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Volumn 546, Issue C, 2014, Pages 415-439

Cas9-based genome editing in drosophila

Author keywords

CRISPR; Drosophila; Genome editing; Genome engineering; Homologous recombination; Methods High resolution melt assays

Indexed keywords

CRISPR ASSOCIATED PROTEIN; GENOMIC DNA; PROTEIN CAS9; RNA; SINGLE STRANDED DNA; UNCLASSIFIED DRUG; GUIDE RNA;

EID: 84925382560     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/B978-0-12-801185-0.00019-2     Document Type: Chapter
Times cited : (31)

References (44)
  • 1
    • 84891722219 scopus 로고    scopus 로고
    • Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair
    • T.O. Auer, K. Duroure, A. De Cian, J.P. Concordet, and F. Del Bene Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair Genome Research 24 1 2014 142 153 10.1101/gr.161638.113
    • (2014) Genome Research , vol.24 , Issue.1 , pp. 142-153
    • Auer, T.O.1    Duroure, K.2    De Cian, A.3    Concordet, J.P.4    Del Bene, F.5
  • 2
    • 84893709652 scopus 로고    scopus 로고
    • CRISPR/Cas9 and genome editing in Drosophila
    • A.R. Bassett, and J.L. Liu CRISPR/Cas9 and genome editing in Drosophila Journal of Genetics and Genomics 41 1 2014 7 19 10.1016/j.jgg.2013.12.004
    • (2014) Journal of Genetics and Genomics , vol.41 , Issue.1 , pp. 7-19
    • Bassett, A.R.1    Liu, J.L.2
  • 3
    • 84892437994 scopus 로고    scopus 로고
    • Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system
    • A.R. Bassett, C. Tibbit, C.P. Ponting, and J.L. Liu Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system Cell Reports 4 1 2013 220 228 10.1016/j.celrep.2013.06.020
    • (2013) Cell Reports , vol.4 , Issue.1 , pp. 220-228
    • Bassett, A.R.1    Tibbit, C.2    Ponting, C.P.3    Liu, J.L.4
  • 4
    • 84893695645 scopus 로고    scopus 로고
    • Mutagenesis and homologous recombination in Drosophila cell lines using CRISPR/Cas9
    • A.R. Bassett, C. Tibbit, C.P. Ponting, and J.L. Liu Mutagenesis and homologous recombination in Drosophila cell lines using CRISPR/Cas9 Biology Open 3 1 2014 42 49 10.1242/bio.20137120
    • (2014) Biology Open , vol.3 , Issue.1 , pp. 42-49
    • Bassett, A.R.1    Tibbit, C.2    Ponting, C.P.3    Liu, J.L.4
  • 5
    • 33646182222 scopus 로고    scopus 로고
    • Efficient gene targeting in Drosophila with zinc-finger nucleases
    • K. Beumer, G. Bhattacharyya, M. Bibikova, J.K. Trautman, and D. Carroll Efficient gene targeting in Drosophila with zinc-finger nucleases Genetics 172 4 2006 2391 2403 10.1534/genetics.105.052829
    • (2006) Genetics , vol.172 , Issue.4 , pp. 2391-2403
    • Beumer, K.1    Bhattacharyya, G.2    Bibikova, M.3    Trautman, J.K.4    Carroll, D.5
  • 6
    • 84901851177 scopus 로고    scopus 로고
    • Targeted genome engineering techniques in Drosophila
    • K.J. Beumer, and D. Carroll Targeted genome engineering techniques in Drosophila Methods 68 1 2014 29 37 10.1016/j.ymeth.2013.12.002
    • (2014) Methods , vol.68 , Issue.1 , pp. 29-37
    • Beumer, K.J.1    Carroll, D.2
  • 8
    • 84885791114 scopus 로고    scopus 로고
    • Comparing zinc finger nucleases and transcription activator-like effector nucleases for gene targeting in Drosophila
    • K.J. Beumer, J.K. Trautman, M. Christian, T.J. Dahlem, C.M. Lake, and R.S. Hawley Comparing zinc finger nucleases and transcription activator-like effector nucleases for gene targeting in Drosophila G3 3 10 2013 1717 1725 10.1534/g3.113.007260
    • (2013) G3 , vol.3 , Issue.10 , pp. 1717-1725
    • Beumer, K.J.1    Trautman, J.K.2    Christian, M.3    Dahlem, T.J.4    Lake, C.M.5    Hawley, R.S.6
  • 9
    • 84881060423 scopus 로고    scopus 로고
    • Donor DNA utilization during gene targeting with zinc-finger nucleases
    • K.J. Beumer, J.K. Trautman, K. Mukherjee, and D. Carroll Donor DNA utilization during gene targeting with zinc-finger nucleases G3 3 4 2013 657 664 10.1534/g3.112.005439
    • (2013) G3 , vol.3 , Issue.4 , pp. 657-664
    • Beumer, K.J.1    Trautman, J.K.2    Mukherjee, K.3    Carroll, D.4
  • 10
    • 0036021389 scopus 로고    scopus 로고
    • Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases
    • M. Bibikova, M. Golic, K.G. Golic, and D. Carroll Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases Genetics 161 3 2002 1169 1175
    • (2002) Genetics , vol.161 , Issue.3 , pp. 1169-1175
    • Bibikova, M.1    Golic, M.2    Golic, K.G.3    Carroll, D.4
  • 11
    • 84903130266 scopus 로고    scopus 로고
    • Efficient chromosomal gene modification with CRISPR/cas9 and PCR-based homologous recombination donors in cultured Drosophila cells
    • R. Bottcher, M. Hollmann, K. Merk, V. Nitschko, C. Obermaier, and J. Philippou-Massier Efficient chromosomal gene modification with CRISPR/cas9 and PCR-based homologous recombination donors in cultured Drosophila cells Nucleic Acids Research 42 11 2014 e89 10.1093/nar/gku289
    • (2014) Nucleic Acids Research , vol.42 , Issue.11 , pp. e89
    • Bottcher, R.1    Hollmann, M.2    Merk, K.3    Nitschko, V.4    Obermaier, C.5    Philippou-Massier, J.6
  • 12
    • 70349313064 scopus 로고    scopus 로고
    • Genetic analysis of zinc-finger nuclease-induced gene targeting in Drosophila
    • A. Bozas, K.J. Beumer, J.K. Trautman, and D. Carroll Genetic analysis of zinc-finger nuclease-induced gene targeting in Drosophila Genetics 182 3 2009 641 651 10.1534/genetics.109.101329
    • (2009) Genetics , vol.182 , Issue.3 , pp. 641-651
    • Bozas, A.1    Beumer, K.J.2    Trautman, J.K.3    Carroll, D.4
  • 13
    • 67650483653 scopus 로고    scopus 로고
    • Non-lethal PCR genotyping of single Drosophila
    • G.B. Carvalho, W.W. Ja, and S. Benzer Non-lethal PCR genotyping of single Drosophila BioTechniques 46 4 2009 312 314 10.2144/000113088
    • (2009) BioTechniques , vol.46 , Issue.4 , pp. 312-314
    • Carvalho, G.B.1    Ja, W.W.2    Benzer, S.3
  • 14
    • 84865364870 scopus 로고    scopus 로고
    • Playing the end game: DNA double-strand break repair pathway choice
    • J.R. Chapman, M.R. Taylor, and S.J. Boulton Playing the end game: DNA double-strand break repair pathway choice Molecular Cell 47 4 2012 497 510 10.1016/j.molcel.2012.07.029
    • (2012) Molecular Cell , vol.47 , Issue.4 , pp. 497-510
    • Chapman, J.R.1    Taylor, M.R.2    Boulton, S.J.3
  • 15
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • L. Cong, F.A. Ran, D. Cox, S. Lin, R. Barretto, and N. Habib Multiplex genome engineering using CRISPR/Cas systems Science 339 6121 2013 819 823 10.1126/science.1231143
    • (2013) Science , vol.339 , Issue.6121 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3    Lin, S.4    Barretto, R.5    Habib, N.6
  • 16
    • 84884904381 scopus 로고    scopus 로고
    • Engineering the Caenorhabditis elegans genome using Cas9-triggered homologous recombination
    • D.J. Dickinson, J.D. Ward, D.J. Reiner, and B. Goldstein Engineering the Caenorhabditis elegans genome using Cas9-triggered homologous recombination Nature Methods 10 10 2013 1028 1034 10.1038/nmeth.2641
    • (2013) Nature Methods , vol.10 , Issue.10 , pp. 1028-1034
    • Dickinson, D.J.1    Ward, J.D.2    Reiner, D.J.3    Goldstein, B.4
  • 17
    • 56649114274 scopus 로고    scopus 로고
    • A one pot, one step, precision cloning method with high throughput capability
    • C. Engler, R. Kandzia, and S. Marillonnet A one pot, one step, precision cloning method with high throughput capability PLoS One 3 11 2008 e3647 10.1371/journal.pone.0003647
    • (2008) PLoS One , vol.3 , Issue.11 , pp. e3647
    • Engler, C.1    Kandzia, R.2    Marillonnet, S.3
  • 19
    • 84880570576 scopus 로고    scopus 로고
    • High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
    • Y. Fu, J.A. Foden, C. Khayter, M.L. Maeder, D. Reyon, and J.K. Joung High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells Nature Biotechnology 31 9 2013 822 826 10.1038/nbt.2623
    • (2013) Nature Biotechnology , vol.31 , Issue.9 , pp. 822-826
    • Fu, Y.1    Foden, J.A.2    Khayter, C.3    Maeder, M.L.4    Reyon, D.5    Joung, J.K.6
  • 21
    • 84880088705 scopus 로고    scopus 로고
    • Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease
    • S.J. Gratz, A.M. Cummings, J.N. Nguyen, D.C. Hamm, L.K. Donohue, and M.M. Harrison Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease Genetics 194 4 2013 1029 1035 10.1534/genetics.113.152710
    • (2013) Genetics , vol.194 , Issue.4 , pp. 1029-1035
    • Gratz, S.J.1    Cummings, A.M.2    Nguyen, J.N.3    Hamm, D.C.4    Donohue, L.K.5    Harrison, M.M.6
  • 22
    • 84900458436 scopus 로고    scopus 로고
    • Highly specific and efficient CRISPR/Cas9-catalyzed homology-directed repair in Drosophila
    • S.J. Gratz, F.P. Ukken, C.D. Rubinstein, G. Thiede, L.K. Donohue, and A.M. Cummings Highly specific and efficient CRISPR/Cas9-catalyzed homology-directed repair in Drosophila Genetics 196 4 2014 961 971 10.1534/genetics.113.160713
    • (2014) Genetics , vol.196 , Issue.4 , pp. 961-971
    • Gratz, S.J.1    Ukken, F.P.2    Rubinstein, C.D.3    Thiede, G.4    Donohue, L.K.5    Cummings, A.M.6
  • 23
    • 84887478758 scopus 로고    scopus 로고
    • CRISPR/Cas9-mediated genome engineering and the promise of designer flies on demand
    • S.J. Gratz, J. Wildonger, M.M. Harrison, and K.M. O'Connor-Giles CRISPR/Cas9-mediated genome engineering and the promise of designer flies on demand Fly 7 4 2013 249 255 10.4161/fly.26566
    • (2013) Fly , vol.7 , Issue.4 , pp. 249-255
    • Gratz, S.J.1    Wildonger, J.2    Harrison, M.M.3    O'Connor-Giles, K.M.4
  • 24
    • 84893287073 scopus 로고    scopus 로고
    • E-CRISP: Fast CRISPR target site identification
    • F. Heigwer, G. Kerr, and M. Boutros E-CRISP: Fast CRISPR target site identification Nature Methods 11 2 2014 122 123 10.1038/nmeth.2812
    • (2014) Nature Methods , vol.11 , Issue.2 , pp. 122-123
    • Heigwer, F.1    Kerr, G.2    Boutros, M.3
  • 27
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • W. Jiang, D. Bikard, D. Cox, F. Zhang, and L.A. Marraffini RNA-guided editing of bacterial genomes using CRISPR-Cas systems Nature Biotechnology 31 3 2013 233 239 10.1038/nbt.2508
    • (2013) Nature Biotechnology , vol.31 , Issue.3 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 28
    • 84900448210 scopus 로고    scopus 로고
    • New horizons in genome engineering of Drosophila melanogaster
    • S. Kondo New horizons in genome engineering of Drosophila melanogaster Genes & Genetic Systems 89 1 2014 3 8
    • (2014) Genes & Genetic Systems , vol.89 , Issue.1 , pp. 3-8
    • Kondo, S.1
  • 29
    • 84884925278 scopus 로고    scopus 로고
    • Highly improved gene targeting by germline-specific Cas9 expression in Drosophila
    • S. Kondo, and R. Ueda Highly improved gene targeting by germline-specific Cas9 expression in Drosophila Genetics 195 3 2013 715 721 10.1534/genetics.113.156737
    • (2013) Genetics , vol.195 , Issue.3 , pp. 715-721
    • Kondo, S.1    Ueda, R.2
  • 30
    • 84904572233 scopus 로고    scopus 로고
    • RNA-guided genome editing in drosophila with the purified cas9 protein
    • J.S. Lee, S.J. Kwak, J. Kim, H.M. Noh, J.S. Kim, and K. Yu RNA-guided genome editing in drosophila with the purified cas9 protein G3 4 7 2014 1291 1295 10.1534/g3.114.012179
    • (2014) G3 , vol.4 , Issue.7 , pp. 1291-1295
    • Lee, J.S.1    Kwak, S.J.2    Kim, J.3    Noh, H.M.4    Kim, J.S.5    Yu, K.6
  • 31
    • 84886513724 scopus 로고    scopus 로고
    • A guide RNA sequence design platform for the CRISPR/Cas9 system for model organism genomes
    • M. Ma, A.Y. Ye, W. Zheng, and L. Kong A guide RNA sequence design platform for the CRISPR/Cas9 system for model organism genomes BioMed Research International 2013 2013 270805 10.1155/2013/270805
    • (2013) BioMed Research International , vol.2013 , pp. 270805
    • Ma, M.1    Ye, A.Y.2    Zheng, W.3    Kong, L.4
  • 32
    • 84884160273 scopus 로고    scopus 로고
    • CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • P. Mali, J. Aach, P.B. Stranges, K.M. Esvelt, M. Moosburner, and S. Kosuri CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering Nature Biotechnology 31 9 2013 833 838 10.1038/nbt.2675
    • (2013) Nature Biotechnology , vol.31 , Issue.9 , pp. 833-838
    • Mali, P.1    Aach, J.2    Stranges, P.B.3    Esvelt, K.M.4    Moosburner, M.5    Kosuri, S.6
  • 33
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • P. Mali, L. Yang, K.M. Esvelt, J. Aach, M. Guell, and J.E. DiCarlo RNA-guided human genome engineering via Cas9 Science 339 6121 2013 823 826 10.1126/science.1232033
    • (2013) Science , vol.339 , Issue.6121 , pp. 823-826
    • Mali, P.1    Yang, L.2    Esvelt, K.M.3    Aach, J.4    Guell, M.5    Dicarlo, J.E.6
  • 34
    • 84901364818 scopus 로고    scopus 로고
    • Resources for functional genomics studies in Drosophila melanogaster
    • S.E. Mohr, Y. Hu, K. Kim, B.E. Housden, and N. Perrimon Resources for functional genomics studies in Drosophila melanogaster Genetics 197 1 2014 1 18 10.1534/genetics.113.154344
    • (2014) Genetics , vol.197 , Issue.1 , pp. 1-18
    • Mohr, S.E.1    Hu, Y.2    Kim, K.3    Housden, B.E.4    Perrimon, N.5
  • 35
    • 84884155038 scopus 로고    scopus 로고
    • High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity
    • V. Pattanayak, S. Lin, J.P. Guilinger, E. Ma, J.A. Doudna, and D.R. Liu High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity Nature Biotechnology 31 9 2013 839 843 10.1038/nbt.2673
    • (2013) Nature Biotechnology , vol.31 , Issue.9 , pp. 839-843
    • Pattanayak, V.1    Lin, S.2    Guilinger, J.P.3    Ma, E.4    Doudna, J.A.5    Liu, D.R.6
  • 38
    • 84888372954 scopus 로고    scopus 로고
    • A simplified and efficient germline-specific CRISPR/Cas9 system for Drosophila genomic engineering
    • Z.L. Sebo, H.B. Lee, Y. Peng, and Y. Guo A simplified and efficient germline-specific CRISPR/Cas9 system for Drosophila genomic engineering Fly 8 1 2014 52 57 10.4161/fly.26828
    • (2014) Fly , vol.8 , Issue.1 , pp. 52-57
    • Sebo, Z.L.1    Lee, H.B.2    Peng, Y.3    Guo, Y.4
  • 39
    • 18944373328 scopus 로고    scopus 로고
    • Highly efficient endogenous human gene correction using designed zinc-finger nucleases
    • F.D. Urnov, J.C. Miller, Y.L. Lee, C.M. Beausejour, J.M. Rock, and S. Augustus Highly efficient endogenous human gene correction using designed zinc-finger nucleases Nature 435 7042 2005 646 651 10.1038/nature03556
    • (2005) Nature , vol.435 , Issue.7042 , pp. 646-651
    • Urnov, F.D.1    Miller, J.C.2    Lee, Y.L.3    Beausejour, C.M.4    Rock, J.M.5    Augustus, S.6
  • 40
    • 84877707375 scopus 로고    scopus 로고
    • One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
    • H. Wang, H. Yang, C.S. Shivalila, M.M. Dawlaty, A.W. Cheng, and F. Zhang One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering Cell 153 4 2013 910 918 10.1016/j.cell.2013.04.025
    • (2013) Cell , vol.153 , Issue.4 , pp. 910-918
    • Wang, H.1    Yang, H.2    Shivalila, C.S.3    Dawlaty, M.M.4    Cheng, A.W.5    Zhang, F.6
  • 41
    • 84901336231 scopus 로고    scopus 로고
    • Efficient gene knock-out and knock-in with transgenic Cas9 in Drosophila
    • Z. Xue, M. Ren, M. Wu, J. Dai, Y.S. Rong, and G. Gao Efficient gene knock-out and knock-in with transgenic Cas9 in Drosophila G3 4 5 2014 925 929 10.1534/g3.114.010496
    • (2014) G3 , vol.4 , Issue.5 , pp. 925-929
    • Xue, Z.1    Ren, M.2    Wu, M.3    Dai, J.4    Rong, Y.S.5    Gao, G.6
  • 43
    • 84978984440 scopus 로고    scopus 로고
    • Various applications of TALEN- and CRISPR/Cas9-mediated homologous recombination to modify the Drosophila genome
    • Z. Yu, H. Chen, J. Liu, H. Zhang, Y. Yan, and N. Zhu Various applications of TALEN- and CRISPR/Cas9-mediated homologous recombination to modify the Drosophila genome Biology Open 3 4 2014 271 280 10.1242/bio.20147682
    • (2014) Biology Open , vol.3 , Issue.4 , pp. 271-280
    • Yu, Z.1    Chen, H.2    Liu, J.3    Zhang, H.4    Yan, Y.5    Zhu, N.6
  • 44
    • 84883809403 scopus 로고    scopus 로고
    • Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila
    • Z. Yu, M. Ren, Z. Wang, B. Zhang, Y.S. Rong, and R. Jiao Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila Genetics 195 1 2013 289 291 10.1534/genetics.113.153825
    • (2013) Genetics , vol.195 , Issue.1 , pp. 289-291
    • Yu, Z.1    Ren, M.2    Wang, Z.3    Zhang, B.4    Rong, Y.S.5    Jiao, R.6


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