메뉴 건너뛰기




Volumn 553, Issue 1, 2014, Pages 31-41

Analysis of methylation microarray for tissue specific detection

Author keywords

CpG loci; GPL8490; Methylation microarray; Tissue specific methylation

Indexed keywords

ARTICLE; BIOINFORMATICS; BRAIN TISSUE; CPG ISLAND; DNA METHYLATION; GENE EXPRESSION; GENE FUNCTION; GENETIC TRANSCRIPTION; HUMAN; HUMAN GENOME; HUMAN TISSUE; KIDNEY PARENCHYMA; LIVER; METHYLATION; MUSCLE TISSUE; OVARY; PANCREAS; PRIORITY JOURNAL; STOMACH; TESTIS; TISSUE MICROARRAY; TISSUE SPECIFIC METHYLATION; TRANSCRIPTION INITIATION SITE; BIOLOGY; DNA MICROARRAY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; VALIDATION STUDY;

EID: 84925224138     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2014.09.060     Document Type: Article
Times cited : (16)

References (75)
  • 1
    • 84871594156 scopus 로고    scopus 로고
    • Connection up- and down-regulation expression analysis of microarrays (CU-DREAM): a physiogenomic discovery tool
    • A.M.
    • Aporntewan C., A.M. Connection up- and down-regulation expression analysis of microarrays (CU-DREAM): a physiogenomic discovery tool. Asian Biomed. 2011, 5:257-262.
    • (2011) Asian Biomed. , vol.5 , pp. 257-262
    • Aporntewan, C.1
  • 5
    • 70450169678 scopus 로고    scopus 로고
    • Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns
    • Byun H.M., Siegmund K.D., Pan F., Weisenberger D.J., Kanel G., Laird P.W., Yang A.S. Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns. Hum. Mol. Genet. 2009, 18:4808-4817.
    • (2009) Hum. Mol. Genet. , vol.18 , pp. 4808-4817
    • Byun, H.M.1    Siegmund, K.D.2    Pan, F.3    Weisenberger, D.J.4    Kanel, G.5    Laird, P.W.6    Yang, A.S.7
  • 7
    • 84861912630 scopus 로고    scopus 로고
    • Programming of DNA methylation patterns
    • Cedar H., Bergman Y. Programming of DNA methylation patterns. Annu. Rev. Biochem. 2012, 81:97-117.
    • (2012) Annu. Rev. Biochem. , vol.81 , pp. 97-117
    • Cedar, H.1    Bergman, Y.2
  • 17
    • 78149477660 scopus 로고    scopus 로고
    • Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation
    • Gilchrist D.A., Dos Santos G., Fargo D.C., Xie B., Gao Y., Li L., Adelman K. Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation. Cell 2010, 143:540-551.
    • (2010) Cell , vol.143 , pp. 540-551
    • Gilchrist, D.A.1    Dos Santos, G.2    Fargo, D.C.3    Xie, B.4    Gao, Y.5    Li, L.6    Adelman, K.7
  • 23
    • 79954623906 scopus 로고    scopus 로고
    • Genome-wide DNA methylation profiling of CpG islands in breast cancer identifies novel genes associated with tumorigenicity
    • Hill V.K., Ricketts C., Bieche I., Vacher S., Gentle D., Lewis C., Maher E.R., Latif F. Genome-wide DNA methylation profiling of CpG islands in breast cancer identifies novel genes associated with tumorigenicity. Cancer Res. 2011, 71:2988-2999.
    • (2011) Cancer Res. , vol.71 , pp. 2988-2999
    • Hill, V.K.1    Ricketts, C.2    Bieche, I.3    Vacher, S.4    Gentle, D.5    Lewis, C.6    Maher, E.R.7    Latif, F.8
  • 26
    • 84867400649 scopus 로고    scopus 로고
    • DNA methylation based biomarkers: practical considerations and applications
    • How Kit A., Nielsen H.M., Tost J. DNA methylation based biomarkers: practical considerations and applications. Biochimie 2012, 94:2314-2337.
    • (2012) Biochimie , vol.94 , pp. 2314-2337
    • How Kit, A.1    Nielsen, H.M.2    Tost, J.3
  • 28
    • 77954362183 scopus 로고    scopus 로고
    • Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine
    • Jin S.G., Kadam S., Pfeifer G.P. Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine. Nucleic Acids Res. 2010, 38:e125.
    • (2010) Nucleic Acids Res. , vol.38 , pp. e125
    • Jin, S.G.1    Kadam, S.2    Pfeifer, G.P.3
  • 29
    • 84863986133 scopus 로고    scopus 로고
    • Functions of DNA methylation: islands, start sites, gene bodies and beyond
    • Jones P.A. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat. Rev. Genet. 2012, 13:484-492.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 484-492
    • Jones, P.A.1
  • 30
    • 0035839057 scopus 로고    scopus 로고
    • The role of DNA methylation in mammalian epigenetics
    • Jones P.A., Takai D. The role of DNA methylation in mammalian epigenetics. Science 2001, 293:1068-1070.
    • (2001) Science , vol.293 , pp. 1068-1070
    • Jones, P.A.1    Takai, D.2
  • 33
    • 84856268173 scopus 로고    scopus 로고
    • Long interspersed nuclear element-1 hypomethylation in cancer: biology and clinical applications
    • Kitkumthorn N., Mutirangura A. Long interspersed nuclear element-1 hypomethylation in cancer: biology and clinical applications. Clin. Epigenetics 2011, 2:315-330.
    • (2011) Clin. Epigenetics , vol.2 , pp. 315-330
    • Kitkumthorn, N.1    Mutirangura, A.2
  • 42
    • 79955795581 scopus 로고    scopus 로고
    • Paused RNA polymerase II as a developmental checkpoint
    • Levine M. Paused RNA polymerase II as a developmental checkpoint. Cell 2011, 145:502-511.
    • (2011) Cell , vol.145 , pp. 502-511
    • Levine, M.1
  • 43
    • 2942607684 scopus 로고    scopus 로고
    • Quantification of plasma Epstein-Barr virus DNA in patients with advanced nasopharyngeal carcinoma
    • Lin J.C., Wang W.Y., Chen K.Y., Wei Y.H., Liang W.M., Jan J.S., Jiang R.S. Quantification of plasma Epstein-Barr virus DNA in patients with advanced nasopharyngeal carcinoma. N. Engl. J. Med. 2004, 350:2461-2470.
    • (2004) N. Engl. J. Med. , vol.350 , pp. 2461-2470
    • Lin, J.C.1    Wang, W.Y.2    Chen, K.Y.3    Wei, Y.H.4    Liang, W.M.5    Jan, J.S.6    Jiang, R.S.7
  • 48
    • 40749153583 scopus 로고    scopus 로고
    • Epigenetics: the DNA methylation profile of tissue-dependent and differentially methylated regions in cells
    • Ohgane J., Yagi S., Shiota K. Epigenetics: the DNA methylation profile of tissue-dependent and differentially methylated regions in cells. Placenta 2008, 29(Suppl. A):S29-S35.
    • (2008) Placenta , vol.29 , pp. S29-S35
    • Ohgane, J.1    Yagi, S.2    Shiota, K.3
  • 49
    • 79952265169 scopus 로고    scopus 로고
    • A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues
    • Pai A.A., Bell J.T., Marioni J.C., Pritchard J.K., Gilad Y. A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues. PLoS Genet. 2011, 7:e1001316.
    • (2011) PLoS Genet. , vol.7 , pp. e1001316
    • Pai, A.A.1    Bell, J.T.2    Marioni, J.C.3    Pritchard, J.K.4    Gilad, Y.5
  • 50
    • 77952571879 scopus 로고    scopus 로고
    • Different DNA methylation patterns detected by the Amplified Methylation Polymorphism Polymerase Chain Reaction (AMP PCR) technique among various cell types of bulls
    • Phutikanit N., Suwimonteerabutr J., Harrison D., D'Occhio M., Carroll B., Techakumphu M. Different DNA methylation patterns detected by the Amplified Methylation Polymorphism Polymerase Chain Reaction (AMP PCR) technique among various cell types of bulls. Acta Vet. Scand. 2010, 52:18.
    • (2010) Acta Vet. Scand. , vol.52 , pp. 18
    • Phutikanit, N.1    Suwimonteerabutr, J.2    Harrison, D.3    D'Occhio, M.4    Carroll, B.5    Techakumphu, M.6
  • 51
    • 84912085999 scopus 로고    scopus 로고
    • Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters
    • Quinodoz M., Gobet C., Naef F., Gustafson K.B. Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters. Genome Biol. 2014, 15:R85.
    • (2014) Genome Biol. , vol.15 , pp. R85
    • Quinodoz, M.1    Gobet, C.2    Naef, F.3    Gustafson, K.B.4
  • 59
    • 84877935652 scopus 로고    scopus 로고
    • Transcriptional elongation checkpoint control in development and disease
    • Smith E., Shilatifard A. Transcriptional elongation checkpoint control in development and disease. Genes Dev. 2013, 27:1079-1088.
    • (2013) Genes Dev. , vol.27 , pp. 1079-1088
    • Smith, E.1    Shilatifard, A.2
  • 69
    • 84892920228 scopus 로고    scopus 로고
    • Characterizing DNA methylation alterations from The Cancer Genome Atlas
    • Weisenberger D.J. Characterizing DNA methylation alterations from The Cancer Genome Atlas. J. Clin. Invest. 2014, 124:17-23.
    • (2014) J. Clin. Invest. , vol.124 , pp. 17-23
    • Weisenberger, D.J.1
  • 73
    • 56649093037 scopus 로고    scopus 로고
    • GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus
    • Zhu Y., Davis S., Stephens R., Meltzer P.S., Chen Y. GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus. Bioinformatics 2008, 24:2798-2800.
    • (2008) Bioinformatics , vol.24 , pp. 2798-2800
    • Zhu, Y.1    Davis, S.2    Stephens, R.3    Meltzer, P.S.4    Chen, Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.