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Volumn 46, Issue 10, 2014, Pages 1147-1151

The Scc2-Scc4 complex acts in sister chromatid cohesion and transcriptional regulation by maintaining nucleosome-free regions

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME PROTEIN; COHESIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SCC2; TRANSCRIPTION FACTOR SCC4; UNCLASSIFIED DRUG; CHROMATIN; NONHISTONE PROTEIN; NUCLEOSOME; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE PROTEIN; SCC2 PROTEIN, S CEREVISIAE; SCC4 PROTEIN, S CEREVISIAE;

EID: 84922068409     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3080     Document Type: Article
Times cited : (101)

References (52)
  • 1
    • 73349127026 scopus 로고    scopus 로고
    • Its roles and mechanisms
    • Nasmyth, K. & Haering, C.H. Cohesin: its roles and mechanisms. Annu. Rev. Genet. 43, 525-558 (2009).
    • (2009) Annu. Rev. Genet. , vol.43 , pp. 525-558
    • Nasmyth, K.1    Haering, C.H.2
  • 3
    • 79953162010 scopus 로고    scopus 로고
    • Cohesin: Genomic insights into controlling gene transcription and development
    • Dorsett, D. Cohesin: genomic insights into controlling gene transcription and development. Curr. Opin. Genet. Dev. 21, 199-206 (2011).
    • (2011) Curr. Opin. Genet. Dev. , vol.21 , pp. 199-206
    • Dorsett, D.1
  • 4
    • 0034312307 scopus 로고    scopus 로고
    • Characterization of fssion yeast cohesin: Essential anaphase proteolysis of Rad21 phosphorylated in the S phase
    • Tomonaga, T. et al. Characterization of fssion yeast cohesin: essential anaphase proteolysis of Rad21 phosphorylated in the S phase. Genes Dev. 14, 2757-2770 (2000).
    • (2000) Genes Dev. , vol.14 , pp. 2757-2770
    • Tomonaga, T.1
  • 5
    • 0033859660 scopus 로고    scopus 로고
    • Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins
    • Ciosk, R. et al. Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins. Mol. Cell 5, 243-254 (2000).
    • (2000) Mol. Cell , vol.5 , pp. 243-254
    • Ciosk, R.1
  • 6
    • 4644280172 scopus 로고    scopus 로고
    • Scc2 couples replication licensing to sister chromatid cohesion in Xenopus egg extracts
    • Gillespie, P.J. & Hirano, T. Scc2 couples replication licensing to sister chromatid cohesion in Xenopus egg extracts. Curr. Biol. 14, 1598-1603 (2004).
    • (2004) Curr. Biol. , vol.14 , pp. 1598-1603
    • Gillespie, P.J.1    Hirano, T.2
  • 7
    • 0022688433 scopus 로고
    • On the nosology of the Cornelia de Lange and Coffn-Siris syndromes
    • Fryns, J.-P. On the nosology of the Cornelia de Lange and Coffn-Siris syndromes. Clin. Genet. 29, 263-264 (1986).
    • (1986) Clin. Genet. , vol.29 , pp. 263-264
    • Fryns, J.-P.1
  • 8
    • 2642542322 scopus 로고    scopus 로고
    • Cornelia de Lange syndrome is caused by mutations in NIPBL, the human homolog of Drosophila melanogaster Nipped-B
    • Krantz, I.D. et al. Cornelia de Lange syndrome is caused by mutations in NIPBL, the human homolog of Drosophila melanogaster Nipped-B. Nat. Genet. 36, 631-635 (2004).
    • (2004) Nat. Genet. , vol.36 , pp. 631-635
    • Krantz, I.D.1
  • 9
    • 84899480136 scopus 로고    scopus 로고
    • Coffn-Siris syndrome is a SWI/SNF complex disorder
    • Tsurusaki, Y. et al. Coffn-Siris syndrome is a SWI/SNF complex disorder. Clin. Genet. 85, 548-554 (2014).
    • (2014) Clin. Genet. , vol.85 , pp. 548-554
    • Tsurusaki, Y.1
  • 10
    • 84892617115 scopus 로고    scopus 로고
    • Biochemical reconstitution of topological DNA binding by the cohesin ring
    • Murayama, Y. & Uhlmann, F. Biochemical reconstitution of topological DNA binding by the cohesin ring. Nature 505, 367-371 (2014).
    • (2014) Nature , vol.505 , pp. 367-371
    • Murayama, Y.1    Uhlmann, F.2
  • 11
    • 3242880374 scopus 로고    scopus 로고
    • Cohesin relocation from sites of chromosomal loading to places of convergent transcription
    • Lengronne, A. et al. Cohesin relocation from sites of chromosomal loading to places of convergent transcription. Nature 430, 573-578 (2004).
    • (2004) Nature , vol.430 , pp. 573-578
    • Lengronne, A.1
  • 12
    • 50049126078 scopus 로고    scopus 로고
    • Identifcation of cis-acting sites for condensin loading onto budding yeast chromosomes
    • D'Ambrosio, C. et al. Identifcation of cis-acting sites for condensin loading onto budding yeast chromosomes. Genes Dev. 22, 2215-2227 (2008).
    • (2008) Genes Dev. , vol.22 , pp. 2215-2227
    • D'Ambrosio, C.1
  • 13
    • 38349177548 scopus 로고    scopus 로고
    • Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome
    • Misulovin, Z. et al. Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome. Chromosoma 117, 89-102 (2008).
    • (2008) Chromosoma , vol.117 , pp. 89-102
    • Misulovin, Z.1
  • 14
    • 66249086197 scopus 로고    scopus 로고
    • Conserved features of cohesin binding along fssion yeast chromosomes
    • Schmidt, C.K., Brookes, N. & Uhlmann, F. Conserved features of cohesin binding along fssion yeast chromosomes. Genome Biol. 10, R52 (2009).
    • (2009) Genome Biol. , vol.10 , pp. R52
    • Schmidt, C.K.1    Brookes, N.2    Uhlmann, F.3
  • 15
    • 77957139539 scopus 로고    scopus 로고
    • Mediator and cohesin connect gene expression and chromatin architecture
    • Kagey, M.H. et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 467, 430-435 (2010).
    • (2010) Nature , vol.467 , pp. 430-435
    • Kagey, M.H.1
  • 16
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in Saccharomyces cerevisiae
    • Lee, T.I. et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298, 799-804 (2002).
    • (2002) Science , vol.298 , pp. 799-804
    • Lee, T.I.1
  • 17
    • 26844489856 scopus 로고    scopus 로고
    • Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
    • Zhang, H., Roberts, D.N. & Cairns, B.R. Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell 123, 219-231 (2005).
    • (2005) Cell , vol.123 , pp. 219-231
    • Zhang, H.1    Roberts, D.N.2    Cairns, B.R.3
  • 18
    • 34748860813 scopus 로고    scopus 로고
    • Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae
    • Kasahara, K. et al. Assembly of regulatory factors on rRNA and ribosomal protein genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 27, 6686-6705 (2007).
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 6686-6705
    • Kasahara, K.1
  • 19
    • 23944462969 scopus 로고    scopus 로고
    • Genome-wide map of nucleosome acetylation and methylation in yeast
    • Pokholok, D.K. et al. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122, 517-527 (2005).
    • (2005) Cell , vol.122 , pp. 517-527
    • Pokholok, D.K.1
  • 20
    • 0031787969 scopus 로고    scopus 로고
    • Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
    • Roth, F.P., Hughes, J.D., Estep, P.W. & Church, G.M. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol. 16, 939-945 (1998).
    • (1998) Nat. Biotechnol. , vol.16 , pp. 939-945
    • Roth, F.P.1    Hughes, J.D.2    Estep, P.W.3    Church, G.M.4
  • 21
    • 34748826166 scopus 로고    scopus 로고
    • A high-resolution atlas of nucleosome occupancy in yeast
    • Lee, W. et al. A high-resolution atlas of nucleosome occupancy in yeast. Nat. Genet. 39, 1235-1244 (2007).
    • (2007) Nat. Genet. , vol.39 , pp. 1235-1244
    • Lee, W.1
  • 22
    • 0036205048 scopus 로고    scopus 로고
    • Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex
    • Ng, H.H., Robert, F., Young, R.A. & Struhl, K. Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex. Genes Dev. 16, 806-819 (2002).
    • (2002) Genes Dev. , vol.16 , pp. 806-819
    • Ng, H.H.1    Robert, F.2    Young, R.A.3    Struhl, K.4
  • 23
    • 38049055816 scopus 로고    scopus 로고
    • RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes
    • Parnell, T.J., Huff, J.T. & Cairns, B.R. RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes. EMBO J. 27, 100-110 (2008).
    • (2008) EMBO J. , vol.27 , pp. 100-110
    • Parnell, T.J.1    Huff, J.T.2    Cairns, B.R.3
  • 24
    • 57749121616 scopus 로고    scopus 로고
    • A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
    • Badis, G. et al. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol. Cell 32, 878-887 (2008).
    • (2008) Mol. Cell , vol.32 , pp. 878-887
    • Badis, G.1
  • 25
    • 1542328960 scopus 로고    scopus 로고
    • Identifcation and distinct regulation of yeast TATA box-containing genes
    • Basehoar, A.D., Zanton, S.J. & Pugh, B.F. Identifcation and distinct regulation of yeast TATA box-containing genes. Cell 116, 699-709 (2004).
    • (2004) Cell , vol.116 , pp. 699-709
    • Basehoar, A.D.1    Zanton, S.J.2    Pugh, B.F.3
  • 26
    • 11144244771 scopus 로고    scopus 로고
    • Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1
    • Schawalder, S.B. et al. Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1. Nature 432, 1058-1061 (2004).
    • (2004) Nature , vol.432 , pp. 1058-1061
    • Schawalder, S.B.1
  • 27
    • 33751163503 scopus 로고    scopus 로고
    • Effect of sequence-directed nucleosome disruption on cell-type-specifc repression by α2/Mcm1 in the yeast genome
    • Morohashi, N. et al. Effect of sequence-directed nucleosome disruption on cell-type-specifc repression by α2/Mcm1 in the yeast genome. Eukaryot. Cell 5, 1925-1933 (2006).
    • (2006) Eukaryot. Cell , vol.5 , pp. 1925-1933
    • Morohashi, N.1
  • 28
    • 0037194787 scopus 로고    scopus 로고
    • A chromatin remodelling complex that loads cohesin onto human chromosomes
    • Hakimi, M.-A. et al. A chromatin remodelling complex that loads cohesin onto human chromosomes. Nature 418, 994-998 (2002).
    • (2002) Nature , vol.418 , pp. 994-998
    • Hakimi, M.-A.1
  • 29
    • 1642499365 scopus 로고    scopus 로고
    • The ctf13-30/CTF13 genomic haploinsuffciency modifer screen identifes the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion
    • Baetz, K.K., Krogan, N.J., Emili, A., Greenblatt, J. & Hieter, P. The ctf13-30/CTF13 genomic haploinsuffciency modifer screen identifes the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion. Mol. Cell. Biol. 24, 1232-1244 (2004).
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 1232-1244
    • Baetz, K.K.1    Krogan, N.J.2    Emili, A.3    Greenblatt, J.4    Hieter, P.5
  • 30
    • 1642266517 scopus 로고    scopus 로고
    • The RSC nucleosome-remodelling complex is required for cohesin's association with chromosome arms
    • Huang, J., Hsu, J.-M. & Laurent, B.C. The RSC nucleosome-remodelling complex is required for cohesin's association with chromosome arms. Mol. Cell 13, 739-750 (2004).
    • (2004) Mol. Cell , vol.13 , pp. 739-750
    • Huang, J.1    Hsu, J.-M.2    Laurent, B.C.3
  • 31
    • 84866147738 scopus 로고    scopus 로고
    • The Drosophila Mi-2 chromatin-remodeling factor regulates higher-order chromatin structure and cohesin dynamics in vivo
    • Fasulo, B. et al. The Drosophila Mi-2 chromatin-remodeling factor regulates higher-order chromatin structure and cohesin dynamics in vivo. PLoS Genet. 8, e1002878 (2012).
    • (2012) PLoS Genet. , vol.8 , pp. e1002878
    • Fasulo, B.1
  • 32
    • 67650725820 scopus 로고    scopus 로고
    • The biology of chromatin remodeling complexes
    • Clapier, C.R. & Cairns, B.R. The biology of chromatin remodeling complexes. Annu. Rev. Biochem. 78, 273-304 (2009).
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 273-304
    • Clapier, C.R.1    Cairns, B.R.2
  • 33
    • 0031769946 scopus 로고    scopus 로고
    • Sth1p a Saccharomyces cerevisiae Snf2p/Swi2p homolog, is an essential ATPase in RSC and differs from Snf/Swi in its interactions with histones and chromatin-associated proteins
    • Du, J., Nasir, I., Benton, B.K., Kladde, M.P. & Laurent, B.C. Sth1p, a Saccharomyces cerevisiae Snf2p/Swi2p homolog, is an essential ATPase in RSC and differs from Snf/Swi in its interactions with histones and chromatin-associated proteins. Genetics 150, 987-1005 (1998).
    • (1998) Genetics , vol.150 , pp. 987-1005
    • Du, J.1    Nasir, I.2    Benton, B.K.3    Kladde, M.P.4    Laurent, B.C.5
  • 34
    • 66249144416 scopus 로고    scopus 로고
    • Transcriptional dysregulation in NIPBL and cohesin mutant human cells
    • Liu, J. et al. Transcriptional dysregulation in NIPBL and cohesin mutant human cells. PLoS Biol. 7, e1000119 (2009).
    • (2009) PLoS Biol. , vol.7 , pp. e1000119
    • Liu, J.1
  • 35
    • 84862830331 scopus 로고    scopus 로고
    • Mutations in SWI/SNF chromatin remodeling complex gene ARID1B cause Coffn-Siris syndrome
    • Santen, G.W. et al. Mutations in SWI/SNF chromatin remodeling complex gene ARID1B cause Coffn-Siris syndrome. Nat. Genet. 44, 379-380 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 379-380
    • Santen, G.W.1
  • 36
    • 47549096990 scopus 로고    scopus 로고
    • Cdc7-Drf1 kinase links chromosome cohesion to the initiation of DNA replication in Xenopus egg extracts
    • Takahashi, T.S., Basu, A., Bermudez, V., Hurwitz, J. & Walter, J.C. Cdc7-Drf1 kinase links chromosome cohesion to the initiation of DNA replication in Xenopus egg extracts. Genes Dev. 22, 1894-1905 (2008).
    • (2008) Genes Dev. , vol.22 , pp. 1894-1905
    • Takahashi, T.S.1    Basu, A.2    Bermudez, V.3    Hurwitz, J.4    Walter, J.C.5
  • 37
    • 36249021097 scopus 로고    scopus 로고
    • Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting
    • Ocampo-Hafalla, M.T., Katou, Y., Shirahige, K. & Uhlmann, F. Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting. Chromosoma 116, 531-544 (2007).
    • (2007) Chromosoma , vol.116 , pp. 531-544
    • Ocampo-Hafalla, M.T.1    Katou, Y.2    Shirahige, K.3    Uhlmann, F.4
  • 38
    • 0028676232 scopus 로고
    • New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae
    • Wach, A., Brachat, A., Pöhlmann, R. & Philippsen, P. New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast 10, 1793-1808 (1994).
    • (1994) Yeast , vol.10 , pp. 1793-1808
    • Wach, A.1    Brachat, A.2    Pöhlmann, R.3    Philippsen, P.4
  • 39
    • 0032775010 scopus 로고    scopus 로고
    • Epitope tagging of yeast genes using a PCR-based strategy: More tags and improved practical routines
    • Knop, M. et al. Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines. Yeast 15, 963-972 (1999).
    • (1999) Yeast , vol.15 , pp. 963-972
    • Knop, M.1
  • 40
    • 0037087284 scopus 로고    scopus 로고
    • Effcient PCR-based gene disruption in Saccharomyces strains using intergenic primers
    • Reid, R.J.D., Sunjevaric, I., Kedacche, M. & Rothstein, R. Effcient PCR-based gene disruption in Saccharomyces strains using intergenic primers. Yeast 19, 319-328 (2002).
    • (2002) Yeast , vol.19 , pp. 319-328
    • Reid, R.J.D.1    Sunjevaric, I.2    Kedacche, M.3    Rothstein, R.4
  • 41
    • 0032723678 scopus 로고    scopus 로고
    • Identifcation of target sites of the a2-Mcm1 repressor complex in the yeast genome
    • Zhong, H., McCord, R. & Vershon, A.K. Identifcation of target sites of the a2-Mcm1 repressor complex in the yeast genome. Genome Res. 9, 1040-1047 (1999).
    • (1999) Genome Res. , vol.9 , pp. 1040-1047
    • Zhong, H.1    McCord, R.2    Vershon, A.K.3
  • 42
    • 0033083727 scopus 로고    scopus 로고
    • Yeast Cohesin complex requires a conserved protein Eco1p (Ctf7) to establish cohesion between sister chromatids during DNA replication
    • Tóth, A. et al. Yeast Cohesin complex requires a conserved protein, Eco1p (Ctf7), to establish cohesion between sister chromatids during DNA replication. Genes Dev. 13, 320-333 (1999).
    • (1999) Genes Dev. , vol.13 , pp. 320-333
    • Tóth, A.1
  • 44
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
    • (2008) Genome Biol. , vol.9 , pp. R137
    • Zhang, Y.1
  • 46
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 47
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman, R.C. et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80 (2004).
    • (2004) Genome Biol. , vol.5 , pp. R80
    • Gentleman, R.C.1
  • 48
    • 12344280017 scopus 로고    scopus 로고
    • Summaries of Affymetrix GeneChip probe level data
    • Irizarry, R.A. et al. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 31, e15 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. e15
    • Irizarry, R.A.1
  • 50
    • 33645785104 scopus 로고    scopus 로고
    • A high-resolution map of transcription in the yeast genome
    • David, L. et al. A high-resolution map of transcription in the yeast genome. Proc. Natl. Acad. Sci. USA 103, 5320-5325 (2006).
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 5320-5325
    • David, L.1
  • 51
    • 0030885925 scopus 로고    scopus 로고
    • Chromosomal proteins that prevent premature separation of sister chromatids
    • Michaelis, C., Ciosk, R. & Nasmyth, K. Cohesins: Chromosomal proteins that prevent premature separation of sister chromatids. Cell 91, 35-45 (1997).
    • (1997) Cell , vol.91 , pp. 35-45
    • Michaelis, C.1    Ciosk, R.2    Cohesins, N.K.3
  • 52
    • 84870540646 scopus 로고    scopus 로고
    • The INO80 chromatin remodeling complex prevents polyploidy and maintains normal chromatin structure at centromeres
    • Chambers, A.L. et al. The INO80 chromatin remodeling complex prevents polyploidy and maintains normal chromatin structure at centromeres. Genes Dev. 26, 2590-2603 (2012).
    • (2012) Genes Dev. , vol.26 , pp. 2590-2603
    • Chambers, A.L.1


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