-
1
-
-
20644462362
-
Micros for microbes: Non-coding regulatory RNAs in bacteria
-
S. Gottesman Micros for microbes: non-coding regulatory RNAs in bacteria Trends Genet. 21 2005 399 404
-
(2005)
Trends Genet.
, vol.21
, pp. 399-404
-
-
Gottesman, S.1
-
2
-
-
58449134534
-
Small silencing RNAs: An expanding universe
-
M. Ghildiyal, and P.D. Zamore Small silencing RNAs: an expanding universe Nat. Rev. Genet. 10 2009 94 108
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
4
-
-
49949116902
-
The impact of microRNAs on protein output
-
D. Baek, and J. Villén D.P. Bartel The impact of microRNAs on protein output Nature 455 2008 64 71
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villén, J.2
Bartel, D.P.3
-
5
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
M. Selbach, and B. Schwanhäusser N. Rajewsky Widespread changes in protein synthesis induced by microRNAs Nature 455 2008 58 63
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhäusser, B.2
Rajewsky, N.3
-
6
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
B.J. Reinhart, and F.J. Slack G. Ruvkun The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans Nature 403 2000 901 906
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Ruvkun, G.3
-
7
-
-
0033634943
-
The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor
-
F.J. Slack, and M. Basson G. Ruvkun The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor Mol. Cell 5 2000 659 669
-
(2000)
Mol. Cell
, vol.5
, pp. 659-669
-
-
Slack, F.J.1
Basson, M.2
Ruvkun, G.3
-
8
-
-
26444505976
-
Effect of RyhB small RNA on global iron use in Escherichia coli
-
E. Massé, C.K. Vanderpool, and S. Gottesman Effect of RyhB small RNA on global iron use in Escherichia coli J. Bacteriol. 187 2005 6962 6971
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6962-6971
-
-
Massé, E.1
Vanderpool, C.K.2
Gottesman, S.3
-
9
-
-
79954587098
-
MiR-124 regulates early neurogenesis in the optic vesicle and forebrain, targeting NeuroD1
-
K. Liu, and Y. Liu R. He MiR-124 regulates early neurogenesis in the optic vesicle and forebrain, targeting NeuroD1 Nucleic Acids Res. 39 2011 2869 2879
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2869-2879
-
-
Liu, K.1
Liu, Y.2
He, R.3
-
10
-
-
72749098126
-
Concomitant suppression of three target genes can explain the impact of a microRNA on metastasis
-
S. Valastyan, and N. Benaich R.A. Weinberg Concomitant suppression of three target genes can explain the impact of a microRNA on metastasis Genes Dev. 23 2009 2592 2597
-
(2009)
Genes Dev.
, vol.23
, pp. 2592-2597
-
-
Valastyan, S.1
Benaich, N.2
Weinberg, R.A.3
-
11
-
-
79959843370
-
MicroRNA-21 targets tumor suppressor genes ANP32A and SMARCA4
-
K. Schramedei, and N. Mörbt K. Brocke-Heidrich MicroRNA-21 targets tumor suppressor genes ANP32A and SMARCA4 Oncogene 30 2011 2975 2985
-
(2011)
Oncogene
, vol.30
, pp. 2975-2985
-
-
Schramedei, K.1
Mörbt, N.2
Brocke-Heidrich, K.3
-
12
-
-
71149108895
-
Conserved MicroRNA miR-8/miR-200 and its target USH/FOG2 control growth by regulating PI3K
-
S. Hyun, and J.H. Lee V.N. Kim Conserved MicroRNA miR-8/miR-200 and its target USH/FOG2 control growth by regulating PI3K Cell 139 2009 1096 1108
-
(2009)
Cell
, vol.139
, pp. 1096-1108
-
-
Hyun, S.1
Lee, J.H.2
Kim, V.N.3
-
13
-
-
77956547097
-
Loss of miR-200 inhibition of Suz12 leads to polycomb-mediated repression required for the formation and maintenance of cancer stem cells
-
D. Iliopoulos, and M. Lindahl-Allen K. Struhl Loss of miR-200 inhibition of Suz12 leads to polycomb-mediated repression required for the formation and maintenance of cancer stem cells Mol. Cell 39 2010 761 772
-
(2010)
Mol. Cell
, vol.39
, pp. 761-772
-
-
Iliopoulos, D.1
Lindahl-Allen, M.2
Struhl, K.3
-
14
-
-
76249119007
-
Opposing microRNA families regulate self-renewal in mouse embryonic stem cells
-
C. Melton, R.L. Judson, and R. Blelloch Opposing microRNA families regulate self-renewal in mouse embryonic stem cells Nature 463 2010 621 626
-
(2010)
Nature
, vol.463
, pp. 621-626
-
-
Melton, C.1
Judson, R.L.2
Blelloch, R.3
-
15
-
-
76649088031
-
MicroRNA let-7b regulates neural stem cell proliferation and differentiation by targeting nuclear receptor TLX signaling
-
C. Zhao, and G. Sun Y. Shi MicroRNA let-7b regulates neural stem cell proliferation and differentiation by targeting nuclear receptor TLX signaling Proc. Natl. Acad. Sci. USA 107 2010 1876 1881
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 1876-1881
-
-
Zhao, C.1
Sun, G.2
Shi, Y.3
-
16
-
-
77950518606
-
Genome-wide RNA-mediated interference screen identifies miR-19 targets in Notch-induced T-cell acute lymphoblastic leukemia
-
K.J. Mavrakis, and A.L. Wolfe H.G. Wendel Genome-wide RNA-mediated interference screen identifies miR-19 targets in Notch-induced T-cell acute lymphoblastic leukemia Nat. Cell Biol. 12 2010 372 379
-
(2010)
Nat. Cell Biol.
, vol.12
, pp. 372-379
-
-
Mavrakis, K.J.1
Wolfe, A.L.2
Wendel, H.G.3
-
17
-
-
54149095553
-
Biological principles of microRNA-mediated regulation: Shared themes amid diversity
-
A.S. Flynt, and E.C. Lai Biological principles of microRNA-mediated regulation: shared themes amid diversity Nat. Rev. Genet. 9 2008 831 842
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 831-842
-
-
Flynt, A.S.1
Lai, E.C.2
-
18
-
-
67349123973
-
Redefining microRNA targets
-
H. Seitz Redefining microRNA targets Curr. Biol. 19 2009 870 873
-
(2009)
Curr. Biol.
, vol.19
, pp. 870-873
-
-
Seitz, H.1
-
19
-
-
77954758552
-
Small RNAs: Pseudogenes act as microRNA decoys
-
M. Swami Small RNAs: pseudogenes act as microRNA decoys Nat. Rev. Genet. 11 2010 530 531
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 530-531
-
-
Swami, M.1
-
20
-
-
34548668642
-
Quantitative characteristics of gene regulation by small RNA
-
E. Levine, and Z. Zhang T. Hwa Quantitative characteristics of gene regulation by small RNA PLoS Biol. 5 2007 e229
-
(2007)
PLoS Biol.
, vol.5
, pp. 229
-
-
Levine, E.1
Zhang, Z.2
Hwa, T.3
-
21
-
-
33646591544
-
Transcriptional pulsing of a developmental gene
-
J.R. Chubb, and T. Trcek R.H. Singer Transcriptional pulsing of a developmental gene Curr. Biol. 16 2006 1018 1025
-
(2006)
Curr. Biol.
, vol.16
, pp. 1018-1025
-
-
Chubb, J.R.1
Trcek, T.2
Singer, R.H.3
-
22
-
-
79957608918
-
General properties of transcriptional time series in Escherichia coli
-
L.-H. So, and A. Ghosh I. Golding General properties of transcriptional time series in Escherichia coli Nat. Genet. 43 2011 554 560
-
(2011)
Nat. Genet.
, vol.43
, pp. 554-560
-
-
So, L.-H.1
Ghosh, A.2
Golding, I.3
-
23
-
-
0017664223
-
Physics of chemoreception
-
H.C. Berg, and E.M. Purcell Physics of chemoreception Biophys. J. 20 1977 193 219
-
(1977)
Biophys. J.
, vol.20
, pp. 193-219
-
-
Berg, H.C.1
Purcell, E.M.2
-
26
-
-
54049118804
-
A quantitative comparison of sRNA-based and protein-based gene regulation
-
P. Mehta, S. Goyal, and N.S. Wingreen A quantitative comparison of sRNA-based and protein-based gene regulation Mol. Syst. Biol. 4 2008 221
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 221
-
-
Mehta, P.1
Goyal, S.2
Wingreen, N.S.3
-
27
-
-
50449096238
-
Information flow and optimization in transcriptional regulation
-
G. Tkacik, C.G. Callan Jr., and W. Bialek Information flow and optimization in transcriptional regulation Proc. Natl. Acad. Sci. USA 105 2008 12265 12270
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 12265-12270
-
-
Tkacik, G.1
Callan, Jr.C.G.2
Bialek, W.3
-
29
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
D. Gillespie Exact stochastic simulation of coupled chemical reactions J. Phys. Chem. 81 1977 2340 2361
-
(1977)
J. Phys. Chem.
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.1
-
30
-
-
34748871477
-
Regulation of gene expression by small non-coding RNAs: A quantitative view
-
Y. Shimoni, and G. Friedlander H. Margalit Regulation of gene expression by small non-coding RNAs: a quantitative view Mol. Syst. Biol. 3 2007 138
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 138
-
-
Shimoni, Y.1
Friedlander, G.2
Margalit, H.3
-
31
-
-
0035049521
-
Genome-scale compositional comparisons in eukaryotes
-
A.J. Gentles, and S. Karlin Genome-scale compositional comparisons in eukaryotes Genome Res. 11 2001 540 546
-
(2001)
Genome Res.
, vol.11
, pp. 540-546
-
-
Gentles, A.J.1
Karlin, S.2
-
32
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
B.P. Lewis, C.B. Burge, and D.P. Bartel Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 120 2005 15 20
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
33
-
-
1942435249
-
Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
-
D.P. Bartel, and C.-Z. Chen Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs Nat. Rev. Genet. 5 2004 396 400
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 396-400
-
-
Bartel, D.P.1
Chen, C.-Z.2
-
34
-
-
35248861103
-
Efficient degradation and expression prioritization with small RNAs
-
N. Mitarai, and A.M.C. Andersson K. Sneppen Efficient degradation and expression prioritization with small RNAs Phys. Biol. 4 2007 164 171
-
(2007)
Phys. Biol.
, vol.4
, pp. 164-171
-
-
Mitarai, N.1
Andersson, A.M.C.2
Sneppen, K.3
-
36
-
-
67649784872
-
Dynamic features of gene expression control by small regulatory RNAs
-
N. Mitarai, and J.-A.M. Benjamin K. Sneppen Dynamic features of gene expression control by small regulatory RNAs Proc. Natl. Acad. Sci. USA 106 2009 10655 10659
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 10655-10659
-
-
Mitarai, N.1
Benjamin, J.-A.M.2
Sneppen, K.3
-
37
-
-
79751480724
-
Small RNA biology is systems biology
-
D. Jost, A. Nowojewski, and E. Levine Small RNA biology is systems biology BMB Rep 44 2011 11 21
-
(2011)
BMB Rep
, vol.44
, pp. 11-21
-
-
Jost, D.1
Nowojewski, A.2
Levine, E.3
-
38
-
-
80052266532
-
MicroRNAs can generate thresholds in target gene expression
-
S. Mukherji, and M.S. Ebert A. van Oudenaarden MicroRNAs can generate thresholds in target gene expression Nat. Genet. 43 2011 854 859
-
(2011)
Nat. Genet.
, vol.43
, pp. 854-859
-
-
Mukherji, S.1
Ebert, M.S.2
Van Oudenaarden, A.3
-
40
-
-
0037119587
-
Stochastic gene expression in a single cell
-
M.B. Elowitz, and A.J. Levine P.S. Swain Stochastic gene expression in a single cell Science 297 2002 1183 1186
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Swain, P.S.3
-
41
-
-
0842285841
-
Summing up the noise in gene networks
-
J. Paulsson Summing up the noise in gene networks Nature 427 2004 415 418
-
(2004)
Nature
, vol.427
, pp. 415-418
-
-
Paulsson, J.1
-
42
-
-
12244269687
-
Near-critical phenomena in intracellular metabolite pools
-
J. Elf, and J. Paulsson M. Ehrenberg Near-critical phenomena in intracellular metabolite pools Biophys. J. 84 2003 154 170
-
(2003)
Biophys. J.
, vol.84
, pp. 154-170
-
-
Elf, J.1
Paulsson, J.2
Ehrenberg, M.3
-
43
-
-
36949029208
-
Small regulatory RNAs may sharpen spatial expression patterns
-
E. Levine, P. McHale, and H. Levine Small regulatory RNAs may sharpen spatial expression patterns PLOS Comput. Biol. 3 2007 e233
-
(2007)
PLOS Comput. Biol.
, vol.3
, pp. 233
-
-
Levine, E.1
McHale, P.2
Levine, H.3
-
44
-
-
84856738488
-
Post-transcriptional trafficking and regulation of neuronal gene expression
-
B.J. Goldie, and M.J. Cairns Post-transcriptional trafficking and regulation of neuronal gene expression Mol. Neurobiol. 45 2012 99 108
-
(2012)
Mol. Neurobiol.
, vol.45
, pp. 99-108
-
-
Goldie, B.J.1
Cairns, M.J.2
-
45
-
-
77949435074
-
Hfq affects mRNA levels independently of degradation
-
J. Le Derout, and I.V. Boni E. Hajnsdorf Hfq affects mRNA levels independently of degradation BMC Mol. Biol. 11 2010 17
-
(2010)
BMC Mol. Biol.
, vol.11
, pp. 17
-
-
Le Derout, J.1
Boni, I.V.2
Hajnsdorf, E.3
-
46
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
J. Krol, I. Loedige, and W. Filipowicz The widespread regulation of microRNA biogenesis, function and decay Nat. Rev. Genet. 11 2010 597 610
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
47
-
-
75549087930
-
BioNumbers - The database of key numbers in molecular and cell biology
-
Database Issue
-
R. Milo, and P. Jorgensen M. Springer BioNumbers - the database of key numbers in molecular and cell biology Nucleic Acids Res. 38 Database issue 2010 D750 D753
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Milo, R.1
Jorgensen, P.2
Springer, M.3
-
48
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
R.C. Friedman, and K.K.-H. Farh D.P. Bartel Most mammalian mRNAs are conserved targets of microRNAs Genome Res. 19 2009 92 105
-
(2009)
Genome Res.
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.-H.2
Bartel, D.P.3
-
49
-
-
33846283385
-
The evolution of gene regulation by transcription factors and microRNAs
-
K. Chen, and N. Rajewsky The evolution of gene regulation by transcription factors and microRNAs Nat. Rev. Genet. 8 2007 93 103
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 93-103
-
-
Chen, K.1
Rajewsky, N.2
-
50
-
-
34250805982
-
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
-
A. Grimson, and K.K.-H. Farh D.P. Bartel MicroRNA targeting specificity in mammals: determinants beyond seed pairing Mol. Cell 27 2007 91 105
-
(2007)
Mol. Cell
, vol.27
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.-H.2
Bartel, D.P.3
-
51
-
-
77957850291
-
Emerging roles for natural microRNA sponges
-
M.S. Ebert, and P.A. Sharp Emerging roles for natural microRNA sponges Curr. Biol. 20 2010 R858 R861
-
(2010)
Curr. Biol.
, vol.20
-
-
Ebert, M.S.1
Sharp, P.A.2
-
53
-
-
70350004858
-
An evolutionary perspective of animal microRNAs and their targets
-
N. Shomron, D. Golan, and E. Hornstein An evolutionary perspective of animal microRNAs and their targets J. Biomed. Biotechnol. 2009 2009 594738
-
(2009)
J. Biomed. Biotechnol.
, vol.2009
, pp. 594738
-
-
Shomron, N.1
Golan, D.2
Hornstein, E.3
-
54
-
-
0001973959
-
On diffusion-controlled dissociation
-
O.G. Berg On diffusion-controlled dissociation Chem. Phys. 31 1978 47 57
-
(1978)
Chem. Phys.
, vol.31
, pp. 47-57
-
-
Berg, O.G.1
-
55
-
-
79151474604
-
Theoretical analysis of catalytic-sRNA-mediated gene silencing
-
Y. Hao, L. Xu, and H. Shi Theoretical analysis of catalytic-sRNA-mediated gene silencing J. Mol. Biol. 406 2011 195 204
-
(2011)
J. Mol. Biol.
, vol.406
, pp. 195-204
-
-
Hao, Y.1
Xu, L.2
Shi, H.3
-
57
-
-
79551672951
-
Statistical method for revealing form-function relations in biological networks
-
A. Mugler, and B. Grinshpun C.H. Wiggins Statistical method for revealing form-function relations in biological networks Proc. Natl. Acad. Sci. USA 108 2011 446 451
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 446-451
-
-
Mugler, A.1
Grinshpun, B.2
Wiggins, C.H.3
|