pp. 385-391
-
-
Mi, S.1
Durbin, R.2
Huang, H.V.3
Rice, C.M.4
Stollar, V.5
-
10
-
-
0025851067
-
Expression of Sindbis virus nsP1 and methyltransferase activity in Escherichia coli
-
Mi S, Stollar V. Expression of Sindbis virus nsP1 and methyltransferase activity in Escherichia coli. Virology. 1991;184(1):423-7.
-
(1991)
Virology
, vol.184
, Issue.1
, pp. 423-427
-
-
Mi, S.1
Stollar, V.2
-
11
-
-
0031060112
-
Critical residues of Semliki Forest virus RNA capping enzyme involved in methyltransferase and guanylyltransferase-like activities
-
Ahola T, Laakkonen P, Vihinen H, Kaariainen L. Critical residues of Semliki Forest virus RNA capping enzyme involved in methyltransferase and guanylyltransferase-like activities. J Virol. 1997;71(1):392-7.
-
(1997)
J Virol
, vol.71
, Issue.1
, pp. 392-397
-
-
Ahola, T.1
Laakkonen, P.2
Vihinen, H.3
Kaariainen, L.4
-
12
-
-
84864912887
-
The viral RNA capping machinery as a target for antiviral drugs
-
Ferron F, Decroly E, Selisko B, Canard B. The viral RNA capping machinery as a target for antiviral drugs. Antiviral Res. 2012;96(1):21-31. 10.1016/j.antiviral.2012.07.007.
-
(2012)
Antiviral Res
, vol.96
, Issue.1
, pp. 21-31
-
-
Ferron, F.1
Decroly, E.2
Selisko, B.3
Canard, B.4
-
13
-
-
15244352597
-
Inhibitors of virus replication: recent developments and prospects
-
Magden J, Kaariainen L, Ahola T. Inhibitors of virus replication: recent developments and prospects. Appl Microbiol Biotechnol. 2005;66(6):612-21. 10.1007/s00253-004-1783-3.
-
(2005)
Appl Microbiol Biotechnol
, vol.66
, Issue.6
, pp. 612-621
-
-
Magden, J.1
Kaariainen, L.2
Ahola, T.3
-
14
-
-
16844378432
-
mRNA guanylation catalyzed by the S-adenosylmethionine-dependent guanylyltransferase of bamboo mosaic virus
-
Huang YL, Hsu YH, Han YT, Meng M. mRNA guanylation catalyzed by the S-adenosylmethionine-dependent guanylyltransferase of bamboo mosaic virus. J Biol Chem. 2005;280(13):13153-62. 10.1074/jbc.M412619200.
-
(2005)
J Biol Chem
, vol.280
, Issue.13
, pp. 13153-13162
-
-
Huang, Y.L.1
Hsu, Y.H.2
Han, Y.T.3
Meng, M.4
-
15
-
-
0034979131
-
Virus-specific mRNA capping enzyme encoded by hepatitis E virus
-
Magden J, Takeda N, Li T, Auvinen P, Ahola T, Miyamura T, et al. Virus-specific mRNA capping enzyme encoded by hepatitis E virus. J Virol. 2001;75(14):6249-55. 10.1128/JVI. 75.14.6249-6255.2001.
-
(2001)
J Virol
, vol.75
, Issue.14
, pp. 6249-6255
-
-
Magden, J.1
Takeda, N.2
Li, T.3
Auvinen, P.4
Ahola, T.5
Miyamura, T.6
-
16
-
-
33947428398
-
Enzymatic defects of the nsP2 proteins of Semliki Forest virus temperature-sensitive mutants
-
Balistreri G, Caldentey J, Kaariainen L, Ahola T. Enzymatic defects of the nsP2 proteins of Semliki Forest virus temperature-sensitive mutants. J Virol. 2007;81(6):2849-60. 10.1128/JVI. 02078-06.
-
(2007)
J Virol
, vol.81
, Issue.6
, pp. 2849-2860
-
-
Balistreri, G.1
Caldentey, J.2
Kaariainen, L.3
Ahola, T.4
-
17
-
-
0034625437
-
Identification of a novel function of the alphavirus capping apparatus. RNA 5'-triphosphatase activity of Nsp2
-
Vasiljeva L, Merits A, Auvinen P, Kaariainen L. Identification of a novel function of the alphavirus capping apparatus. RNA 5'-triphosphatase activity of Nsp2. J Biol Chem. 2000;275(23):17281-7. 10.1074/jbc.M910340199.
-
(2000)
J Biol Chem
, vol.275
, Issue.23
, pp. 17281-17287
-
-
Vasiljeva, L.1
Merits, A.2
Auvinen, P.3
Kaariainen, L.4
-
18
-
-
0035198148
-
The helicase-like domain of plant potexvirus replicase participates in formation of RNA 5' cap structure by exhibiting RNA 5'-triphosphatase activity
-
Li YI, Shih TW, Hsu YH, Han YT, Huang YL, Meng M. The helicase-like domain of plant potexvirus replicase participates in formation of RNA 5' cap structure by exhibiting RNA 5'-triphosphatase activity. J Virol. 2001;75(24):12114-20. 10.1128/JVI. 75.24.12114-12120.2001.
-
(2001)
J Virol
, vol.75
, Issue.24
, pp. 12114-12120
-
-
Li, Y.I.1
Shih, T.W.2
Hsu, Y.H.3
Han, Y.T.4
Huang, Y.L.5
Meng, M.6
-
19
-
-
84896884405
-
Functional crosstalk between distant domains of chikungunya virus non-structural protein 2 is decisive for its RNA-modulating activity
-
Das PK, Merits A, Lulla A. Functional crosstalk between distant domains of chikungunya virus non-structural protein 2 is decisive for its RNA-modulating activity. J Biol Chem. 2014. 10.1074/jbc.M113.503433.
-
(2014)
J Biol Chem
-
-
Das, P.K.1
Merits, A.2
Lulla, A.3
-
20
-
-
0347634425
-
Critical residues for GTP methylation and formation of the covalent m7GMP-enzyme intermediate in the capping enzyme domain of bamboo mosaic virus
-
Huang YL, Han YT, Chang YT, Hsu YH, Meng M. Critical residues for GTP methylation and formation of the covalent m7GMP-enzyme intermediate in the capping enzyme domain of bamboo mosaic virus. J Virol. 2004;78(3):1271-80.
-
(2004)
J Virol
, vol.78
, Issue.3
, pp. 1271-1280
-
-
Huang, Y.L.1
Han, Y.T.2
Chang, Y.T.3
Hsu, Y.H.4
Meng, M.5
-
21
-
-
0029879411
-
Mutagenesis of the Sindbis virus nsP1 protein: effects on methyltransferase activity and viral infectivity
-
Wang HL, O'Rear J, Stollar V. Mutagenesis of the Sindbis virus nsP1 protein: effects on methyltransferase activity and viral infectivity. Virology. 1996;217(2):527-31. 10.1006/viro.1996.0147.
-
(1996)
Virology
, vol.217
, Issue.2
, pp. 527-531
-
-
Wang, H.L.1
O'Rear, J.2
Stollar, V.3
-
22
-
-
0029956554
-
The effects of palmitoylation on membrane association of Semliki forest virus RNA capping enzyme
-
Laakkonen P, Ahola T, Kaariainen L. The effects of palmitoylation on membrane association of Semliki forest virus RNA capping enzyme. J Biol Chem. 1996;271(45):28567-71.
-
(1996)
J Biol Chem
, vol.271
, Issue.45
, pp. 28567-28571
-
-
Laakkonen, P.1
Ahola, T.2
Kaariainen, L.3
-
23
-
-
0026655694
-
Computer-assisted assignment of functional domains in the nonstructural polyprotein of hepatitis E virus: delineation of an additional group of positive-strand RNA plant and animal viruses
-
Koonin EV, Gorbalenya AE, Purdy MA, Rozanov MN, Reyes GR, Bradley DW. Computer-assisted assignment of functional domains in the nonstructural polyprotein of hepatitis E virus: delineation of an additional group of positive-strand RNA plant and animal viruses. Proc Natl Acad Sci U S A. 1992;89(17):8259-63.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, Issue.17
, pp. 8259-8263
-
-
Koonin, E.V.1
Gorbalenya, A.E.2
Purdy, M.A.3
Rozanov, M.N.4
Reyes, G.R.5
Bradley, D.W.6
-
24
-
-
0035169546
-
Flock house virus RNA replicates on outer mitochondrial membranes in Drosophila cells
-
Miller DJ, Schwartz MD, Ahlquist P. Flock house virus RNA replicates on outer mitochondrial membranes in Drosophila cells. J Virol. 2001;75(23):11664-76. 10.1128/JVI.75.23.11664-11676.2001.
-
(2001)
J Virol
, vol.75
, Issue.23
, pp. 11664-11676
-
-
Miller, D.J.1
Schwartz, M.D.2
Ahlquist, P.3
-
25
-
-
51349094158
-
Recent insights into the biology and biomedical applications of Flock House virus
-
Venter PA, Schneemann A. Recent insights into the biology and biomedical applications of Flock House virus. Cell Mol Life Sci. 2008;65(17):2675-87. 10.1007/s00018-008-8037-y.
-
(2008)
Cell Mol Life Sci
, vol.65
, Issue.17
, pp. 2675-2687
-
-
Venter, P.A.1
Schneemann, A.2
-
26
-
-
0021770883
-
Primary and secondary structure of black beetle virus RNA2, the genomic messenger for BBV coat protein precursor
-
Dasgupta R, Ghosh A, Dasmahapatra B, Guarino LA, Kaesberg P. Primary and secondary structure of black beetle virus RNA2, the genomic messenger for BBV coat protein precursor. Nucleic Acids Res. 1984;12(18):7215-23.
-
(1984)
Nucleic Acids Res
, vol.12
, Issue.18
, pp. 7215-7223
-
-
Dasgupta, R.1
Ghosh, A.2
Dasmahapatra, B.3
Guarino, L.A.4
Kaesberg, P.5
-
27
-
-
0022429272
-
Structure of the black beetle virus genome and its functional implications
-
Dasmahapatra B, Dasgupta R, Ghosh A, Kaesberg P. Structure of the black beetle virus genome and its functional implications. J Mol Biol. 1985;182(2):183-9.
-
(1985)
J Mol Biol
, vol.182
, Issue.2
, pp. 183-189
-
-
Dasmahapatra, B.1
Dasgupta, R.2
Ghosh, A.3
Kaesberg, P.4
-
28
-
-
0033258488
-
Reverse genetics of nodaviruses
-
Ball LA, Johnson KL. Reverse genetics of nodaviruses. Adv Virus Res. 1999;53:229-44.
-
(1999)
Adv Virus Res
, vol.53
, pp. 229-244
-
-
Ball, L.A.1
Johnson, K.L.2
-
29
-
-
56349152646
-
The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups
-
Koonin EV, Wolf YI, Nagasaki K, Dolja VV. The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups. Nat Rev Microbiol. 2008;6(12):925-39. 10.1038/nrmicro2030.
-
(2008)
Nat Rev Microbiol
, vol.6
, Issue.12
, pp. 925-939
-
-
Koonin, E.V.1
Wolf, Y.I.2
Nagasaki, K.3
Dolja, V.V.4
-
30
-
-
0034900148
-
Comparisons among the larger genome segments of six nodaviruses and their encoded RNA replicases
-
Johnson KN, Johnson KL, Dasgupta R, Gratsch T, Ball LA. Comparisons among the larger genome segments of six nodaviruses and their encoded RNA replicases. J Gen Virol. 2001;82(Pt 8):1855-66.
-
(2001)
J Gen Virol
, vol.82
, pp. 1855-1866
-
-
Johnson, K.N.1
Johnson, K.L.2
Dasgupta, R.3
Gratsch, T.4
Ball, L.A.5
-
31
-
-
84886651247
-
Characterization of a nodavirus replicase revealed a de novo initiation mechanism of RNA synthesis and terminal nucleotidyltransferase activity
-
Wang Z, Qiu Y, Liu Y, Qi N, Si J, Xia X, et al. Characterization of a nodavirus replicase revealed a de novo initiation mechanism of RNA synthesis and terminal nucleotidyltransferase activity. J Biol Chem. 2013;288(43):30785-801. 10.1074/jbc.M113.492728.
-
(2013)
J Biol Chem
, vol.288
, Issue.43
, pp. 30785-307801
-
-
Wang, Z.1
Qiu, Y.2
Liu, Y.3
Qi, N.4
Si, J.5
Xia, X.6
-
32
-
-
33744779891
-
Sequence comparison and protein structure prediction
-
Dunbrack Jr RL. Sequence comparison and protein structure prediction. Curr Opin Struct Biol. 2006;16(3):374-84. 10.1016/j.sbi.2006.05.006.
-
(2006)
Curr Opin Struct Biol
, vol.16
, Issue.3
, pp. 374-384
-
-
Dunbrack, R.L.1
-
33
-
-
84890891375
-
Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently "orphan" viral proteins
-
Kuchibhatla DB, Sherman WA, Chung BY, Cook S, Schneider G, Eisenhaber B, et al. Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently "orphan" viral proteins. J Virol. 2014;88(1):10-20. 10.1128/JVI. 02595-13.
-
(2014)
J Virol
, vol.88
, Issue.1
, pp. 10-20
-
-
Kuchibhatla, D.B.1
Sherman, W.A.2
Chung, B.Y.3
Cook, S.4
Schneider, G.5
Eisenhaber, B.6
-
34
-
-
79958058080
-
Protein sequence comparison and fold recognition: progress and good-practice benchmarking
-
Soding J, Remmert M. Protein sequence comparison and fold recognition: progress and good-practice benchmarking. Curr Opin Struct Biol. 2011;21(3):404-11. 10.1016/j.sbi.2011.03.005.
-
(2011)
Curr Opin Struct Biol
, vol.21
, Issue.3
, pp. 404-411
-
-
Soding, J.1
Remmert, M.2
-
35
-
-
80051583576
-
Heterologous production, purification and characterization of enzymatically active Sindbis virus nonstructural protein nsP1
-
Tomar S, Narwal M, Harms E, Smith JL, Kuhn RJ. Heterologous production, purification and characterization of enzymatically active Sindbis virus nonstructural protein nsP1. Protein Expr Purif. 2011;79(2):277-84. 10.1016/j.pep.2011.05.022.
-
(2011)
Protein Expr Purif
, vol.79
, Issue.2
, pp. 277-284
-
-
Tomar, S.1
Narwal, M.2
Harms, E.3
Smith, J.L.4
Kuhn, R.J.5
-
36
-
-
84864282616
-
Functional analysis of the conserved histidine residue of Bamboo mosaic virus capping enzyme in the activity for the formation of the covalent enzyme-m7GMP intermediate
-
Lin HY, Yu CY, Hsu YH, Meng M. Functional analysis of the conserved histidine residue of Bamboo mosaic virus capping enzyme in the activity for the formation of the covalent enzyme-m7GMP intermediate. FEBS Lett. 2012;586(16):2326-31. 10.1016/j.febslet.2012.05.024.
-
(2012)
FEBS Lett
, vol.586
, Issue.16
, pp. 2326-2331
-
-
Lin, H.Y.1
Yu, C.Y.2
Hsu, Y.H.3
Meng, M.4
-
37
-
-
0034899778
-
Ultrastructural localization and epitope mapping of the methyltransferase-like and helicase-like proteins of Beet yellows virus
-
Erokhina TN, Vitushkina MV, Zinovkin RA, Lesemann DE, Jelkmann W, Koonin EV, et al. Ultrastructural localization and epitope mapping of the methyltransferase-like and helicase-like proteins of Beet yellows virus. J Gen Virol. 2001;82(Pt 8):1983-94.
-
(2001)
J Gen Virol
, vol.82
, pp. 1983-1994
-
-
Erokhina, T.N.1
Vitushkina, M.V.2
Zinovkin, R.A.3
Lesemann, D.E.4
Jelkmann, W.5
Koonin, E.V.6
-
38
-
-
0031851751
-
Interactions between the structural domains of the RNA replication proteins of plant-infecting RNA viruses
-
O'Reilly EK, Wang Z, French R, Kao CC. Interactions between the structural domains of the RNA replication proteins of plant-infecting RNA viruses. J Virol. 1998;72(9):7160-9.
-
(1998)
J Virol
, vol.72
, Issue.9
, pp. 7160-7169
-
-
O'Reilly, E.K.1
Wang, Z.2
French, R.3
Kao, C.C.4
-
39
-
-
34547590429
-
PROMALS web server for accurate multiple protein sequence alignments
-
Pei JM, Kim BH, Tang M, Grishin NV. PROMALS web server for accurate multiple protein sequence alignments. Nucleic Acids Res. 2007;35:W649-W52. 10.1093/Nar/Gkm227.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W649-W652
-
-
Pei, J.M.1
Kim, B.H.2
Tang, M.3
Grishin, N.V.4
-
40
-
-
79551680424
-
Mutational effects of the consensus aromatic residues in the mRNA capping domain of Bamboo mosaic virus on GTP methylation and virus accumulation
-
Hu RH, Lin MC, Hsu YH, Meng M. Mutational effects of the consensus aromatic residues in the mRNA capping domain of Bamboo mosaic virus on GTP methylation and virus accumulation. Virology. 2011;411(1):15-24. 10.1016/j.virol.2010.12.022.
-
(2011)
Virology
, vol.411
, Issue.1
, pp. 15-24
-
-
Hu, R.H.1
Lin, M.C.2
Hsu, Y.H.3
Meng, M.4
-
41
-
-
0025752329
-
Mutations that confer resistance to mycophenolic acid and ribavirin on Sindbis virus map to the nonstructural protein nsP1
-
Scheidel LM, Stollar V. Mutations that confer resistance to mycophenolic acid and ribavirin on Sindbis virus map to the nonstructural protein nsP1. Virology. 1991;181(2):490-9.
-
(1991)
Virology
, vol.181
, Issue.2
, pp. 490-499
-
-
Scheidel, L.M.1
Stollar, V.2
-
42
-
-
0028246506
-
Mutations in the nsP1 coding sequence of Sindbis virus which restrict viral replication in secondary cultures of chick embryo fibroblasts prepared from aged primary cultures
-
Rosenblum CI, Scheidel LM, Stollar V. Mutations in the nsP1 coding sequence of Sindbis virus which restrict viral replication in secondary cultures of chick embryo fibroblasts prepared from aged primary cultures. Virology. 1994;198(1):100-8. 10.1006/viro.1994.1012.
-
(1994)
Virology
, vol.198
, Issue.1
, pp. 100-108
-
-
Rosenblum, C.I.1
Scheidel, L.M.2
Stollar, V.3
-
43
-
-
0031579223
-
Complementation of and interference with Sindbis virus replication by full-length and deleted forms of the nonstructural protein, nsP1, expressed in stable transfectants of Hela cells
-
Li ML, Wang HL, Stollar V. Complementation of and interference with Sindbis virus replication by full-length and deleted forms of the nonstructural protein, nsP1, expressed in stable transfectants of Hela cells. Virology. 1997;227(2):361-9. 10.1006/viro.1996.8342.
-
(1997)
Virology
, vol.227
, Issue.2
, pp. 361-369
-
-
Li, M.L.1
Wang, H.L.2
Stollar, V.3
-
44
-
-
0035167111
-
Characterization of the AdoMet-dependent guanylyltransferase activity that is associated with the N terminus of bamboo mosaic virus replicase
-
Li YI, Chen YJ, Hsu YH, Meng M. Characterization of the AdoMet-dependent guanylyltransferase activity that is associated with the N terminus of bamboo mosaic virus replicase. J Virol. 2001;75(2):782-8. 10.1128/JVI. 75.2.782-788.2001.
-
(2001)
J Virol
, vol.75
, Issue.2
, pp. 782-788
-
-
Li, Y.I.1
Chen, Y.J.2
Hsu, Y.H.3
Meng, M.4
-
45
-
-
84876448042
-
RNA viruses rewire cellular pathways to build replication organelles
-
Belov GA, van Kuppeveld FJ. (+)RNA viruses rewire cellular pathways to build replication organelles. Curr Opin Virol. 2012;2(6):740-7. 10.1016/j.coviro.2012.09.006.
-
(2012)
Curr Opin Virol
, vol.2
, Issue.6
, pp. 740-747
-
-
Belov, G.A.1
van Kuppeveld, F.J.2
-
46
-
-
63449094491
-
An amphipathic alpha-helix controls multiple roles of brome mosaic virus protein 1a in RNA replication complex assembly and function
-
Liu L, Westler WM, den Boon JA, Wang X, Diaz A, Steinberg HA, et al. An amphipathic alpha-helix controls multiple roles of brome mosaic virus protein 1a in RNA replication complex assembly and function. PLoS Pathog. 2009;5(3):e1000351. 10.1371/journal.ppat.1000351.
-
(2009)
PLoS Pathog
, vol.5
, Issue.3
, pp. e1000351
-
-
Liu, L.1
Westler, W.M.2
Boon, J.A.3
Wang, X.4
Diaz, A.5
Steinberg, H.A.6
-
47
-
-
33846052318
-
Role of the amphipathic peptide of Semliki forest virus replicase protein nsP1 in membrane association and virus replication
-
Spuul P, Salonen A, Merits A, Jokitalo E, Kaariainen L, Ahola T. Role of the amphipathic peptide of Semliki forest virus replicase protein nsP1 in membrane association and virus replication. J Virol. 2007;81(2):872-83. 10.1128/JVI. 01785-06.
-
(2007)
J Virol
, vol.81
, Issue.2
, pp. 872-883
-
-
Spuul, P.1
Salonen, A.2
Merits, A.3
Jokitalo, E.4
Kaariainen, L.5
Ahola, T.6
-
48
-
-
0033152498
-
Semliki Forest virus mRNA capping enzyme requires association with anionic membrane phospholipids for activity
-
Ahola T, Lampio A, Auvinen P, Kaariainen L. Semliki Forest virus mRNA capping enzyme requires association with anionic membrane phospholipids for activity. EMBO J. 1999;18(11):3164-72. 10.1093/emboj/18.11.3164.
-
(1999)
EMBO J
, vol.18
, Issue.11
, pp. 3164-3172
-
-
Ahola, T.1
Lampio, A.2
Auvinen, P.3
Kaariainen, L.4
-
49
-
-
0034536098
-
Membrane binding mechanism of an RNA virus-capping enzyme
-
Lampio A, Kilpelainen I, Pesonen S, Karhi K, Auvinen P, Somerharju P, et al. Membrane binding mechanism of an RNA virus-capping enzyme. J Biol Chem. 2000;275(48):37853-9. 10.1074/jbc.M004865200.
-
(2000)
J Biol Chem
, vol.275
, Issue.48
, pp. 37853-37859
-
-
Lampio, A.1
Kilpelainen, I.2
Pesonen, S.3
Karhi, K.4
Auvinen, P.5
Somerharju, P.6
-
50
-
-
33845350971
-
Amphipathic helices as mediators of the membrane interaction of amphitropic proteins, and as modulators of bilayer physical properties
-
Cornell RB, Taneva SG. Amphipathic helices as mediators of the membrane interaction of amphitropic proteins, and as modulators of bilayer physical properties. Curr Protein Pept Sci. 2006;7(6):539-52.
-
(2006)
Curr Protein Pept Sci
, vol.7
, Issue.6
, pp. 539-552
-
-
Cornell, R.B.1
Taneva, S.G.2
-
51
-
-
77951896130
-
Amphipathic helices and membrane curvature
-
Drin G, Antonny B. Amphipathic helices and membrane curvature. FEBS Lett. 2010;584(9):1840-7. 10.1016/j.febslet.2009.10.022.
-
(2010)
FEBS Lett
, vol.584
, Issue.9
, pp. 1840-1847
-
-
Drin, G.1
Antonny, B.2
-
52
-
-
0033928199
-
Effects of palmitoylation of replicase protein nsP1 on alphavirus infection
-
Ahola T, Kujala P, Tuittila M, Blom T, Laakkonen P, Hinkkanen A, et al. Effects of palmitoylation of replicase protein nsP1 on alphavirus infection. J Virol. 2000;74(15):6725-33.
-
(2000)
J Virol
, vol.74
, Issue.15
, pp. 6725-6733
-
-
Ahola, T.1
Kujala, P.2
Tuittila, M.3
Blom, T.4
Laakkonen, P.5
Hinkkanen, A.6
-
53
-
-
0035194398
-
Identification of sequences in Brome mosaic virus replicase protein 1a that mediate association with endoplasmic reticulum membranes
-
den Boon JA, Chen J, Ahlquist P. Identification of sequences in Brome mosaic virus replicase protein 1a that mediate association with endoplasmic reticulum membranes. J Virol. 2001;75(24):12370-81. 10.1128/JVI. 75.24.12370-12381.2001.
-
(2001)
J Virol
, vol.75
, Issue.24
, pp. 12370-12381
-
-
Boon, J.A.1
Chen, J.2
Ahlquist, P.3
-
54
-
-
33748881180
-
Prediction of amphipathic in-plane membrane anchors in monotopic proteins using a SVM classifier
-
Sapay N, Guermeur Y, Deleage G. Prediction of amphipathic in-plane membrane anchors in monotopic proteins using a SVM classifier. BMC Bioinformatics. 2006;7:255. 10.1186/1471-2105-7-255.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 255
-
-
Sapay, N.1
Guermeur, Y.2
Deleage, G.3
-
55
-
-
51749085388
-
HELIQUEST: a web server to screen sequences with specific alpha-helical properties
-
Gautier R, Douguet D, Antonny B, Drin G. HELIQUEST: a web server to screen sequences with specific alpha-helical properties. Bioinformatics. 2008;24(18):2101-2. 10.1093/bioinformatics/btn392.
-
(2008)
Bioinformatics
, vol.24
, Issue.18
, pp. 2101-2102
-
-
Gautier, R.1
Douguet, D.2
Antonny, B.3
Drin, G.4
-
56
-
-
33845983587
-
Modeling-based characterization of the elicitor function of amino acid 461 of Cucumber mosaic virus 1a protein in the hypersensitive response
-
Salanki K, Gellert A, Naray-Szabo G, Balazs E. Modeling-based characterization of the elicitor function of amino acid 461 of Cucumber mosaic virus 1a protein in the hypersensitive response. Virology. 2007;358(1):109-18. 10.1016/j.virol.2006.08.014.
-
(2007)
Virology
, vol.358
, Issue.1
, pp. 109-118
-
-
Salanki, K.1
Gellert, A.2
Naray-Szabo, G.3
Balazs, E.4
-
57
-
-
0038384096
-
The nucleotide sequence and genome organization of Sclerophthora macrospora virus A
-
Yokoi T, Yamashita S, Hibi T. The nucleotide sequence and genome organization of Sclerophthora macrospora virus A. Virology. 2003;311(2):394-9.
-
(2003)
Virology
, vol.311
, Issue.2
, pp. 394-399
-
-
Yokoi, T.1
Yamashita, S.2
Hibi, T.3
-
58
-
-
79952698865
-
The nucleotide sequence and genome organization of Plasmopara halstedii virus
-
Heller-Dohmen M, Gopfert JC, Pfannstiel J, Spring O. The nucleotide sequence and genome organization of Plasmopara halstedii virus. Virol J. 2011;8:123. 10.1186/1743-422X-8-123.
-
(2011)
Virol J
, vol.8
, pp. 123
-
-
Heller-Dohmen, M.1
Gopfert, J.C.2
Pfannstiel, J.3
Spring, O.4
-
59
-
-
39149123804
-
Molecular characterisation and phylogenetic analysis of Chronic bee paralysis virus, a honey bee virus
-
Olivier V, Blanchard P, Chaouch S, Lallemand P, Schurr F, Celle O, et al. Molecular characterisation and phylogenetic analysis of Chronic bee paralysis virus, a honey bee virus. Virus Res. 2008;132(1-2):59-68. 10.1016/j.virusres.2007.10.014.
-
(2008)
Virus Res
, vol.132
, Issue.1-2
, pp. 59-68
-
-
Olivier, V.1
Blanchard, P.2
Chaouch, S.3
Lallemand, P.4
Schurr, F.5
Celle, O.6
-
60
-
-
84894093980
-
Novel virus discovery and genome reconstruction from field RNA samples reveals highly divergent viruses in dipteran hosts
-
Cook S, Chung BY, Bass D, Moureau G, Tang S, McAlister E, et al. Novel virus discovery and genome reconstruction from field RNA samples reveals highly divergent viruses in dipteran hosts. PLoS One. 2013;8(11):e80720. 10.1371/journal.pone.0080720.
-
(2013)
PLoS One
, vol.8
, Issue.11
, pp. e80720
-
-
Cook, S.1
Chung, B.Y.2
Bass, D.3
Moureau, G.4
Tang, S.5
McAlister, E.6
-
61
-
-
79958172988
-
Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia
-
Runckel C, Flenniken ML, Engel JC, Ruby JG, Ganem D, Andino R, et al. Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia. PLoS One. 2011;6(6):e20656. 10.1371/journal.pone.0020656.
-
(2011)
PLoS One
, vol.6
, Issue.6
, pp. e20656
-
-
Runckel, C.1
Flenniken, M.L.2
Engel, J.C.3
Ruby, J.G.4
Ganem, D.5
Andino, R.6
-
62
-
-
79851477108
-
Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses
-
Felix MA, Ashe A, Piffaretti J, Wu G, Nuez I, Belicard T, et al. Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses. Plos Biol. 2011;9(1):e1000586. 10.1371/journal.pbio.1000586.
-
(2011)
Plos Biol
, vol.9
, Issue.1
, pp. e1000586
-
-
Felix, M.A.1
Ashe, A.2
Piffaretti, J.3
Wu, G.4
Nuez, I.5
Belicard, T.6
-
63
-
-
84869006062
-
Complete genome sequence of Le Blanc virus, a third Caenorhabditis nematode-infecting virus
-
Franz CJ, Zhao G, Felix MA, Wang D. Complete genome sequence of Le Blanc virus, a third Caenorhabditis nematode-infecting virus. J Virol. 2012;86(21):11940. 10.1128/JVI. 02025-12.
-
(2012)
J Virol
, vol.86
, Issue.21
, pp. 11940
-
-
Franz, C.J.1
Zhao, G.2
Felix, M.A.3
Wang, D.4
-
64
-
-
74249104499
-
Fast and accurate automatic structure prediction with HHpred
-
Hildebrand A, Remmert M, Biegert A, Soding J. Fast and accurate automatic structure prediction with HHpred. Proteins. 2009;77 Suppl 9:128-32. 10.1002/prot.22499.
-
(2009)
Proteins
, vol.77
, pp. 128-132
-
-
Hildebrand, A.1
Remmert, M.2
Biegert, A.3
Soding, J.4
-
65
-
-
84868121318
-
Guanylylation-competent replication proteins of Tomato mosaic virus are disulfide-linked
-
Nishikiori M, Meshi T, Ishikawa M. Guanylylation-competent replication proteins of Tomato mosaic virus are disulfide-linked. Virology. 2012;434(1):118-28. 10.1016/j.virol.2012.09.011.
-
(2012)
Virology
, vol.434
, Issue.1
, pp. 118-128
-
-
Nishikiori, M.1
Meshi, T.2
Ishikawa, M.3
-
66
-
-
0036827714
-
Role of the alfalfa mosaic virus methyltransferase-like domain in negative-strand RNA synthesis
-
Vlot AC, Menard A, Bol JF. Role of the alfalfa mosaic virus methyltransferase-like domain in negative-strand RNA synthesis. J Virol. 2002;76(22):11321-8.
-
(2002)
J Virol
, vol.76
, Issue.22
, pp. 11321-11328
-
-
Vlot, A.C.1
Menard, A.2
Bol, J.F.3
-
67
-
-
40149105692
-
cis- and trans-acting functions of brome mosaic virus protein 1a in genomic RNA1 replication
-
Yi G, Kao C. cis- and trans-acting functions of brome mosaic virus protein 1a in genomic RNA1 replication. J Virol. 2008;82(6):3045-53. 10.1128/JVI.02390-07.
-
(2008)
J Virol
, vol.82
, Issue.6
, pp. 3045-3053
-
-
Yi, G.1
Kao, C.2
-
68
-
-
21644451644
-
In vivo self-interaction of nodavirus RNA replicase protein a revealed by fluorescence resonance energy transfer
-
Dye BT, Miller DJ, Ahlquist P. In vivo self-interaction of nodavirus RNA replicase protein a revealed by fluorescence resonance energy transfer. J Virol. 2005;79(14):8909-19. 10.1128/JVI. 79.14.8909-8919.2005.
-
(2005)
J Virol
, vol.79
, Issue.14
, pp. 8909-8919
-
-
Dye, B.T.1
Miller, D.J.2
Ahlquist, P.3
-
69
-
-
2642539108
-
Membrane association of greasy grouper nervous necrosis virus protein A and characterization of its mitochondrial localization targeting signal
-
Guo YX, Chan SW, Kwang J. Membrane association of greasy grouper nervous necrosis virus protein A and characterization of its mitochondrial localization targeting signal. J Virol. 2004;78(12):6498-508. 10.1128/JVI. 78.12.6498-6508.2004.
-
(2004)
J Virol
, vol.78
, Issue.12
, pp. 6498-6508
-
-
Guo, Y.X.1
Chan, S.W.2
Kwang, J.3
-
70
-
-
35748982628
-
RNA-dependent RNA polymerase from Atlantic halibut nodavirus contains two signals for localization to the mitochondria
-
Mezeth KB, Nylund S, Henriksen H, Patel S, Nerland AH, Szilvay AM. RNA-dependent RNA polymerase from Atlantic halibut nodavirus contains two signals for localization to the mitochondria. Virus Res. 2007;130(1-2):43-52. 10.1016/j.virusres.2007.05.014.
-
(2007)
Virus Res
, vol.130
, Issue.1-2
, pp. 43-52
-
-
Mezeth, K.B.1
Nylund, S.2
Henriksen, H.3
Patel, S.4
Nerland, A.H.5
Szilvay, A.M.6
-
71
-
-
0036776626
-
Flock house virus RNA polymerase is a transmembrane protein with amino-terminal sequences sufficient for mitochondrial localization and membrane insertion
-
Miller DJ, Ahlquist P. Flock house virus RNA polymerase is a transmembrane protein with amino-terminal sequences sufficient for mitochondrial localization and membrane insertion. J Virol. 2002;76(19):9856-67.
-
(2002)
J Virol
, vol.76
, Issue.19
, pp. 9856-9867
-
-
Miller, D.J.1
Ahlquist, P.2
-
72
-
-
84875809495
-
Membrane association of Wuhan nodavirus protein A is required for its ability to accumulate genomic RNA1 template
-
Qiu Y, Wang Z, Liu Y, Qi N, Miao M, Si J, et al. Membrane association of Wuhan nodavirus protein A is required for its ability to accumulate genomic RNA1 template. Virology. 2013;439(2):140-51. 10.1016/j.virol.2013.02.010.
-
(2013)
Virology
, vol.439
, Issue.2
, pp. 140-151
-
-
Qiu, Y.1
Wang, Z.2
Liu, Y.3
Qi, N.4
Miao, M.5
Si, J.6
-
73
-
-
84899864728
-
Two membrane-associated regions within the Nodamura virus RNA-dependent RNA polymerase are critical for both mitochondrial localization and RNA replication
-
Gant Jr VU, Moreno S, Varela-Ramirez A, Johnson KL. Two membrane-associated regions within the Nodamura virus RNA-dependent RNA polymerase are critical for both mitochondrial localization and RNA replication. J Virol. 2014;88(11):5912-26. 10.1128/JVI. 03032-13.
-
(2014)
J Virol
, vol.88
, Issue.11
, pp. 5912-5926
-
-
Gant, V.U.1
Moreno, S.2
Varela-Ramirez, A.3
Johnson, K.L.4
-
74
-
-
84896107635
-
The self-interaction of a nodavirus replicase is enhanced by mitochondrial membrane lipids
-
Qiu Y, Wang Z, Liu Y, Han Y, Miao M, Qi N, et al. The self-interaction of a nodavirus replicase is enhanced by mitochondrial membrane lipids. PLoS One. 2014;9(2):e89628. 10.1371/journal.pone.0089628.
-
(2014)
PLoS One
, vol.9
, Issue.2
, pp. e89628
-
-
Qiu, Y.1
Wang, Z.2
Liu, Y.3
Han, Y.4
Miao, M.5
Qi, N.6
-
75
-
-
77749283581
-
Alphavirus antiviral drug development: scientific gap analysis and prospective research areas
-
Reichert E, Clase A, Bacetty A, Larsen J. Alphavirus antiviral drug development: scientific gap analysis and prospective research areas. Biosecur Bioterror. 2009;7(4):413-27. 10.1089/bsp.2009.0032.
-
(2009)
Biosecur Bioterror
, vol.7
, Issue.4
, pp. 413-427
-
-
Reichert, E.1
Clase, A.2
Bacetty, A.3
Larsen, J.4
-
76
-
-
33749536221
-
Application of the use of high-throughput technologies to the determination of protein structures of bacterial and viral pathogens
-
Fogg MJ, Alzari P, Bahar M, Bertini I, Betton JM, Burmeister WP, et al. Application of the use of high-throughput technologies to the determination of protein structures of bacterial and viral pathogens. Acta Crystallogr D Biol Crystallogr. 2006;62(Pt 10):1196-207. 10.1107/S0907444906030915.
-
(2006)
Acta Crystallogr D Biol Crystallogr
, vol.62
, pp. 1196-1207
-
-
Fogg, M.J.1
Alzari, P.2
Bahar, M.3
Bertini, I.4
Betton, J.M.5
Burmeister, W.P.6
-
77
-
-
0025743809
-
The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses
-
Koonin EV. The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J Gen Virol. 1991;72(Pt 9):2197-206.
-
(1991)
J Gen Virol
, vol.72
, pp. 2197-2206
-
-
Koonin, E.V.1
-
78
-
-
84859708669
-
PHYRN: a robust method for phylogenetic analysis of highly divergent sequences
-
Bhardwaj G, Ko KD, Hong Y, Zhang Z, Ho NL, Chintapalli SV, et al. PHYRN: a robust method for phylogenetic analysis of highly divergent sequences. PLoS One. 2012;7(4):e34261. 10.1371/journal.pone.0034261.
-
(2012)
PLoS One
, vol.7
, Issue.4
, pp. e34261
-
-
Bhardwaj, G.1
Ko, K.D.2
Hong, Y.3
Zhang, Z.4
Ho, N.L.5
Chintapalli, S.V.6
-
79
-
-
84923073842
-
Automated Structural Comparisons Clarify the Phylogeny of the Right-Hand-Shaped Polymerases
-
doi:msu219
-
Monttinen HA, Ravantti JJ, Stuart DI, Poranen MM. Automated Structural Comparisons Clarify the Phylogeny of the Right-Hand-Shaped Polymerases. Mol Biol Evol. 2014. doi:msu219.
-
(2014)
Mol Biol Evol
-
-
Monttinen, H.A.1
Ravantti, J.J.2
Stuart, D.I.3
Poranen, M.M.4
-
80
-
-
84901270625
-
Evolution of tertiary structure of viral RNA dependent polymerases
-
Cerny J, Cerna Bolfikova B, Valdes JJ, Grubhoffer L, Ruzek D. Evolution of tertiary structure of viral RNA dependent polymerases. PLoS One. 2014;9(5):e96070. 10.1371/journal.pone.0096070.
-
(2014)
PLoS One
, vol.9
, Issue.5
, pp. e96070
-
-
Cerny, J.1
Cerna Bolfikova, B.2
Valdes, J.J.3
Grubhoffer, L.4
Ruzek, D.5
-
81
-
-
84856894606
-
Bromovirus RNA replication compartment formation requires concerted action of 1a's self-interacting RNA capping and helicase domains
-
Diaz A, Gallei A, Ahlquist P. Bromovirus RNA replication compartment formation requires concerted action of 1a's self-interacting RNA capping and helicase domains. J Virol. 2012;86(2):821-34. 10.1128/JVI. 05684-11.
-
(2012)
J Virol
, vol.86
, Issue.2
, pp. 821-834
-
-
Diaz, A.1
Gallei, A.2
Ahlquist, P.3
-
82
-
-
34548679815
-
Three-dimensional analysis of a viral RNA replication complex reveals a virus-induced mini-organelle
-
Kopek BG, Perkins G, Miller DJ, Ellisman MH, Ahlquist P. Three-dimensional analysis of a viral RNA replication complex reveals a virus-induced mini-organelle. PLoS Biol. 2007;5(9):e220. 10.1371/journal.pbio.0050220.
-
(2007)
PLoS Biol
, vol.5
, Issue.9
, pp. e220
-
-
Kopek, B.G.1
Perkins, G.2
Miller, D.J.3
Ellisman, M.H.4
Ahlquist, P.5
-
83
-
-
0036204740
-
A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids
-
Schwartz M, Chen J, Janda M, Sullivan M, den Boon J, Ahlquist P. A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids. Mol Cell. 2002;9(3):505-14.
-
(2002)
Mol Cell
, vol.9
, Issue.3
, pp. 505-514
-
-
Schwartz, M.1
Chen, J.2
Janda, M.3
Sullivan, M.4
Boon, J.5
Ahlquist, P.6
-
84
-
-
84881231721
-
Template RNA length determines the size of replication complex spherules for Semliki forest virus
-
Kallio K, Hellstrom K, Balistreri G, Spuul P, Jokitalo E, Ahola T. Template RNA length determines the size of replication complex spherules for Semliki forest virus. J Virol. 2013. 10.1128/JVI.00660-13.
-
(2013)
J Virol
-
-
Kallio, K.1
Hellstrom, K.2
Balistreri, G.3
Spuul, P.4
Jokitalo, E.5
Ahola, T.6
-
85
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
(Web Server issue)
-
Soding J, Biegert A, Lupas AN. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 2005;33(Web Server issue):W244-8. 10.1093/nar/gki408.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. W244-W248
-
-
Soding, J.1
Biegert, A.2
Lupas, A.N.3
-
87
-
-
84864618245
-
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
-
Chang JM, Di Tommaso P, Taly JF, Notredame C. Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee. BMC Bioinformatics. 2012;13 Suppl 4:S1. 10.1186/1471-2105-13-S4-S1.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. S1
-
-
Chang, J.M.1
Di Tommaso, P.2
Taly, J.F.3
Notredame, C.4
-
88
-
-
79960001809
-
FFAS server: novel features and applications
-
(Web Server issue), doi:gkr441
-
Jaroszewski L, Li Z, Cai XH, Weber C, Godzik A. FFAS server: novel features and applications. Nucleic Acids Res. 2011;39(Web Server issue):W38-44. doi:gkr441.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W38-W44
-
-
Jaroszewski, L.1
Li, Z.2
Cai, X.H.3
Weber, C.4
Godzik, A.5
-
89
-
-
84856489442
-
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
-
Remmert M, Biegert A, Hauser A, Soding J. HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment. Nat Methods. 2012;9(2):173-5. 10.1038/Nmeth.1818.
-
(2012)
Nat Methods
, vol.9
, Issue.2
, pp. 173-175
-
-
Remmert, M.1
Biegert, A.2
Hauser, A.3
Soding, J.4
-
90
-
-
62649147821
-
Sequence context-specific profiles for homology searching
-
Biegert A, Soding J. Sequence context-specific profiles for homology searching. Proc Natl Acad Sci U S A. 2009;106(10):3770-5. 10.1073/pnas.0810767106.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.10
, pp. 3770-3775
-
-
Biegert, A.1
Soding, J.2
-
91
-
-
84870779164
-
Discriminative modelling of context-specific amino acid substitution probabilities
-
Angermuller C, Biegert A, Soding J. Discriminative modelling of context-specific amino acid substitution probabilities. Bioinformatics. 2012;28(24):3240-7. 10.1093/bioinformatics/bts622.
-
(2012)
Bioinformatics
, vol.28
, Issue.24
, pp. 3240-3247
-
-
Angermuller, C.1
Biegert, A.2
Soding, J.3
-
92
-
-
33747856166
-
The MPI Bioinformatics Toolkit for protein sequence analysis
-
(Web Server issue)
-
Biegert A, Mayer C, Remmert M, Soding J, Lupas AN. The MPI Bioinformatics Toolkit for protein sequence analysis. Nucleic Acids Res. 2006;34(Web Server issue):W335-9. 10.1093/nar/gkl217.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. W335-W339
-
-
Biegert, A.1
Mayer, C.2
Remmert, M.3
Soding, J.4
Lupas, A.N.5
-
93
-
-
79959959356
-
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
-
(Web Server issue)
-
Di Tommaso P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM, et al. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res. 2011;39(Web Server issue):W13-7. 10.1093/nar/gkr245.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W13-W17
-
-
Di Tommaso, P.1
Moretti, S.2
Xenarios, I.3
Orobitg, M.4
Montanyola, A.5
Chang, J.M.6
-
94
-
-
84870466552
-
Adding unaligned sequences into an existing alignment using MAFFT and LAST
-
Katoh K, Frith MC. Adding unaligned sequences into an existing alignment using MAFFT and LAST. Bioinformatics. 2012;28(23):3144-6. 10.1093/bioinformatics/bts578.
-
(2012)
Bioinformatics
, vol.28
, Issue.23
, pp. 3144-3146
-
-
Katoh, K.1
Frith, M.C.2
-
95
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics. 2009;25(9):1189-91. 10.1093/bioinformatics/btp033.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
96
-
-
77649249353
-
Visualization of multiple alignments, phylogenies and gene family evolution
-
Procter JB, Thompson J, Letunic I, Creevey C, Jossinet F, Barton GJ. Visualization of multiple alignments, phylogenies and gene family evolution. Nat Methods. 2010;7(3 Suppl):S16-25. 10.1038/nmeth.1434.
-
(2010)
Nat Methods
, vol.7
, Issue.3 SUPPL
, pp. S16-25
-
-
Procter, J.B.1
Thompson, J.2
Letunic, I.3
Creevey, C.4
Jossinet, F.5
Barton, G.J.6
-
97
-
-
48249102000
-
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
-
(Web Server issue)
-
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, et al. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008;36(Web Server issue):W465-9. 10.1093/nar/gkn180.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W465-W469
-
-
Dereeper, A.1
Guignon, V.2
Blanc, G.3
Audic, S.4
Buffet, S.5
Chevenet, F.6
-
98
-
-
44349192171
-
Prediction of disordered regions in proteins based on the meta approach
-
Ishida T, Kinoshita K. Prediction of disordered regions in proteins based on the meta approach. Bioinformatics. 2008;24(11):1344-8. 10.1093/bioinformatics/btn195.
-
(2008)
Bioinformatics
, vol.24
, Issue.11
, pp. 1344-1348
-
-
Ishida, T.1
Kinoshita, K.2
-
99
-
-
33748258328
-
A practical overview of protein disorder prediction methods
-
Ferron F, Longhi S, Canard B, Karlin D. A practical overview of protein disorder prediction methods. Proteins. 2006;65(1):1-14. 10.1002/prot.21075.
-
(2006)
Proteins
, vol.65
, Issue.1
, pp. 1-14
-
-
Ferron, F.1
Longhi, S.2
Canard, B.3
Karlin, D.4
-
100
-
-
0028501914
-
Nonglobular domains in protein sequences - automated segmentation using complexity-measures
-
Wootton JC. Nonglobular domains in protein sequences - automated segmentation using complexity-measures. Comput Chem. 1994;18(3):269-85. 10.1016/0097-8485(94)85023-2.
-
(1994)
Comput Chem
, vol.18
, Issue.3
, pp. 269-285
-
-
Wootton, J.C.1
-
101
-
-
67749125573
-
ANNIE: integrated de novo protein sequence annotation
-
(Web Server issue)
-
Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh S, et al.ANNIE: integrated de novo protein sequence annotation. Nucleic Acids Res.2009;37(Web Server issue):W435-40. doi:10.1093/nar/gkp254.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W435-W440
-
-
Ooi, H.S.1
Kwo, C.Y.2
Wildpaner, M.3
Sirota, F.L.4
Eisenhaber, B.5
Maurer-Stroh, S.6
-
102
-
-
0019934717
-
The helical hydrophobic moment: a measure of the amphiphilicity of a helix
-
Eisenberg D, Weiss RM, Terwilliger TC. The helical hydrophobic moment: a measure of the amphiphilicity of a helix. Nature. 1982;299(5881):371-4.
-
(1982)
Nature
, vol.299
, Issue.5881
, pp. 371-374
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
|