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Volumn 447, Issue , 2008, Pages 3-29

Chapter 1 Analysis of RNA Decay, Processing, and Polyadenylation in Escherichia coli and Other Prokaryotes

Author keywords

[No Author keywords available]

Indexed keywords

AGAROSE; BUFFER; POLYACRYLAMIDE GEL; POLYADENYLIC ACID; REAGENT; RNA; DNA;

EID: 58249086415     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(08)02201-5     Document Type: Review
Times cited : (24)

References (30)
  • 1
    • 0024095739 scopus 로고
    • Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12
    • Arraiano C.M., Yancey S.D., and Kushner S.R. Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12. J. Bacteriol. 170 (1988) 4625-4633
    • (1988) J. Bacteriol. , vol.170 , pp. 4625-4633
    • Arraiano, C.M.1    Yancey, S.D.2    Kushner, S.R.3
  • 2
    • 0027537040 scopus 로고
    • Identification of endonucleolytic cleavage sites involved in the decay of the Escherichia coli trxA mRNA
    • Arraiano C.M., Yancey S.D., and Kushner S.R. Identification of endonucleolytic cleavage sites involved in the decay of the Escherichia coli trxA mRNA. J. Bacteriol. 175 (1993) 1043-1052
    • (1993) J. Bacteriol. , vol.175 , pp. 1043-1052
    • Arraiano, C.M.1    Yancey, S.D.2    Kushner, S.R.3
  • 3
    • 0031547957 scopus 로고    scopus 로고
    • Analysis of the in vivo decay of the Escherichia coli dicistronic pyrF-orfF transcript: Evidence for multiple degradation pathways
    • Arraiano C.M., Cruz A.A., and Kushner S.R. Analysis of the in vivo decay of the Escherichia coli dicistronic pyrF-orfF transcript: Evidence for multiple degradation pathways. J. Mole. Biol. 268 (1997) 261-272
    • (1997) J. Mole. Biol. , vol.268 , pp. 261-272
    • Arraiano, C.M.1    Cruz, A.A.2    Kushner, S.R.3
  • 4
    • 0001244447 scopus 로고
    • Control of poly(A) length
    • Belasco J., and Brawerman G. (Eds), Academic Press, New York
    • Baker E.J. Control of poly(A) length. In: Belasco J., and Brawerman G. (Eds). Control of messenger RNA stability (1993), Academic Press, New York 367-417
    • (1993) Control of messenger RNA stability , pp. 367-417
    • Baker, E.J.1
  • 5
    • 1542267833 scopus 로고    scopus 로고
    • Global analysis of Escherichia coli RNA degradosome function using DNA microarrays
    • Bernstein J.A., Lin P.-H., Cohen S.N., and Lin-Chao S. Global analysis of Escherichia coli RNA degradosome function using DNA microarrays. Proc. Natl. Acad. Sci. USA 101 (2004) 2748-2763
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 2748-2763
    • Bernstein, J.A.1    Lin, P.-H.2    Cohen, S.N.3    Lin-Chao, S.4
  • 6
    • 0030891309 scopus 로고    scopus 로고
    • Northern blotting of RNA denatured in glyoxal without buffer recirculation
    • Burnett W.V. Northern blotting of RNA denatured in glyoxal without buffer recirculation. Bio.Techn. 22 (1997) 668-671
    • (1997) Bio.Techn. , vol.22 , pp. 668-671
    • Burnett, W.V.1
  • 7
    • 0027144168 scopus 로고
    • Isolation of RNA from cells in culture using Catrimox-14™ cationic surfactant
    • Dahle C.E., and Macfarlane D.E. Isolation of RNA from cells in culture using Catrimox-14™ cationic surfactant. Bio.Techn. 15 (1993) 1102-1105
    • (1993) Bio.Techn. , vol.15 , pp. 1102-1105
    • Dahle, C.E.1    Macfarlane, D.E.2
  • 8
    • 0034652188 scopus 로고    scopus 로고
    • Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I
    • Hajnsdorf E., and Régnier P. Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I. Proc. Natl. Acad. Sci. USA 97 (2000) 1501-1505
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1501-1505
    • Hajnsdorf, E.1    Régnier, P.2
  • 9
    • 84867603702 scopus 로고    scopus 로고
    • Messenger RNA decay
    • Böck A., et al. (Ed), American Society for Microbiology Press, Washington, DC (available online at)
    • Kushner S.R. Messenger RNA decay. In: Böck A., et al. (Ed). Escherichia coli and Salmonella: Cellular and molecular biology (2007), American Society for Microbiology Press, Washington, DC. http://www.ecosal.org (available online at)
    • (2007) Escherichia coli and Salmonella: Cellular and molecular biology
    • Kushner, S.R.1
  • 10
    • 0036274640 scopus 로고    scopus 로고
    • RNase G complementation of rne null mutation identified functional interrelationships with RNase E in Escherichia coli
    • Lee K., Bernstein J.S., and Cohen S.N. RNase G complementation of rne null mutation identified functional interrelationships with RNase E in Escherichia coli. Mol. Microbiol. 43 (2002) 1445-1456
    • (2002) Mol. Microbiol. , vol.43 , pp. 1445-1456
    • Lee, K.1    Bernstein, J.S.2    Cohen, S.N.3
  • 11
    • 0242515818 scopus 로고    scopus 로고
    • The effect of a single, temperature-sensitive mutation on global gene expression in Escherichia coli
    • Li Y., Cole K., and Altman S. The effect of a single, temperature-sensitive mutation on global gene expression in Escherichia coli. RNA 9 (2003) 518-532
    • (2003) RNA , vol.9 , pp. 518-532
    • Li, Y.1    Cole, K.2    Altman, S.3
  • 12
    • 0036500552 scopus 로고    scopus 로고
    • RNA quality control: Degradation of defective transfer RNA
    • Li Z., Reimers S., Pandit S., and Deutscher M.P. RNA quality control: Degradation of defective transfer RNA. EMBO J. 21 (2002) 1132-1138
    • (2002) EMBO J. , vol.21 , pp. 1132-1138
    • Li, Z.1    Reimers, S.2    Pandit, S.3    Deutscher, M.P.4
  • 13
    • 0027914505 scopus 로고
    • Isolating RNA from whole blood: The dawn of RNA-based diagnostics
    • Macfarlane D.E., and Dahle C.E. Isolating RNA from whole blood: The dawn of RNA-based diagnostics. Nature 362 (1993) 186-188
    • (1993) Nature , vol.362 , pp. 186-188
    • Macfarlane, D.E.1    Dahle, C.E.2
  • 14
    • 0030902278 scopus 로고    scopus 로고
    • Isolating RNA from clinical samples with Catrimox-12TM and lithium chloride
    • Macfarlane D.E., and Dahle C.E. Isolating RNA from clinical samples with Catrimox-12TM and lithium chloride. J. Clin. Lab. Anal. 11 (1997) 132-139
    • (1997) J. Clin. Lab. Anal. , vol.11 , pp. 132-139
    • Macfarlane, D.E.1    Dahle, C.E.2
  • 15
    • 0033457296 scopus 로고    scopus 로고
    • Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism
    • Mohanty B.K., and Kushner S.R. Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism. Mol. Microbiol. 34 (1999) 1094-1108
    • (1999) Mol. Microbiol. , vol.34 , pp. 1094-1108
    • Mohanty, B.K.1    Kushner, S.R.2
  • 16
    • 0034710943 scopus 로고    scopus 로고
    • Polynucleotide phosphorylase functions both as a 3′ to 5′-exonuclease and a poly(A) polymerase in Escherichia coli
    • Mohanty B.K., and Kushner S.R. Polynucleotide phosphorylase functions both as a 3′ to 5′-exonuclease and a poly(A) polymerase in Escherichia coli. Proc. Natl. Acad. Sci. USA 97 (2000) 11966-11971
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 11966-11971
    • Mohanty, B.K.1    Kushner, S.R.2
  • 17
    • 0142030030 scopus 로고    scopus 로고
    • Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay
    • Mohanty B.K., and Kushner S.R. Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay. Mol. Microbiol. 50 (2003) 645-658
    • (2003) Mol. Microbiol. , vol.50 , pp. 645-658
    • Mohanty, B.K.1    Kushner, S.R.2
  • 18
    • 33750984542 scopus 로고    scopus 로고
    • The majority of E. coli mRNAs undergo post-transcriptional modification in exponentially growing cells
    • Mohanty B.K., and Kushner S.R. The majority of E. coli mRNAs undergo post-transcriptional modification in exponentially growing cells. Nuc. Acids Res. 34 (2006) 5695-5704
    • (2006) Nuc. Acids Res. , vol.34 , pp. 5695-5704
    • Mohanty, B.K.1    Kushner, S.R.2
  • 19
    • 38049073822 scopus 로고    scopus 로고
    • Ribonuclease P processes polycistronic tRNA transcripts in Escherichia coli independent of ribonuclease E
    • Mohanty B.K., and Kushner S.R. Ribonuclease P processes polycistronic tRNA transcripts in Escherichia coli independent of ribonuclease E. Nuc. Acids Res. 35 (2008) 7614-7625
    • (2008) Nuc. Acids Res. , vol.35 , pp. 7614-7625
    • Mohanty, B.K.1    Kushner, S.R.2
  • 20
    • 39149140707 scopus 로고    scopus 로고
    • Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli
    • Mohanty B.K., and Kushner S.R. Rho-independent transcription terminators inhibit RNase P processing of the secG leuU and metT tRNA polycistronic transcripts in Escherichia coli. Nuc. Acids Res. 36 (2007) 364-375
    • (2007) Nuc. Acids Res. , vol.36 , pp. 364-375
    • Mohanty, B.K.1    Kushner, S.R.2
  • 21
    • 7044285063 scopus 로고    scopus 로고
    • The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli
    • Mohanty B.K., Maples V.F., and Kushner S.R. The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. Mol. Microbiol. 54 (2004) 905-920
    • (2004) Mol. Microbiol. , vol.54 , pp. 905-920
    • Mohanty, B.K.1    Maples, V.F.2    Kushner, S.R.3
  • 23
    • 0036571060 scopus 로고    scopus 로고
    • Initiation of tRNA maturation by RNase E is essential for cell viability in Escherichia coli
    • Ow M.C., and Kushner S.R. Initiation of tRNA maturation by RNase E is essential for cell viability in Escherichia coli. Genes Dev. 16 (2002) 1102-1115
    • (2002) Genes Dev. , vol.16 , pp. 1102-1115
    • Ow, M.C.1    Kushner, S.R.2
  • 24
    • 0033636189 scopus 로고    scopus 로고
    • Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly
    • Ow M.C., Liu Q., and Kushner S.R. Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly. Mol. Microbiol. 38 (2000) 854-866
    • (2000) Mol. Microbiol. , vol.38 , pp. 854-866
    • Ow, M.C.1    Liu, Q.2    Kushner, S.R.3
  • 25
    • 0042665928 scopus 로고    scopus 로고
    • RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E
    • Ow M.C., Perwez T., and Kushner S.R. RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E. Mol. Microbiol. 49 (2003) 607-622
    • (2003) Mol. Microbiol. , vol.49 , pp. 607-622
    • Ow, M.C.1    Perwez, T.2    Kushner, S.R.3
  • 26
    • 33645826534 scopus 로고    scopus 로고
    • RNase Z in Escherichia coli plays a significant role in mRNA decay
    • Perwez T., and Kushner S.R. RNase Z in Escherichia coli plays a significant role in mRNA decay. Mol. Microbiol. 60 (2006) 723-737
    • (2006) Mol. Microbiol. , vol.60 , pp. 723-737
    • Perwez, T.1    Kushner, S.R.2
  • 27
    • 0024416021 scopus 로고
    • The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation
    • Sachs A.B., and Davis R.W. The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation. Cell 58 (1989) 857-868
    • (1989) Cell , vol.58 , pp. 857-868
    • Sachs, A.B.1    Davis, R.W.2
  • 29
    • 0025782890 scopus 로고
    • Construction of versatile low-copy-number vectors for cloning, sequencing and expression in Escherichia coli
    • Wang R.F., and Kushner S.R. Construction of versatile low-copy-number vectors for cloning, sequencing and expression in Escherichia coli. Gene 100 (1991) 195-199
    • (1991) Gene , vol.100 , pp. 195-199
    • Wang, R.F.1    Kushner, S.R.2
  • 30
    • 0028865434 scopus 로고
    • Transfer RNA editing in land snail mitochondria
    • Yokobori S.-I., and Pääbo S. Transfer RNA editing in land snail mitochondria. Proc. Natl. Acad. Sci. USA 92 (1995) 10432-10435
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 10432-10435
    • Yokobori, S.-I.1    Pääbo, S.2


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