메뉴 건너뛰기




Volumn 47, Issue 4, 2015, Pages 338-344

Germline gain-of-function mutations in AFF4 cause a developmental syndrome functionally linking the super elongation complex and cohesin

(22)  Izumi, Kosuke a,b   Nakato, Ryuichiro b   Zhang, Zhe a   Edmondson, Andrew C a   Noon, Sarah a   Dulik, Matthew C a   Rajagopalan, Ramakrishnan a   Venditti, Charles P c   Gripp, Karen d   Samanich, Joy e   Zackai, Elaine H a,f   Deardorff, Matthew A a,f   Clark, Dinah a   Allen, Julian L a,f   Dorsett, Dale g   Misulovin, Ziva g   Komata, Makiko b   Bando, Masashige b   Kaur, Maninder a   Katou, Yuki b   more..


Author keywords

[No Author keywords available]

Indexed keywords

COHESIN; ELONGATION FACTOR; RNA POLYMERASE II; SUPER ELONGATION COMPLEX; TRANSCRIPTOME; UNCLASSIFIED DRUG; AFF4 PROTEIN, HUMAN; CELL CYCLE PROTEIN; DNA DIRECTED RNA POLYMERASE; MULTIPROTEIN COMPLEX; NONHISTONE PROTEIN; REPRESSOR PROTEIN; RNA POLYMERASE ALPHA SUBUNIT; TRANSCRIPTION ELONGATION FACTOR;

EID: 84925840671     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3229     Document Type: Article
Times cited : (100)

References (42)
  • 1
    • 79960401863 scopus 로고    scopus 로고
    • Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC)
    • Lin, C. et al. Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC). Genes Dev. 25, 1486-1498 (2011)
    • (2011) Genes Dev. , vol.25 , pp. 1486-1498
    • Lin, C.1
  • 2
    • 84872393129 scopus 로고    scopus 로고
    • Transcription elongation factors DSIF and NELF: Promoter-proximal pausing and beyond
    • Yamaguchi, Y., Shibata, H. & Handa, H. Transcription elongation factors DSIF and NELF: promoter-proximal pausing and beyond. Biochim. Biophys. Acta 1829, 98-104 (2013)
    • (2013) Biochim. Biophys. Acta , pp. 98-104
    • Yamaguchi, Y.1    Shibata, H.2    Handa, H.3
  • 3
    • 84872405841 scopus 로고    scopus 로고
    • Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription
    • Heidemann, M., Hintermair, C., Voß, K. & Eick, D. Dynamic phosphorylation patterns of RNA polymerase II CTD during transcription. Biochim. Biophys. Acta 1829, 55-62 (2013)
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 55-62
    • Heidemann, M.1    Hintermair, C.2    Voß, K.3    Eick, D.4
  • 4
    • 75949126139 scopus 로고    scopus 로고
    • AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia
    • Lin, C. et al. AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia. Mol. Cell 37, 429-437 (2010)
    • (2010) Mol. Cell , vol.37 , pp. 429-437
    • Lin, C.1
  • 5
    • 70350169074 scopus 로고    scopus 로고
    • Cornelia de Lange syndrome, cohesin, and beyond
    • Liu, J. & Krantz, I.D. Cornelia de Lange syndrome, cohesin, and beyond. Clin. Genet. 76, 303-314 (2009)
    • (2009) Clin. Genet. , vol.76 , pp. 303-314
    • Liu, J.1    Krantz, I.D.2
  • 6
    • 4544253309 scopus 로고    scopus 로고
    • NIPBL mutational analysis in 120 individuals with Cornelia de Lange syndrome and evaluation of genotype-phenotype correlations
    • Gillis, L.A. et al. NIPBL mutational analysis in 120 individuals with Cornelia de Lange syndrome and evaluation of genotype-phenotype correlations. Am. J. Hum. Genet. 75, 610-623 (2004)
    • (2004) Am. J. Hum. Genet. , vol.75 , pp. 610-623
    • Gillis, L.A.1
  • 7
    • 33847196427 scopus 로고    scopus 로고
    • Mutations in cohesin complex members SMC3 and SMC1A cause a mild variant of Cornelia de Lange syndrome with predominant mental retardation
    • Deardorff, M.A. et al. Mutations in cohesin complex members SMC3 and SMC1A cause a mild variant of Cornelia de Lange syndrome with predominant mental retardation. Am. J. Hum. Genet. 80, 485-494 (2007)
    • (2007) Am. J. Hum. Genet. , vol.80 , pp. 485-494
    • Deardorff, M.A.1
  • 8
    • 84862142852 scopus 로고    scopus 로고
    • RAD21 mutations cause a human cohesinopathy
    • Deardorff, M.A. et al. RAD21 mutations cause a human cohesinopathy. Am. J. Hum. Genet. 90, 1014-1027 (2012)
    • (2012) Am. J. Hum. Genet. , vol.90 , pp. 1014-1027
    • Deardorff, M.A.1
  • 9
    • 84866183822 scopus 로고    scopus 로고
    • HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle
    • Deardorff, M.A. et al. HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle. Nature 489, 313-317 (2012)
    • (2012) Nature , vol.489 , pp. 313-317
    • Deardorff, M.A.1
  • 10
    • 0037337235 scopus 로고    scopus 로고
    • A mutation in Af4 is predicted to cause cerebellar ataxia and cataracts in the robotic mouse
    • Isaacs, A.M. et al. A mutation in Af4 is predicted to cause cerebellar ataxia and cataracts in the robotic mouse. J. Neurosci. 23, 1631-1637 (2003)
    • (2003) J. Neurosci , vol.23 , pp. 1631-1637
    • Isaacs, A.M.1
  • 12
    • 84864020768 scopus 로고    scopus 로고
    • The super elongation complex family of RNA polymerase II elongation factors: Gene target specificity and transcriptional output
    • Luo, Z. et al. The super elongation complex family of RNA polymerase II elongation factors: gene target specificity and transcriptional output. Mol. Cell. Biol. 32, 2608-2617 (2012)
    • (2012) Mol. Cell. Biol. , vol.32 , pp. 2608-2617
    • Luo, Z.1
  • 13
    • 84860780495 scopus 로고    scopus 로고
    • De novo mutations revealed by whole-exome sequencing are strongly associated with autism
    • Sanders, S.J. et al. De novo mutations revealed by whole-exome sequencing are strongly associated with autism. Nature 485, 237-241 (2012)
    • (2012) Nature , vol.485 , pp. 237-241
    • Sanders, S.J.1
  • 14
    • 79957589237 scopus 로고    scopus 로고
    • Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations
    • O'Roak, B.J. et al. Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations. Nat. Genet. 43, 585-589 (2011)
    • (2011) Nat. Genet. , vol.43 , pp. 585-589
    • O'roak, B.J.1
  • 15
    • 22544457583 scopus 로고    scopus 로고
    • Infertility with defective spermiogenesis in mice lacking AF5q31, the target of chromosomal translocation in human infant leukemia
    • Urano, A. et al. Infertility with defective spermiogenesis in mice lacking AF5q31, the target of chromosomal translocation in human infant leukemia. Mol. Cell. Biol. 25, 6834-6845 (2005)
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 6834-6845
    • Urano, A.1
  • 16
    • 33644856869 scopus 로고    scopus 로고
    • Molecular cytogenetic analysis of a de novo interstitial deletion of 5q23. 3q31.2 and its phenotypic consequences
    • Tzschach, A. et al. Molecular cytogenetic analysis of a de novo interstitial deletion of 5q23.3q31.2 and its phenotypic consequences. Am. J. Med. Genet. A. 140, 496-502 (2006)
    • (2006) Am. J. Med. Genet. A. , vol.140 , pp. 496-502
    • Tzschach, A.1
  • 17
    • 80054711549 scopus 로고    scopus 로고
    • Genetic and genomic analyses of RNA polymerase II-pausing factor in regulation of mammalian transcription and cell growth
    • Sun, J. et al. Genetic and genomic analyses of RNA polymerase II-pausing factor in regulation of mammalian transcription and cell growth. J. Biol. Chem. 286, 36248-36257 (2011)
    • (2011) J. Biol. Chem. , vol.286 , pp. 36248-36257
    • Sun, J.1
  • 18
    • 0035891271 scopus 로고    scopus 로고
    • The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription
    • Yang, Z., Zhu, Q., Luo, K. & Zhou, Q. The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription. Nature 414, 317-322 (2001)
    • (2001) Nature , vol.414 , pp. 317-322
    • Yang, Z.1    Zhu, Q.2    Luo, K.3    Zhou, Q.4
  • 19
    • 0035891288 scopus 로고    scopus 로고
    • 7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes
    • Nguyen, V.T., Kiss, T., Michels, A.A. & Bensaude, O. 7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes. Nature 414, 322-325 (2001)
    • (2001) Nature , vol.414 , pp. 322-325
    • Nguyen, V.T.1    Kiss, T.2    Michels, A.A.3    Bensaude, O.4
  • 20
    • 23744514308 scopus 로고    scopus 로고
    • The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription
    • Jang, M.K. et al. The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription. Mol. Cell 19, 523-534 (2005)
    • (2005) Mol. Cell , vol.19 , pp. 523-534
    • Jang, M.K.1
  • 21
    • 23744467035 scopus 로고    scopus 로고
    • Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4
    • Yang, Z. et al. Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4. Mol. Cell 19, 535-545 (2005)
    • (2005) Mol. Cell , vol.19 , pp. 535-545
    • Yang, Z.1
  • 22
    • 0033429143 scopus 로고    scopus 로고
    • AF5q31, a newly identified AF4-related gene, is fused to MLL in infant acute lymphoblastic leukemia with ins(5;11)(q31;q13q23)
    • Taki, T. et al. AF5q31, a newly identified AF4-related gene, is fused to MLL in infant acute lymphoblastic leukemia with ins(5;11)(q31;q13q23). Proc. Natl. Acad. Sci. USA 96, 14535-14540 (1999)
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 14535-14540
    • Taki, T.1
  • 23
    • 84862006704 scopus 로고    scopus 로고
    • Regulation of AMP-activated protein kinase signaling by AFF4 protein, member of AF4 (ALL1-fused gene from chromosome 4) family of transcription factors, in hypothalamic neurons
    • Komori, T. et al. Regulation of AMP-activated protein kinase signaling by AFF4 protein, member of AF4 (ALL1-fused gene from chromosome 4) family of transcription factors, in hypothalamic neurons. J. Biol. Chem. 287, 19985-19996 (2012)
    • (2012) J. Biol. Chem. , vol.287 , pp. 19985-19996
    • Komori, T.1
  • 24
    • 66249144416 scopus 로고    scopus 로고
    • Transcriptional dysregulation in NIPBL and cohesin mutant human cells
    • Liu, J. et al. Transcriptional dysregulation in NIPBL and cohesin mutant human cells. PLoS Biol. 7, e1000119 (2009)
    • (2009) PLoS Biol. , vol.7 , pp. e1000119
    • Liu, J.1
  • 25
    • 39149121436 scopus 로고    scopus 로고
    • Cohesin mediates transcriptional insulation by CCCTC-binding factor
    • Wendt, K.S. et al. Cohesin mediates transcriptional insulation by CCCTC-binding factor. Nature 451, 796-801 (2008)
    • (2008) Nature , vol.451 , pp. 796-801
    • Wendt, K.S.1
  • 26
    • 77957139539 scopus 로고    scopus 로고
    • Mediator and cohesin connect gene expression and chromatin architecture
    • Kagey, M.H. et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 467, 430-435 (2010)
    • (2010) Nature , vol.467 , pp. 430-435
    • Kagey, M.H.1
  • 27
    • 84860507563 scopus 로고    scopus 로고
    • Cohesin-SA1 deficiency drives aneuploidy and tumourigenesis in mice due to impaired replication of telomeres
    • Remeseiro, S. et al. Cohesin-SA1 deficiency drives aneuploidy and tumourigenesis in mice due to impaired replication of telomeres. EMBO J. 31, 2076-2089 (2012)
    • (2012) EMBO J. , vol.31 , pp. 2076-2089
    • Remeseiro, S.1
  • 28
  • 29
    • 84876010302 scopus 로고    scopus 로고
    • Genome-wide control of RNA polymerase II activity by cohesin
    • Schaaf, C.A. et al. Genome-wide control of RNA polymerase II activity by cohesin. PLoS Genet. 9, e1003382 (2013)
    • (2013) PLoS Genet. , vol.9 , pp. e1003382
    • Schaaf, C.A.1
  • 30
    • 84922068409 scopus 로고    scopus 로고
    • The Scc2-Scc4 complex acts in sister chromatid cohesion and transcriptional regulation by maintaining nucleosome-free regions
    • Lopez-Serra, L., Kelly, G., Patel, H., Stewart, A. & Uhlmann, F. The Scc2-Scc4 complex acts in sister chromatid cohesion and transcriptional regulation by maintaining nucleosome-free regions. Nat. Genet. 46, 1147-1151 (2014)
    • (2014) Nat. Genet. , vol.46 , pp. 1147-1151
    • Lopez-Serra, L.1    Kelly, G.2    Patel, H.3    Stewart, A.4    Uhlmann, F.5
  • 31
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo, M.A. et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498 (2011)
    • (2011) Nat. Genet. , vol.43 , pp. 491-498
    • Depristo, M.A.1
  • 32
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; Iso-2; iso-3
    • Cingolani, P. et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin) 6, 80-92 (2012)
    • (2012) Fly (Austin) , vol.6 , pp. 80-92
    • Cingolani, P.1
  • 33
    • 84885021313 scopus 로고    scopus 로고
    • Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms
    • Kon, A. et al. Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms. Nat. Genet. 45, 1232-1237 (2013)
    • (2013) Nat. Genet. , vol.45 , pp. 1232-1237
    • Kon, A.1
  • 34
    • 84922480037 scopus 로고    scopus 로고
    • Regulation of RNA polymerase II activation by histone acetylation in single living cells
    • Stasevich, T.J. et al. Regulation of RNA polymerase II activation by histone acetylation in single living cells. Nature 516, 272-275 (2014)
    • (2014) Nature , vol.516 , pp. 272-275
    • Stasevich, T.J.1
  • 35
    • 84858256924 scopus 로고    scopus 로고
    • A single administration of morpholino antisense oligomer rescues spinal muscular atrophy in mouse
    • Porensky, P.N. et al. A single administration of morpholino antisense oligomer rescues spinal muscular atrophy in mouse. Hum. Mol. Genet. 21, 1625-1638 (2012)
    • (2012) Hum. Mol. Genet. , vol.21 , pp. 1625-1638
    • Porensky, P.N.1
  • 36
    • 84879009506 scopus 로고    scopus 로고
    • Droplet DigitalTM PCR quantitation of HER2 expression in FFPE breast cancer samples
    • Heredia, N.J. et al. Droplet DigitalTM PCR quantitation of HER2 expression in FFPE breast cancer samples. Methods 59, S20-S23 (2013)
    • (2013) Methods , vol.59 , pp. S20-S23
    • Heredia, N.J.1
  • 37
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013)
    • (2013) Genome Biol. , vol.14 , pp. R36
    • Kim, D.1
  • 38
    • 84872198346 scopus 로고    scopus 로고
    • Differential analysis of gene regulation at transcript resolution with RNA-seq
    • Trapnell, C. et al. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat. Biotechnol. 31, 46-53 (2013)
    • (2013) Nat. Biotechnol. , vol.31 , pp. 46-53
    • Trapnell, C.1
  • 39
    • 84922482130 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation protocol for mammalian cells
    • Komata, M. et al. Chromatin immunoprecipitation protocol for mammalian cells. Methods Mol. Biol. 1164, 33-38 (2014)
    • (2014) Methods Mol. Biol. , vol.1164 , pp. 33-38
    • Komata, M.1
  • 40
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009)
    • (2009) Genome Biol. , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 41
    • 84879412369 scopus 로고    scopus 로고
    • DROMPA: Easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data
    • Nakato, R., Itoh, T. & Shirahige, K. DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data. Genes Cells 18, 589-601 (2013)
    • (2013) Genes Cells , vol.18 , pp. 589-601
    • Nakato, R.1    Itoh, T.2    Shirahige, K.3
  • 42
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • Mali, P. et al. RNA-guided human genome engineering via Cas9. Science 339, 823-826 (2013).
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.