-
1
-
-
58449134534
-
Small silencing RNAs: An expanding universe
-
Ghildiyal, M. and Zamore, P.D. (2009) Small silencing RNAs: An expanding universe. Nat. Rev. Genet., 10, 94-108.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
2
-
-
20644462362
-
Micros for microbes: Non-coding regulatory RNAs in bacteria
-
Gottesman, S. (2005) Micros for microbes: Non-coding regulatory RNAs in bacteria. Trends Genet., 21, 399-404.
-
(2005)
Trends Genet.
, vol.21
, pp. 399-404
-
-
Gottesman, S.1
-
3
-
-
60149089144
-
Regulatory RNAs in bacteria
-
Waters, L.S. and Storz, G. (2009) Regulatory RNAs in bacteria. Cell, 136, 615-628.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
4
-
-
34247158257
-
Mechanism of RNA silencing by Hfq-binding small RNAs
-
Aiba, H. (2007) Mechanism of RNA silencing by Hfq-binding small RNAs. Curr. Opin. Microbiol., 10, 134-139.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 134-139
-
-
Aiba, H.1
-
5
-
-
0036645490
-
Spot 42 RNA mediates discoordinate expression of the E. Coli galactose operon
-
Møller, T., Franch, T., Udesen, C., Gerdes, K. and Valentin-Hansen, P. (2002) Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon. Genes Dev., 16, 1696-1706.
-
(2002)
Genes Dev.
, vol.16
, pp. 1696-1706
-
-
Møller, T.1
Franch, T.2
Udesen, C.3
Gerdes, K.4
Valentin-Hansen, P.5
-
6
-
-
0032531720
-
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding
-
Altuvia, S., Zhang, A., Argaman, L., Tiwari, A. and Storz, G. (1998) The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding. EMBO J., 17, 6069-6075.
-
(1998)
EMBO J.
, vol.17
, pp. 6069-6075
-
-
Altuvia, S.1
Zhang, A.2
Argaman, L.3
Tiwari, A.4
Storz, G.5
-
7
-
-
1542320707
-
Hfq, a new chaperoning role: Binding to messenger RNA determines access for small RNA regulator
-
Geissmann, T.A. and Touati, D. (2004) Hfq, a new chaperoning role: Binding to messenger RNA determines access for small RNA regulator. EMBO J., 23, 396-405.
-
(2004)
EMBO J.
, vol.23
, pp. 396-405
-
-
Geissmann, T.A.1
Touati, D.2
-
8
-
-
4944236203
-
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli
-
Chen, S., Zhang, A., Blyn, L.B. and Storz, G. (2004) MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli. J. Bacteriol., 186, 6689-6697.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6689-6697
-
-
Chen, S.1
Zhang, A.2
Blyn, L.B.3
Storz, G.4
-
9
-
-
28244471582
-
Regulation of ompA mRNA stability: The role of a small regulatory RNA in growth phase-dependent control
-
Rasmussen, A.A., Eriksen, M., Gilany, K., Udesen, C., Franch, T., Petersen, C. and Valentin-Hansen, P. (2005) Regulation of ompA mRNA stability: The role of a small regulatory RNA in growth phase-dependent control. Mol. Microbiol., 58, 1421-1429.
-
(2005)
Mol. Microbiol.
, vol.58
, pp. 1421-1429
-
-
Rasmussen, A.A.1
Eriksen, M.2
Gilany, K.3
Udesen, C.4
Franch, T.5
Petersen, C.6
Valentin-Hansen, P.7
-
10
-
-
25844458478
-
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA
-
Udekwu, K.I., Darfeuille, F., Vogel, J., Reimegard, J., Holmqvist, E. and Wagner, E.G.H. (2005) Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev., 19, 2355-2366.
-
(2005)
Genes Dev.
, vol.19
, pp. 2355-2366
-
-
Udekwu, K.I.1
Darfeuille, F.2
Vogel, J.3
Reimegard, J.4
Holmqvist, E.5
Wagner, E.G.H.6
-
11
-
-
0031305303
-
Antisense micF RNA and 5-UTR of the target ompF RNA: Phylogenetic conservation of primary and secondary structures
-
Delihas, N. (1997) Antisense micF RNA and 5-UTR of the target ompF RNA: Phylogenetic conservation of primary and secondary structures. Nucleic Acids Symp. Ser., 26, 33-35.
-
(1997)
Nucleic Acids Symp. Ser.
, vol.26
, pp. 33-35
-
-
Delihas, N.1
-
12
-
-
33847206046
-
Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding
-
Vecerek, B., Moll, I. and Blasi, U. (2007) Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding. EMBO J., 26, 965-975.
-
(2007)
EMBO J.
, vol.26
, pp. 965-975
-
-
Vecerek, B.1
Moll, I.2
Blasi, U.3
-
13
-
-
67349095027
-
Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
-
Desnoyers, G., Morissette, A., Prévost, K. and Massé, E. (2009) Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA. EMBO J., 28, 1551-1561.
-
(2009)
EMBO J.
, vol.28
, pp. 1551-1561
-
-
Desnoyers, G.1
Morissette, A.2
Prévost, K.3
Massé, E.4
-
14
-
-
34247567492
-
An antisense RNA inhibits translation by competing with standby ribosomes
-
Darfeuille, F., Unoson, C., Vogel, J. and Wagner, E.G. (2007) An antisense RNA inhibits translation by competing with standby ribosomes. Mol. Cell, 26, 381-392.
-
(2007)
Mol. Cell
, vol.26
, pp. 381-392
-
-
Darfeuille, F.1
Unoson, C.2
Vogel, J.3
Wagner, E.G.4
-
15
-
-
57149111586
-
Small RNA binding to 5' mRNA coding region inhibits translational initiation
-
Bouvier, M., Sharma, C.M., Mika, F., Nierhaus, K.H. and Vogel, J. (2008) Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol. Cell, 32, 827-837.
-
(2008)
Mol. Cell
, vol.32
, pp. 827-837
-
-
Bouvier, M.1
Sharma, C.M.2
Mika, F.3
Nierhaus, K.H.4
Vogel, J.5
-
16
-
-
35948970194
-
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites
-
Sharma, C.M., Darfeuille, F., Plantinga, T.H. and Vogel, J. (2007) A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev., 21, 2804-2817.
-
(2007)
Genes Dev.
, vol.21
, pp. 2804-2817
-
-
Sharma, C.M.1
Darfeuille, F.2
Plantinga, T.H.3
Vogel, J.4
-
17
-
-
68249156618
-
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
-
Pfeiffer, V., Papenfort, K., Lucchini, S., Hinton, J.C.D. and Vogel, J. (2009) Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat. Struct. Mol. Biol., 16, 840-846.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 840-846
-
-
Pfeiffer, V.1
Papenfort, K.2
Lucchini, S.3
Hinton, J.C.D.4
Vogel, J.5
-
18
-
-
4944264194
-
GadY, a small-RNA regulator of acid response genes in Escherichia coli
-
Opdyke, J.A., Kang, J.-G. and Storz, G. (2004) GadY, a small-RNA regulator of acid response genes in Escherichia coli. J. Bacteriol., 186, 6698-6705.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6698-6705
-
-
Opdyke, J.A.1
Kang, J.-G.2
Storz, G.3
-
19
-
-
0000640710
-
Modulation of chemical composition and other parameters of the cell by growth rate
-
In: Neidhardt, FC, Curtiss, III R, Ingraham, JL, Lin, ECC, Low, KB, Magasanik, B, Reznikoff, WS, Riley, M, Schaechter, M and Umbarger, HE (eds)., 2nd edn., ASM Press, Washington, DC
-
Bremer, H. and Dennis, P. (1996) Modulation of chemical composition and other parameters of the cell by growth rate. In: Neidhardt, FC, Curtiss, III R, Ingraham, JL, Lin, ECC, Low, KB, Magasanik, B, Reznikoff, WS, Riley, M, Schaechter, M and Umbarger, HE (eds). Escherichia coli and Salmonella: Cellular and molecular biology, 2nd edn., ASM Press, Washington, DC, pp. 1553-1569.
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 1553-1569
-
-
Bremer, H.1
Dennis, P.2
-
20
-
-
0016610995
-
Determinant of cistron specificity in bacterial ribosomes
-
Shine, J. and Dalgarno, L. (1975) Determinant of cistron specificity in bacterial ribosomes. Nature, 254, 34-38.
-
(1975)
Nature
, vol.254
, pp. 34-38
-
-
Shine, J.1
Dalgarno, L.2
-
22
-
-
27644482393
-
Lost in translation: The influence of ribosomes on bacterial mRNA decay
-
Deana, A. and Belasco, J.G. (2005) Lost in translation: The influence of ribosomes on bacterial mRNA decay. Genes Dev., 19, 2526-2533.
-
(2005)
Genes Dev.
, vol.19
, pp. 2526-2533
-
-
Deana, A.1
Belasco, J.G.2
-
23
-
-
78449310037
-
mRNA turnover rate limits siRNA and microRNA efficacy
-
Larsson, E., Sander, C. and Marks, D. (2010) mRNA turnover rate limits siRNA and microRNA efficacy. Mol. Syst. Biol., 6, 433.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 433
-
-
Larsson, E.1
Sander, C.2
Marks, D.3
-
25
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K.A. and Wanner, B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl Acad. Sci. U.S.A., 97, 6640-6645.
-
(2000)
Proc. Natl Acad. Sci. U.S.A.
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
26
-
-
0030861452
-
Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements
-
Lutz, R. and Bujard, H. (1997) Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements. Nucleic Acids Res., 25, 1203-1210.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1203-1210
-
-
Lutz, R.1
Bujard, H.2
-
27
-
-
34548668642
-
Quantitative characteristics of gene regulation by small RNA
-
Levine, E., Zhang, Z., Kuhlman, T. and Hwa, T. (2007) Quantitative characteristics of gene regulation by small RNA. PLoS Biol., 5, e229.
-
(2007)
PLoS Biol.
, vol.5
, pp. e229
-
-
Levine, E.1
Zhang, Z.2
Kuhlman, T.3
Hwa, T.4
-
28
-
-
30544433196
-
Engineering and characterization of a superfolder green fluorescent protein
-
Pédelacq, J.-D., Cabantous, S., Tran, T., Terwilliger, T.C. and Waldo, G.S. (2006) Engineering and characterization of a superfolder green fluorescent protein. Nat. Biotechnol., 24, 79-88.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 79-88
-
-
Pédelacq, J.-D.1
Cabantous, S.2
Tran, T.3
Terwilliger, T.C.4
Waldo, G.S.5
-
29
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis, H.M., Mirsky, E.A. and Voigt, C.A. (2009) Automated design of synthetic ribosome binding sites to control protein expression. Nat. Biotechnol., 27, 946-950.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
30
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker, I.L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
-
31
-
-
48449095385
-
The Vienna RNA websuite
-
Gruber, A.R., Lorenz, R., Bernhart, S.H., Neuböck, R. and Hofacker, I.L. (2008) The Vienna RNA websuite. Nucleic Acids Res., 36, W70-W74.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W70-W74
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neuböck, R.4
Hofacker, I.L.5
-
32
-
-
33646877072
-
Thermodynamics of RNA-RNA binding
-
Mückstein, U., Tafer, H., Hackermüller, J., Bernhart, S.H., Stadler, P.F. and Hofacker, I.L. (2006) Thermodynamics of RNA-RNA binding. Bioinformatics, 22, 1177-1182.
-
(2006)
Bioinformatics
, vol.22
, pp. 1177-1182
-
-
Mückstein, U.1
Tafer, H.2
Hackermüller, J.3
Bernhart, S.H.4
Stadler, P.F.5
Hofacker, I.L.6
-
33
-
-
33847386673
-
Translational control and target recognition by Escherichia coli small RNAs in vivo
-
Urban, J.H. and Vogel, J. (2007) Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res., 35, 1018-1037.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 1018-1037
-
-
Urban, J.H.1
Vogel, J.2
-
34
-
-
77953120292
-
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis
-
Holmqvist, E., Reimegård, J., Sterk, M., Grantcharova, N., Römling, U. and Wagner, E.G.H. (2010) Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis. EMBO J., 29, 1840-1850.
-
(2010)
EMBO J.
, vol.29
, pp. 1840-1850
-
-
Holmqvist, E.1
Reimegård, J.2
Sterk, M.3
Grantcharova, N.4
Römling, U.5
Wagner, E.G.H.6
-
35
-
-
4444272137
-
The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coli
-
Lease, R.A., Smith, D., McDonough, K. and Belfort, M. (2004) The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coli. J. Bacteriol., 186, 6179-6185.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6179-6185
-
-
Lease, R.A.1
Smith, D.2
McDonough, K.3
Belfort, M.4
-
36
-
-
58249086415
-
Chapter 1: Analysis of RNA Decay, Processing, and Polyadenylation inEscherichia coliand Other Prokaryotes
-
In: Maquat, LE and Arraiano, C (eds)., Academic Press, San Diego, CA
-
Mohanty, B.K., Hili, G., Maples, S.R. and Kushner, S.R. (2008) Chapter 1: Analysis of RNA Decay, Processing, and Polyadenylation inEscherichia coliand Other Prokaryotes. In: Maquat, LE and Arraiano, C (eds). RNA Turnover in Bacteria, Archaea and Organelles, Methods in Enzymology, Academic Press, San Diego, CA, 447, pp. 3-29.
-
(2008)
RNA Turnover in Bacteria, Archaea and Organelles, Methods in Enzymology
, vol.447
, pp. 3-29
-
-
Mohanty, B.K.1
Hili, G.2
Maples, S.R.3
Kushner, S.R.4
-
37
-
-
64149097786
-
The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
-
Bustin, S.A., Benes, V., Garson, J.A., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T., Pfaffl, M.W., Shipley, G.L. et al. (2009) The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments. Clin. Chem., 55, 611-622.
-
(2009)
Clin. Chem.
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
Hellemans, J.4
Huggett, J.5
Kubista, M.6
Mueller, R.7
Nolan, T.8
Pfaffl, M.W.9
Shipley, G.L.10
-
38
-
-
79151474604
-
Theoretical analysis of catalytic-sRNA-mediated gene silencing
-
Hao, Y., Xu, L. and Shi, H. (2011) Theoretical analysis of catalytic-sRNA-mediated gene silencing. J. Mol. Biol., 406, 195-204.
-
(2011)
J. Mol. Biol.
, vol.406
, pp. 195-204
-
-
Hao, Y.1
Xu, L.2
Shi, H.3
-
39
-
-
79751480724
-
Small RNA biology is systems biology
-
Jost, D., Nowojewski, A. and Levine, E. (2011) Small RNA biology is systems biology. BMB Rep., 44, 11-21.
-
(2011)
BMB Rep.
, vol.44
, pp. 11-21
-
-
Jost, D.1
Nowojewski, A.2
Levine, E.3
-
40
-
-
35248861103
-
Efficient degradation and expression prioritization with small RNAs
-
Mitarai, N., Andersson, A.M.C., Krishna, S., Semsey, S. and Sneppen, K. (2007) Efficient degradation and expression prioritization with small RNAs. Phys. Biol., 4, 164-171.
-
(2007)
Phys. Biol.
, vol.4
, pp. 164-171
-
-
Mitarai, N.1
Andersson, A.M.C.2
Krishna, S.3
Semsey, S.4
Sneppen, K.5
-
41
-
-
80052507991
-
Regulation by small RNAs via coupled degradation: Mean-field and variational approaches
-
Platini, T., Jia, T. and Kulkarni, R.V. (2011) Regulation by small RNAs via coupled degradation: Mean-field and variational approaches. Phys. Rev. E, 84, 021928.
-
(2011)
Phys. Rev. E
, vol.84
, pp. 021928
-
-
Platini, T.1
Jia, T.2
Kulkarni, R.V.3
-
42
-
-
34748871477
-
Regulation of gene expression by small non-coding RNAs: A quantitative view
-
Shimoni, Y., Friedlander, G., Hetzroni, G., Niv, G., Altuvia, S., Biham, O. and Margalit, H. (2007) Regulation of gene expression by small non-coding RNAs: A quantitative view. Mol. Syst. Biol., 3, 138.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 138
-
-
Shimoni, Y.1
Friedlander, G.2
Hetzroni, G.3
Niv, G.4
Altuvia, S.5
Biham, O.6
Margalit, H.7
-
43
-
-
26444505976
-
Effect of RyhB small RNA on global iron use in Escherichia coli
-
Massé, E., Vanderpool, C.K. and Gottesman, S. (2005) Effect of RyhB small RNA on global iron use in Escherichia coli. J. Bacteriol., 187, 6962-6971.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6962-6971
-
-
Massé, E.1
Vanderpool, C.K.2
Gottesman, S.3
-
44
-
-
0037007078
-
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
-
Masse, E. and Gottesman, S. (2002) A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc. Natl Acad. Sci. U.S.A., 99, 4620-4625.
-
(2002)
Proc. Natl Acad. Sci. U.S.A.
, vol.99
, pp. 4620-4625
-
-
Masse, E.1
Gottesman, S.2
-
45
-
-
0141860088
-
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
-
Massé, E., Escorcia, F.E. and Gottesman, S. (2003) Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev., 17, 2374-2383.
-
(2003)
Genes Dev.
, vol.17
, pp. 2374-2383
-
-
Massé, E.1
Escorcia, F.E.2
Gottesman, S.3
-
46
-
-
84877292750
-
Spanning high-dimensional expression space using ribosome-binding site combinatorics
-
Zelcbuch, L., Antonovsky, N., Bar-Even, A., Levin-Karp, A., Barenholz, U., Dayagi, M., Liebermeister, W., Flamholz, A., Noor, E., Amram, S. et al. (2013) Spanning high-dimensional expression space using ribosome-binding site combinatorics. Nucleic Acids Res., 41, e98.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e98
-
-
Zelcbuch, L.1
Antonovsky, N.2
Bar-Even, A.3
Levin-Karp, A.4
Barenholz, U.5
Dayagi, M.6
Liebermeister, W.7
Flamholz, A.8
Noor, E.9
Amram, S.10
-
47
-
-
0032514739
-
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
-
Majdalani, N., Cunning, C., Sledjeski, D., Elliott, T. and Gottesman, S. (1998) DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc. Natl Acad. Sci. U.S.A., 95, 12462-12467.
-
(1998)
Proc. Natl Acad. Sci. U.S.A.
, vol.95
, pp. 12462-12467
-
-
Majdalani, N.1
Cunning, C.2
Sledjeski, D.3
Elliott, T.4
Gottesman, S.5
-
48
-
-
77953120292
-
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis
-
Holmqvist, E., Reimegård, J., Sterk, M., Grantcharova, N., Römling, U. and Wagner, E.G.H. (2010) Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis. EMBO J., 29, 1840-1850.
-
(2010)
EMBO J.
, vol.29
, pp. 1840-1850
-
-
Holmqvist, E.1
Reimegård, J.2
Sterk, M.3
Grantcharova, N.4
Römling, U.5
Wagner, E.G.H.6
-
50
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz, M.B., Levine, A.J., Siggia, E.D. and Swain, P.S. (2002) Stochastic gene expression in a single cell. Science, 297, 1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
51
-
-
0842285841
-
Summing up the noise in gene networks
-
Paulsson, J. (2004) Summing up the noise in gene networks. Nature, 427, 415-418.
-
(2004)
Nature
, vol.427
, pp. 415-418
-
-
Paulsson, J.1
-
52
-
-
0242490781
-
Fast evaluation of fluctuations in biochemical networks with the linear noise approximation
-
Elf, J. and Ehrenberg, M. (2003) Fast evaluation of fluctuations in biochemical networks with the linear noise approximation. Genome Res., 13, 2475-2484.
-
(2003)
Genome Res.
, vol.13
, pp. 2475-2484
-
-
Elf, J.1
Ehrenberg, M.2
-
53
-
-
56949096652
-
Small RNAs establish gene expression thresholds
-
Levine, E. and Hwa, T. (2008) Small RNAs establish gene expression thresholds. Curr. Opin. Microbiol., 11, 574-579.
-
(2008)
Curr. Opin. Microbiol.
, vol.11
, pp. 574-579
-
-
Levine, E.1
Hwa, T.2
-
54
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
Ozbudak, E.M., Thattai, M., Kurtser, I., Grossman, A.D. and van Oudenaarden, A. (2002) Regulation of noise in the expression of a single gene. Nat. Genet., 31, 69-73.
-
(2002)
Nat. Genet.
, vol.31
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
Van Oudenaarden, A.5
-
55
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
Swain, P.S., Elowitz, M.B. and Siggia, E.D. (2002) Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc. Natl Acad. Sci. U.S.A., 99, 12795-12800.
-
(2002)
Proc. Natl Acad. Sci. U.S.A.
, vol.99
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
56
-
-
0038182523
-
Interactions of the non-coding RNA DsrA and RpoS mRNA with the 30 S ribosomal subunit
-
Worhunsky, D.J., Godek, K., Litsch, S. and Schlax, P.J. (2003) Interactions of the non-coding RNA DsrA and RpoS mRNA with the 30 S ribosomal subunit. J. Biol. Chem., 278, 15815-15824.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 15815-15824
-
-
Worhunsky, D.J.1
Godek, K.2
Litsch, S.3
Schlax, P.J.4
-
57
-
-
33746926299
-
Interactions of ribosomal protein S1 with DsrA and rpoS mRNA
-
Koleva, R.I., Austin, C.A., Kowaleski, J.M., Neems, D.S., Wang, L., Vary, C.P.H. and Schlax, P.J. (2006) Interactions of ribosomal protein S1 with DsrA and rpoS mRNA. Biochem. Biophys. Res. Commun., 348, 662-668.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.348
, pp. 662-668
-
-
Koleva, R.I.1
Austin, C.A.2
Kowaleski, J.M.3
Neems, D.S.4
Wang, L.5
Vary, C.P.H.6
Schlax, P.J.7
-
58
-
-
0017683069
-
Host factor for coliphage Q- RNA replication: Presence in procaryotes and association with the 30S ribosomal subunit in Escherichia coli
-
DuBow, M.S., Ryan, T., Young, R.A. and Blumenthal, T. (1977) Host factor for coliphage Q- RNA replication: Presence in procaryotes and association with the 30S ribosomal subunit in Escherichia coli. Mol. Gen. Genet., 153, 39-43.
-
(1977)
Mol. Gen. Genet.
, vol.153
, pp. 39-43
-
-
DuBow, M.S.1
Ryan, T.2
Young, R.A.3
Blumenthal, T.4
-
59
-
-
0016821632
-
The host factor required for RNA phage Qbeta RNA replication in vitro. Intracellular location, quantitation, and purification by polyadenylate-cellulose chromatography
-
Carmichael, G.G., Weber, K., Niveleau, A. and Wahba, A.J. (1975) The host factor required for RNA phage Qbeta RNA replication in vitro. Intracellular location, quantitation, and purification by polyadenylate-cellulose chromatography. J. Biol. Chem., 250, 3607-3612.
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 3607-3612
-
-
Carmichael, G.G.1
Weber, K.2
Niveleau, A.3
Wahba, A.J.4
-
60
-
-
0037709369
-
Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq
-
Sukhodolets, M.V. and Garges, S. (2003) Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq. Biochemistry, 42, 8022-8034.
-
(2003)
Biochemistry
, vol.42
, pp. 8022-8034
-
-
Sukhodolets, M.V.1
Garges, S.2
-
61
-
-
34247109118
-
Hfq structure, function and ligand binding
-
Brennan, R.G. and Link, T.M. (2007) Hfq structure, function and ligand binding. Curr. Opin. Microbiol., 10, 125-133.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 125-133
-
-
Brennan, R.G.1
Link, T.M.2
-
62
-
-
84925283037
-
Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity
-
Peterman, N., Lavi-Itzkovitz, A. and Levine, E. (2014) Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity. Nucleic Acids Res., doi: 10.1093/nar/gku863.
-
(2014)
Nucleic Acids Res
-
-
Peterman, N.1
Lavi-Itzkovitz, A.2
Levine, E.3
-
63
-
-
0032514643
-
Riboregulation in Escherichia coli: DsrA RNA acts by RNA: RNA interactions at multiple loci
-
Lease, R.A., Cusick, M.E. and Belfort, M. (1998) Riboregulation in Escherichia coli: DsrA RNA acts by RNA: RNA interactions at multiple loci. Proc. Natl Acad. Sci. U.S.A., 95, 12456-12461.
-
(1998)
Proc. Natl Acad. Sci. U.S.A.
, vol.95
, pp. 12456-12461
-
-
Lease, R.A.1
Cusick, M.E.2
Belfort, M.3
-
64
-
-
0034730125
-
A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures
-
Lease, R.A. and Belfort, M. (2000) A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures. Proc. Natl Acad. Sci. U.S.A., 97, 9919-9924.
-
(2000)
Proc. Natl Acad. Sci. U.S.A.
, vol.97
, pp. 9919-9924
-
-
Lease, R.A.1
Belfort, M.2
-
65
-
-
33645508496
-
Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction
-
Morita, T., Mochizuki, Y. and Aiba, H. (2006) Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction. Proc. Natl Acad. Sci. U.S.A., 103, 4858-4863.
-
(2006)
Proc. Natl Acad. Sci. U.S.A.
, vol.103
, pp. 4858-4863
-
-
Morita, T.1
Mochizuki, Y.2
Aiba, H.3
-
66
-
-
54049118804
-
A quantitative comparison of sRNA-based and protein-based gene regulation
-
Mehta, P., Goyal, S. and Wingreen, N.S. (2008) A quantitative comparison of sRNA-based and protein-based gene regulation. Mol. Syst. Biol., 4, 221.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 221
-
-
Mehta, P.1
Goyal, S.2
Wingreen, N.S.3
-
67
-
-
84876365599
-
Regulating the many to benefit the few: Role of weak small RNA targets
-
Jost, D., Nowojewski, A. and Levine, E. (2013) Regulating the many to benefit the few: Role of weak small RNA targets. Biophys. J., 104, 1773-1782.
-
(2013)
Biophys. J.
, vol.104
, pp. 1773-1782
-
-
Jost, D.1
Nowojewski, A.2
Levine, E.3
-
68
-
-
33744800020
-
Target prediction for small, noncoding RNAs in bacteria
-
Tjaden, B., Goodwin, S.S., Opdyke, J.A., Guillier, M., Fu, D.X., Gottesman, S. and Storz, G. (2006) Target prediction for small, noncoding RNAs in bacteria. Nucleic Acids Res., 34, 2791-2802.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2791-2802
-
-
Tjaden, B.1
Goodwin, S.S.2
Opdyke, J.A.3
Guillier, M.4
Fu, D.X.5
Gottesman, S.6
Storz, G.7
|