메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Targeted resequencing of GWAS loci reveals novel genetic variants for milk production traits

Author keywords

Genetic variants; Milk production traits; Targeted resequencing

Indexed keywords

MESSENGER RNA;

EID: 84925677026     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-1105     Document Type: Article
Times cited : (63)

References (39)
  • 1
    • 84876554236 scopus 로고    scopus 로고
    • Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era
    • Database issue
    • Hu ZL, Park CA, Wu XL, Reecy JM: Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era. Nucleic acids research 2013,41(Database issue):D871-879.
    • (2013) Nucleic acids research , vol.41 , pp. D871-879
    • Hu, Z.L.1    Park, C.A.2    Wu, X.L.3    Reecy, J.M.4
  • 2
    • 33747828444 scopus 로고    scopus 로고
    • The role of the bovine growth hormone receptor and prolactin receptor genes in milk, fat and protein production in Finnish Ayrshire dairy cattle
    • Viitala S, Szyda J, Blott S, Schulman N, Lidauer M, Maki-Tanila A, Georges M, Vilkki J: The role of the bovine growth hormone receptor and prolactin receptor genes in milk, fat and protein production in Finnish Ayrshire dairy cattle. Genetics 2006,173(4):2151-2164. 10.1534/genetics.105.046730.
    • (2006) Genetics , vol.173 , Issue.4 , pp. 2151-2164
    • Viitala, S.1    Szyda, J.2    Blott, S.3    Schulman, N.4    Lidauer, M.5    Maki-Tanila, A.6    Georges, M.7    Vilkki, J.8
  • 4
    • 0036175484 scopus 로고    scopus 로고
    • Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition
    • Grisart B, Coppieters W, Farnir F, Karim L, Ford C, Berzi P, Cambisano N, Mni M, Reid S, Simon P, Spelman R, Georges M, Snell R: Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res 2002,12(2):222-231. 10.1101/gr.224202.
    • (2002) Genome Res , vol.12 , Issue.2 , pp. 222-231
    • Grisart, B.1    Coppieters, W.2    Farnir, F.3    Karim, L.4    Ford, C.5    Berzi, P.6    Cambisano, N.7    Mni, M.8    Reid, S.9    Simon, P.10    Spelman, R.11    Georges, M.12    Snell, R.13
  • 5
    • 0037047067 scopus 로고    scopus 로고
    • Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol acyltransferase (DGAT1) with variation at a quantitative trait locus for milk fat content
    • Winter A, Kramer W, Werner FA, Kollers S, Kata S, Durstewitz G, Buitkamp J, Womack JE, Thaller G, Fries R: Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol acyltransferase (DGAT1) with variation at a quantitative trait locus for milk fat content. Proc Natl Acad Sci U S A 2002,99(14):9300-9305. 10.1073/pnas.142293799.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , Issue.14 , pp. 9300-9305
    • Winter, A.1    Kramer, W.2    Werner, F.A.3    Kollers, S.4    Kata, S.5    Durstewitz, G.6    Buitkamp, J.7    Womack, J.E.8    Thaller, G.9    Fries, R.10
  • 7
    • 59349098163 scopus 로고    scopus 로고
    • Invited review: genomic selection in dairy cattle: progress and challenges
    • Hayes BJ, Bowman PJ, Chamberlain AJ, Goddard ME: Invited review: genomic selection in dairy cattle: progress and challenges. J Dairy Sci 2009,92(2):433-443. 10.3168/jds.2008-1646.
    • (2009) J Dairy Sci , vol.92 , Issue.2 , pp. 433-443
    • Hayes, B.J.1    Bowman, P.J.2    Chamberlain, A.J.3    Goddard, M.E.4
  • 8
    • 84879182023 scopus 로고    scopus 로고
    • The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation
    • Hayes BJ, Lewin HA, Goddard ME: The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation. Trends Genet 2013,29(4):206-214. 10.1016/j.tig.2012.11.009.
    • (2013) Trends Genet , vol.29 , Issue.4 , pp. 206-214
    • Hayes, B.J.1    Lewin, H.A.2    Goddard, M.E.3
  • 9
    • 79956273022 scopus 로고    scopus 로고
    • The genomic evaluation system in the United States: past, present, future
    • Wiggans GR, Vanraden PM, Cooper TA: The genomic evaluation system in the United States: past, present, future. J Dairy Sci 2011,94(6):3202-3211. 10.3168/jds.2010-3866.
    • (2011) J Dairy Sci , vol.94 , Issue.6 , pp. 3202-3211
    • Wiggans, G.R.1    Vanraden, P.M.2    Cooper, T.A.3
  • 10
    • 78149436393 scopus 로고    scopus 로고
    • Genome wide association studies for milk production traits in Chinese Holstein population
    • Jiang L, Liu J, Sun D, Ma P, Ding X, Yu Y, Zhang Q: Genome wide association studies for milk production traits in Chinese Holstein population. PLoS One 2010,5(10):e13661. 10.1371/journal.pone.0013661.
    • (2010) PLoS One , vol.5 , Issue.10 , pp. e13661
    • Jiang, L.1    Liu, J.2    Sun, D.3    Ma, P.4    Ding, X.5    Yu, Y.6    Zhang, Q.7
  • 11
    • 78049233409 scopus 로고    scopus 로고
    • A genome-wide association study for milk production traits in Danish Jersey cattle using a 50 K single nucleotide polymorphism chip
    • Mai MD, Sahana G, Christiansen FB, Guldbrandtsen B: A genome-wide association study for milk production traits in Danish Jersey cattle using a 50 K single nucleotide polymorphism chip. J Anim Sci 2010,88(11):3522-3528. 10.2527/jas.2009-2713.
    • (2010) J Anim Sci , vol.88 , Issue.11 , pp. 3522-3528
    • Mai, M.D.1    Sahana, G.2    Christiansen, F.B.3    Guldbrandtsen, B.4
  • 12
    • 77953895118 scopus 로고    scopus 로고
    • A validated genome-wide association study in 2 dairy cattle breeds for milk production and fertility traits using variable length haplotypes
    • Pryce JE, Bolormaa S, Chamberlain AJ, Bowman PJ, Savin K, Goddard ME, Hayes BJ: A validated genome-wide association study in 2 dairy cattle breeds for milk production and fertility traits using variable length haplotypes. J Dairy Sci 2010,93(7):3331-3345. 10.3168/jds.2009-2893.
    • (2010) J Dairy Sci , vol.93 , Issue.7 , pp. 3331-3345
    • Pryce, J.E.1    Bolormaa, S.2    Chamberlain, A.J.3    Bowman, P.J.4    Savin, K.5    Goddard, M.E.6    Hayes, B.J.7
  • 19
    • 73449142861 scopus 로고    scopus 로고
    • DNA sequence capture and enrichment by microarray followed by next-generation sequencing for targeted resequencing: neurofibromatosis type 1 gene as a model
    • Chou LS, Liu CS, Boese B, Zhang X, Mao R: DNA sequence capture and enrichment by microarray followed by next-generation sequencing for targeted resequencing: neurofibromatosis type 1 gene as a model. Clin Chem 2010,56(1):62-72. 10.1373/clinchem.2009.132639.
    • (2010) Clin Chem , vol.56 , Issue.1 , pp. 62-72
    • Chou, L.S.1    Liu, C.S.2    Boese, B.3    Zhang, X.4    Mao, R.5
  • 20
    • 84925652737 scopus 로고    scopus 로고
    • The cattle dbSNP.
    • The cattle dbSNP. ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/cow_9913/
  • 21
    • 84894530273 scopus 로고    scopus 로고
    • Why breeding values estimated using familial data should not be used for genome-wide association studies
    • Ekine CC, Rowe SJ, Bishop SC, de Koning DJ: Why breeding values estimated using familial data should not be used for genome-wide association studies. G3 (Bethesda) 2014,4(2):341-347. 2014
    • (2014) G3 (Bethesda) , vol.4 , Issue.2 , pp. 341-347
    • Ekine, C.C.1    Rowe, S.J.2    Bishop, S.C.3    de Koning, D.J.4
  • 22
    • 84865335417 scopus 로고    scopus 로고
    • Genome-wide association mapping of milk production traits in Braunvieh cattle
    • Maxa J, Neuditschko M, Russ I, Forster M, Medugorac I: Genome-wide association mapping of milk production traits in Braunvieh cattle. J Dairy Sci 2012,95(9):5357-5364. 10.3168/jds.2011-4673.
    • (2012) J Dairy Sci , vol.95 , Issue.9 , pp. 5357-5364
    • Maxa, J.1    Neuditschko, M.2    Russ, I.3    Forster, M.4    Medugorac, I.5
  • 24
    • 84886240572 scopus 로고    scopus 로고
    • Genome-wide association analysis to identify genotype x environment interaction for milk protein yield and level of somatic cell score as environmental descriptors in German Holsteins
    • Streit M, Reinhardt F, Thaller G, Bennewitz J: Genome-wide association analysis to identify genotype x environment interaction for milk protein yield and level of somatic cell score as environmental descriptors in German Holsteins. J Dairy Sci 2013,96(11):7318-7324. 10.3168/jds.2013-7133.
    • (2013) J Dairy Sci , vol.96 , Issue.11 , pp. 7318-7324
    • Streit, M.1    Reinhardt, F.2    Thaller, G.3    Bennewitz, J.4
  • 25
    • 84893656971 scopus 로고    scopus 로고
    • Genome-wide Scan For Positional And Functional Candidate Genes Affecting Milk Production Traits In Canadian Holstein Cattle
    • The 9th World Congress on Genetics Applied to Livestock Production (WCGALP) Leipzig, Germany
    • Li H, Wang Z, Moore SS, Schenkel FS, Stothard P: Genome-wide Scan For Positional And Functional Candidate Genes Affecting Milk Production Traits In Canadian Holstein Cattle. The 9th World Congress on Genetics Applied to Livestock Production (WCGALP) Leipzig, Germany 2010.
    • (2010)
    • Li, H.1    Wang, Z.2    Moore, S.S.3    Schenkel, F.S.4    Stothard, P.5
  • 28
    • 80053648989 scopus 로고    scopus 로고
    • The F279Y polymorphism of the GHR gene and its relation to milk production and somatic cell score in German Holstein dairy cattle
    • Rahmatalla SA, Muller U, Strucken EM, Reissmann M, Brockmann GA: The F279Y polymorphism of the GHR gene and its relation to milk production and somatic cell score in German Holstein dairy cattle. J Appl Genet 2011,52(4):459-465. 10.1007/s13353-011-0051-3.
    • (2011) J Appl Genet , vol.52 , Issue.4 , pp. 459-465
    • Rahmatalla, S.A.1    Muller, U.2    Strucken, E.M.3    Reissmann, M.4    Brockmann, G.A.5
  • 30
    • 66249125961 scopus 로고    scopus 로고
    • Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome
    • Maningat PD, Sen P, Rijnkels M, Sunehag AL, Hadsell DL, Bray M, Haymond MW: Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome. Physiol Genomics 2009,37(1):12-22. 10.1152/physiolgenomics.90341.2008.
    • (2009) Physiol Genomics , vol.37 , Issue.1 , pp. 12-22
    • Maningat, P.D.1    Sen, P.2    Rijnkels, M.3    Sunehag, A.L.4    Hadsell, D.L.5    Bray, M.6    Haymond, M.W.7
  • 31
    • 84861839112 scopus 로고    scopus 로고
    • Characterization of sheep milk fat globule proteins by two-dimensional polyacrylamide gel electrophoresis/mass spectrometry and generation of a reference map
    • Pisanu S, Ghisaura S, Pagnozzi D, Falchi G, Biosa G, Tanca A, Roggio T, Uzzau S, Addis MF: Characterization of sheep milk fat globule proteins by two-dimensional polyacrylamide gel electrophoresis/mass spectrometry and generation of a reference map. International Dairy Journal 2012, 24:78-86. 10.1016/j.idairyj.2011.05.009.
    • (2012) International Dairy Journal , vol.24 , pp. 78-86
    • Pisanu, S.1    Ghisaura, S.2    Pagnozzi, D.3    Falchi, G.4    Biosa, G.5    Tanca, A.6    Roggio, T.7    Uzzau, S.8    Addis, M.F.9
  • 32
    • 66349124432 scopus 로고    scopus 로고
    • GPIHBP1, a GPI-anchored protein required for the lipolytic processing of triglyceride-rich lipoproteins
    • Beigneux AP, Davies BS, Bensadoun A, Fong LG, Young SG: GPIHBP1, a GPI-anchored protein required for the lipolytic processing of triglyceride-rich lipoproteins. J Lipid Res 2009,50(Suppl):S57-62.
    • (2009) J Lipid Res , vol.50 , Issue.SUPPL , pp. S57-62
    • Beigneux, A.P.1    Davies, B.S.2    Bensadoun, A.3    Fong, L.G.4    Young, S.G.5
  • 36
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R: Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 2010,26(5):589-595. 10.1093/bioinformatics/btp698.
    • (2010) Bioinformatics , vol.26 , Issue.5 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 38
    • 59649090821 scopus 로고    scopus 로고
    • SNP genotyping using the Sequenom MassARRAY iPLEX platform
    • Gabriel S, Ziaugra L, Tabbaa D: SNP genotyping using the Sequenom MassARRAY iPLEX platform. Curr Protoc Hum Genet 2009,Chapter 2(Unit 2):12.
    • (2009) Curr Protoc Hum Genet , vol.2 , Issue.2 , pp. 12
    • Gabriel, S.1    Ziaugra, L.2    Tabbaa, D.3
  • 39
    • 62649155943 scopus 로고    scopus 로고
    • A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals
    • Browning BL, Browning SR: A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet 2009,84(2):210-223. 10.1016/j.ajhg.2009.01.005.
    • (2009) Am J Hum Genet , vol.84 , Issue.2 , pp. 210-223
    • Browning, B.L.1    Browning, S.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.